BAC Information

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BAC

Clone NameB6Ng01-090F13
Chromosome11 (Build37)
Map Location 66,413,034 - 66,414,189
singlet/doubletsinglet
Overlap genenone
Upstream geneMap2k4, Zkscan6, Dnahc9, Gm879, LOC668323
Downstream geneA530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090F13.bB6Ng01-090F13.g
ACCDH902674DH902675
length1,2521,138
definitionDH902674|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F13, 5' end.DH902675|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaataccactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaattcccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgacccacacacctatggtcacttgatcttcgacagggagct
aaaaccatccagtggaagaaaagacagcattttcaacattggtgctggca
ccaactggttgttttaatgtagaagaatgcgaatcgatccatacttatct
ccttgtacctaagtcaattctaatggatcaagaactttcacgtaaaccag
gaaaactgaacttatagaggagaaagtgggggaaagcctgaagaattggc
aagggaaaatctgaacggacagcatgctgtgctgtagatcgagaattgac
aatggaactaatgacttcagttctgcagggcaagaaccgtcatagacaag
aacccaacttggagaccttacctatctaaatcgaatagggcacgtaaact
ac
gaattccattggtcttagacatacgtaagttgagagcaatgatcaaaact
agggatgctgtgctctgcggtaccagcggagaagcaccgtgaagagaaga
gagtggtagactgtgctatagtatttcccagcatctactcttggggaaag
gtctgaattcaagaaacctgaggccatagagaagagaagtctgcatgagt
cttacagacaggcaagcatcatgcctgtgctactgtgctggttaattcct
ttgtcaacttgacatacctagagtgttgctggaagaagaaacctgaattg
aggaaagcacctccattaaatgattttctaaccaatgagtaatgtgggag
ggctcagtccactgtgggcagcgccaccccagacaggtggtcctaaatta
tattaaaaagcaaggtgagtaagtcatgtcgagaaaaccagtaagtagtg
ctcctccattgcttcagttccagccttgtcctttcctcagtgatggagtg
gaagctgagagttgagaaatgaactcaaacctttcctccccaagttggtt
ttatcaatgttttatcacagcaacagagaagcaaaagcagtctaaaacag
gtacttgagtgtgtcttagcataaattgcttgaaaccagcttgtcttggt
ccatgttctgctgctaatatcacaatactctcaacctaataagccacaaa
gcaaagaggttcaactggactcctggttctggccaaggtcaaaggctgcc
tttggtgatgaccctgctggtagagagatgagaggcagggagtctgcatg
tgtatccgatggtctctctccctcttcggataaagtcaccagatgcaact
gtgggagtcacagcttgataactgtatgaaccactgttggatggaagatc
tccacccaactaatgcttcacagtgggggatcaaactccaacatcaatca
tggagaaacaaaccagattcaaaccatagtgagattcagagatagatgac
tttcttgaaaggcaacatgacagaaggcagctgttgacactgtggggaac
aagactgacgtacaaaagagtatgtgggatctgttaggtgctttgagctc
aataaagaaactataggatgtgaaacctgctcatgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_66413034_66414189
seq2: B6Ng01-090F13.g_69_1206 (reverse)

seq1  GAGCAT-----GTTTTCACATCCCTAATTAT-GTTTCTTTTTATTTGAGC  44
      ||||||     | ||||||||||     ||| ||||||||    ||||||
seq2  GAGCATGAGCAGGTTTCACATCC-----TATAGTTTCTTT---ATTGAGC  42

seq1  TTCAAAACCACCTTAACAGTATCCCACATTACTTCTGTTTGTACGTTCAG  94
      |   ||| |||| |||||| |||||||| ||| ||| |||||||| ||||
seq2  T--CAAAGCACC-TAACAG-ATCCCACA-TAC-TCT-TTTGTACG-TCAG  84

seq1  TCCTTTTGTTCCCCACAAGGTGGTCCACAGCCTGCCTTCTGTCATGTTGC  144
      ||   ||||||||||||  || ||| |||| |||||||||||||||||||
seq2  TC---TTGTTCCCCACA--GT-GTCAACAG-CTGCCTTCTGTCATGTTGC  127

seq1  CTTTCAAGAAGGTCATTCTATCTCCTGAATCTCACTATGGTTTGAATCTG  194
      |||||||||| |||| ||||||| ||||||||||||||||||||||||||
seq2  CTTTCAAGAAAGTCA-TCTATCT-CTGAATCTCACTATGGTTTGAATCTG  175

seq1  GTTTGTTTTCTCCATGATTGATGTTGGAGTTTGAT-CCCCACTGTGAAGC  243
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTTG-TTTCTCCATGATTGATGTTGGAGTTTGATCCCCCACTGTGAAGC  224

seq1  ATTAGTTGGGT-GAGATCTTCCATCCAACAGTGGTTCATACAGTTATCAA  292
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTGGGTGGAGATCTTCCATCCAACAGTGGTTCATACAGTTATCAA  274

seq1  GCTGTGACTCCCACAGTTGCATCTGGTGACTTTATCCGAAGAGGGAGAGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACTCCCACAGTTGCATCTGGTGACTTTATCCGAAGAGGGAGAGA  324

seq1  GACCATCGGATACACATGCAGACTCCCTGCCTCTCATCTCTCTACCAGCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCGGATACACATGCAGACTCCCTGCCTCTCATCTCTCTACCAGCA  374

seq1  GGGTCATCACCAAAGGCAGCCTTTGACCTTGGCCAGAACCAGGAGTCCAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATCACCAAAGGCAGCCTTTGACCTTGGCCAGAACCAGGAGTCCAG  424

seq1  TTGAACCTCTTTGCTTTGTGGCTTATTAGGTTGAGAGTATTGTGATATTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTCTTTGCTTTGTGGCTTATTAGGTTGAGAGTATTGTGATATTA  474

seq1  GCAGCAGAACATGGACCAAGACAAGCTGGTTTCAAGCAATTTATGCTAAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAACATGGACCAAGACAAGCTGGTTTCAAGCAATTTATGCTAAG  524

seq1  ACACACTCAAGTACCTGTTTTAGACTGCTTTTGCTTCTCTGTTGCTGTGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCAAGTACCTGTTTTAGACTGCTTTTGCTTCTCTGTTGCTGTGA  574

seq1  TAAAACATTGATAAAACCAACTTGGGGAGGAAAGGTTTGAGTTCATTTCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTGATAAAACCAACTTGGGGAGGAAAGGTTTGAGTTCATTTCT  624

seq1  CAACTCTCAGCTTCCACTCCATCACTGAGGAAAGGACAAGGCTGGAACTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCAGCTTCCACTCCATCACTGAGGAAAGGACAAGGCTGGAACTG  674

seq1  AAGCAATGGAGGAGCACTACTTACTGGTTTTCTCGACATGACTTACTCAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGGAGGAGCACTACTTACTGGTTTTCTCGACATGACTTACTCAC  724

seq1  CTTGCTTTTTAATATAATTTAGGACCACCTGTCTGGGGTGGCGCTGCCCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTTTAATATAATTTAGGACCACCTGTCTGGGGTGGCGCTGCCCA  774

seq1  CAGTGGACTGAGCCCTCCCACATTACTCATTGGTTAGAAAATCATTTAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGACTGAGCCCTCCCACATTACTCATTGGTTAGAAAATCATTTAAT  824

seq1  GGAGGTGCTTTCCTCAATTCAGGTTTCTTCTTCCAGCAACACTCTAGGTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGCTTTCCTCAATTCAGGTTTCTTCTTCCAGCAACACTCTAGGTA  874

seq1  TGTCAAGTTGACAAAGGAATTAACCAGCACAGTAGCACAGGCATGATGCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGTTGACAAAGGAATTAACCAGCACAGTAGCACAGGCATGATGCT  924

seq1  TGCCTGTCTGTAAGACTCATGCAGACTTCTCTTCTCTATGGCCTCAGGTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCTGTAAGACTCATGCAGACTTCTCTTCTCTATGGCCTCAGGTT  974

seq1  TCTTGAATTCAGACCTTTCCCCAAGAGTAGATGCTGGGAAATACTATAGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTCAGACCTTTCCCCAAGAGTAGATGCTGGGAAATACTATAGC  1024

seq1  ACAGTCTACCACTCTCTTCTCTTCACGGTGCTTCTCCGCTGGTACCGCAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTACCACTCTCTTCTCTTCACGGTGCTTCTCCGCTGGTACCGCAG  1074

seq1  AGCACAGCATCCCTAGTTTTGATCATTGCTCTCAACTTACGTATGTCTAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCATCCCTAGTTTTGATCATTGCTCTCAACTTACGTATGTCTAA  1124

seq1  GACCAATGGAATTC  1156
      ||||||||||||||
seq2  GACCAATGGAATTC  1138