BAC Information

Click to search

BAC

Clone NameB6Ng01-089P17
Chromosome11 (Build37)
Map Location 115,608,609 - 115,798,055
singlet/doubletdoublet
Overlap gene2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp
Upstream geneDnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184
Downstream geneItgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089P17.bB6Ng01-089P17.g
ACCDH902410DH902411
length1,200318
definitionDH902410|Mus musculus domesticus DNA, BAC clone: B6Ng01-089P17, 5' end.DH902411|Mus musculus domesticus DNA, BAC clone: B6Ng01-089P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,796,826 - 115,798,055)(115,608,609 - 115,608,926)
sequence
gaattctcaaaagagaatacaaaatacattctgtgaaatgttttatttgc
tgttgtttttatgtggtactggggaatcaaacccagggtcctgcgaatgc
taggcaagtgctatcgatgtaccactgagctacatccccagtccttattt
ttactcatttgagacaggaatatactcttgaatcttcaatcttcttgctt
tagcacctgaatgctatacatctgcaggacctggaccattaaacctagtt
taaagaacattctcgtgctagcctttacatatcaacacataaccaaaaac
cccaaacaacaacctgaagaacaaaataaagctcgctgtgagtgtttcag
tgaatgctgcttttactatgccagattcaagatccaaattcagttttaga
tgcctttttgtgctaaacaacagcctggatttccttgcctctttcccttc
cagactttaaagtcccaagtaatactgctcaggtcgctgtccgccatgaa
ctgctcctcctcttaacaaggacacagtcctcctgtctgttacccgcacc
tacttaactccaaggaagttctggaagaaccaggggacgctgacaaaaac
accaagtggaacataaccaaagaatcaaagtgtggatgacagcagcaaac
ttcccttccttaccttgttacaaagtgaagcacttgaataaaccccaacc
gagattaatacaaagttgattacagatatgtaagtgacacactagttagg
gcaaacacatttataaagtgggaagattagctaaactcacaaagcaacat
aaaatacccactgacactaaggttatgaaaagtaaccaagctaggcctag
tgcaacatggttataaccccagctctcaataagctgacctagaggatctg
gagctcaggggtaaaggtttgccatcagtttgggcttcataagaccccat
ctcaaaaatgcaaaacaaaagacctccttccaaagctcaattcaaagcta
tacatgtggtccagtgaaaaaaaaaaaaaaaaacgacttaactttcaaaa
gagctaataccacccacaattcacttttttctctttctgtgtgctgggga
tcagttcttgacatgcttagcaagccctctcccatgagcttctcctcaac
gtacactgatcaaccaatgtaaagtcgaggtgaccatgggaatggaagag

aaagcaattcagcatgaggatctttaacataaacgaagatttgtttttat
ttatgattgtgtgtctgtgtgtgtcccagtgcccttgaagagggtgttgg
gtccccgggggttgaagttataggtggttgggagccaccggatgtggatg
ccagaagccccgttcaggacccctgaaattgcaaacaaggagccattccc
gcggtctctcagcacaaagatcttaaaccaacccccttctgcctgtcacg
tttaagcaaatgactaggtggaaaagatggcgcagtgacgaaggatgctc
ctccgggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115796826_115798055
seq2: B6Ng01-089P17.b_49_1248 (reverse)

seq1  CTCTTCCATT-CCATGGTCAACTCTGTCCCTTTTCCCTTTTGGTTTGGAA  49
      |||||||||| ||||||||| |||     |||| |    ||||||    |
seq2  CTCTTCCATTCCCATGGTCACCTC---GACTTTAC---ATTGGTT---GA  41

seq1  TCAGTTGGTACCCGTTGAGGATGTAGCTCATGGGAGAGGGCTTTGCCTAA  99
      |||||  |||  ||||||||| | |||||||||||||||||||   ||||
seq2  TCAGT--GTA--CGTTGAGGA-GAAGCTCATGGGAGAGGGCTT--GCTAA  84

seq1  GCATGTCAAGGACTTGATCCCCAGCACCACAGAAAGAAGAAAAAAGTTGA  149
      |||||||||| || |||||||||||| ||||||||| ||||||||| |||
seq2  GCATGTCAAGAAC-TGATCCCCAGCA-CACAGAAAG-AGAAAAAAG-TGA  130

seq1  ATTGGTTGGGTGGTATTAGCTCTTTTTGAAAGTTAAGTCGTTTTTTTTTT  199
      ||||  |||||||||||||||| |||||||||||||||||  ||||||||
seq2  ATTG--TGGGTGGTATTAGCTC-TTTTGAAAGTTAAGTCG--TTTTTTTT  175

seq1  TTTTTTTTTCACCTGGACCACATTGTATTAGCTTTTGAATTGAGCTTTTG  249
      ||||||||||| |||||||||| |||| |||| |||||||||||| ||||
seq2  TTTTTTTTTCA-CTGGACCACA-TGTA-TAGC-TTTGAATTGAGC-TTTG  220

seq1  GAAGGAGGTCTTTTGTTTTGCATTTTTGAGATGGGGTCTTATGAAGCCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGTCTTTTGTTTTGCATTTTTGAGATGGGGTCTTATGAAGCCCA  270

seq1  AACTGATGGCAAACCTTTTACCCCTGAGCTCCAGATCCTCTAGGTCAGCT  349
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACTGATGGCAAACC-TTTACCCCTGAGCTCCAGATCCTCTAGGTCAGCT  319

seq1  TATTGAGAGCTGGGGTTATAACCATGTTGCACTAGGCCTAGCTTGGTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGAGCTGGGGTTATAACCATGTTGCACTAGGCCTAGCTTGGTTAC  369

seq1  TTTTCATAACCTTAGTGTCAGTGGGTATTTTATGTTGCTTTGTGAGTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAACCTTAGTGTCAGTGGGTATTTTATGTTGCTTTGTGAGTTTA  419

seq1  GCTAATCTTCCCACTTTATAAATGTGTTTGCCCTAACTAGTGTGTCACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCTTCCCACTTTATAAATGTGTTTGCCCTAACTAGTGTGTCACTT  469

seq1  ACATATCTGTAATCAACTTTGTATTAATCTCGGTTGGGGTTTATTCAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTGTAATCAACTTTGTATTAATCTCGGTTGGGGTTTATTCAAGT  519

seq1  GCTTCACTTTGTAACAAGGTAAGGAAGGGAAGTTTGCTGCTGTCATCCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACTTTGTAACAAGGTAAGGAAGGGAAGTTTGCTGCTGTCATCCAC  569

seq1  ACTTTGATTCTTTGGTTATGTTCCACTTGGTGTTTTTGTCAGCGTCCCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGATTCTTTGGTTATGTTCCACTTGGTGTTTTTGTCAGCGTCCCCT  619

seq1  GGTTCTTCCAGAACTTCCTTGGAGTTAAGTAGGTGCGGGTAACAGACAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTCCAGAACTTCCTTGGAGTTAAGTAGGTGCGGGTAACAGACAGG  669

seq1  AGGACTGTGTCCTTGTTAAGAGGAGGAGCAGTTCATGGCGGACAGCGACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTGTCCTTGTTAAGAGGAGGAGCAGTTCATGGCGGACAGCGACC  719

seq1  TGAGCAGTATTACTTGGGACTTTAAAGTCTGGAAGGGAAAGAGGCAAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTATTACTTGGGACTTTAAAGTCTGGAAGGGAAAGAGGCAAGGA  769

seq1  AATCCAGGCTGTTGTTTAGCACAAAAAGGCATCTAAAACTGAATTTGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGGCTGTTGTTTAGCACAAAAAGGCATCTAAAACTGAATTTGGAT  819

seq1  CTTGAATCTGGCATAGTAAAAGCAGCATTCACTGAAACACTCACAGCGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCTGGCATAGTAAAAGCAGCATTCACTGAAACACTCACAGCGAG  869

seq1  CTTTATTTTGTTCTTCAGGTTGTTGTTTGGGGTTTTTGGTTATGTGTTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTGTTCTTCAGGTTGTTGTTTGGGGTTTTTGGTTATGTGTTGA  919

seq1  TATGTAAAGGCTAGCACGAGAATGTTCTTTAAACTAGGTTTAATGGTCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAAGGCTAGCACGAGAATGTTCTTTAAACTAGGTTTAATGGTCCA  969

seq1  GGTCCTGCAGATGTATAGCATTCAGGTGCTAAAGCAAGAAGATTGAAGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGCAGATGTATAGCATTCAGGTGCTAAAGCAAGAAGATTGAAGAT  1019

seq1  TCAAGAGTATATTCCTGTCTCAAATGAGTAAAAATAAGGACTGGGGATGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGTATATTCCTGTCTCAAATGAGTAAAAATAAGGACTGGGGATGT  1069

seq1  AGCTCAGTGGTACATCGATAGCACTTGCCTAGCATTCGCAGGACCCTGGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTGGTACATCGATAGCACTTGCCTAGCATTCGCAGGACCCTGGG  1119

seq1  TTTGATTCCCCAGTACCACATAAAAACAACAGCAAATAAAACATTTCACA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCCCCAGTACCACATAAAAACAACAGCAAATAAAACATTTCACA  1169

seq1  GAATGTATTTTGTATTCTCTTTTGAGAATTC  1230
      |||||||||||||||||||||||||||||||
seq2  GAATGTATTTTGTATTCTCTTTTGAGAATTC  1200

seq1: chr11_115608609_115608926
seq2: B6Ng01-089P17.g_76_393

seq1  AAAGCATTTCAGCATGAGGATCTTTAACATAAACGAAGATTTGTTTTTAT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATTCAGCATGAGGATCTTTAACATAAACGAAGATTTGTTTTTAT  50

seq1  TTATGATTGTGTGTCTGTGTGTGTCCCAGTGCCCTTGAAGAGGGTGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTGTGTGTCTGTGTGTGTCCCAGTGCCCTTGAAGAGGGTGTTGG  100

seq1  GTCCCCGGGGGTTGAAGTTATAGGTGGTTGGGAGCCACCGGATGTGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCGGGGGTTGAAGTTATAGGTGGTTGGGAGCCACCGGATGTGGATG  150

seq1  CCAGAAGCCCCGTTCAGGACCCCTGAAATTGCAAACAAGGAGCCATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCCCCGTTCAGGACCCCTGAAATTGCAAACAAGGAGCCATTCCC  200

seq1  GCGGTCTCTCAGCACAAAGATCTTAAACCAACCCCCTTCTGCCTGTCACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCTCTCAGCACAAAGATCTTAAACCAACCCCCTTCTGCCTGTCACG  250

seq1  TTTAAGCAAATGACTAGGTGGAAAAGATGGCGCAGTGACGAAGGATGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCAAATGACTAGGTGGAAAAGATGGCGCAGTGACGAAGGATGCTC  300

seq1  CTCCGGGGGGGGGGGGGG  318
      ||||||||||||||||||
seq2  CTCCGGGGGGGGGGGGGG  318