BAC Information

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BAC

Clone NameB6Ng01-090K02
Chromosome11 (Build37)
Map Location 49,739,199 - 49,863,786
singlet/doubletdoublet
Overlap geneRasgef1c, Rnf130
Upstream geneOTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9
Downstream geneLOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090K02.bB6Ng01-090K02.g
ACCDH902877DH902878
length1,2101,193
definitionDH902877|Mus musculus domesticus DNA, BAC clone: B6Ng01-090K02, 5' end.DH902878|Mus musculus domesticus DNA, BAC clone: B6Ng01-090K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,739,199 - 49,740,413)(49,862,542 - 49,863,786)
sequence
gaattctttgtgttttttgaggtgaagccacagcactccaggctctcatt
actgtcacaggatgccccatttctctgaagggtctctagttcggcctcat
cctgaggattcatgtgagctatgaccctatttccaaagaagaccctgttt
tgaggtagtgggggctgggtctctggcttatcttctgtgtaggagacaca
attcagccttcacagtgttgttatcaccacctgccctagtccaggcagct
gttaaccccacactacattgtgattatttacttcaaatggtgaattatag
cttagaggacacaggtggggtgtctcatctagcacacttgagacccagac
gtatttccaatttccaattgttttcagattttgaaacatttacacttcca
tagtgggatatcttgtggataggatctaaggccaacacaaggctcactga
tatctcatatagaacttgaacacgcattctggaggtgatgctagccaata
ttaccggatattataatgtgtgcgcattccagagtggagcatctccacct
gaggcttcatgttgacacgcaaagaattcagattttgaaccagttcggat
ttctggattagggatctttgacatatttattttagttctgattccttgtg
agtcccagatgggcgtggccagcagatgggcgtggcccagcagctgcttc
ctgttgcctatcttgcttgtctatggtgttagccatgtagcactcacctc
catcttcctcctgtgttcagaaaatgcccctgcctgggcacaacgggttt
aaaatctgaaagttggtgtgtacaacaatggtttccaatgtagcagcttt
tactcatgtctcctcttgcttggaactcagaccttagtataaagggacat
cagcataagggtttgcagacagctggaaacttctgttttctagttgtgtg
agagctgccagctgcttatggtcatgtcatcaggagaatttacctagctg
actcatcatgtgtgcatcccagcctgtagattacatttcagtaaaacatc
atacaaacactgagtctgacattggagccagaggtactataggtgcattg
tttgtctgcataactcacaggcagtagtccagagtcagcttgggataaga
acttaagttccttaatttgtagaaaaacctggaactgaggaactgtgaaa
tctccacatc
gaattcactcaaatgcaaatggttccaaaagcatttacatcagtaagaat
gcaatgtataactacaagaatgagacatgtgggctcctgtttcaggaagc
agtatttattattcaggagaagaaaatgaggtttcacaaccacttaatac
tgtagtgtatgtatcctacctcattattccttctaattataaaaataaat
gaacaatgaaatggtattgatagctctgaacagctgcccattgtgattaa
gtggttctactgcagatttaatgccatttgtttgtatttaaacaatttat
tttgtgaaaacatattgaagcatggattatctatgtaattatgaactatt
aaaatatgtcattagcaattttgttcaaattcagaaccactttactttca
cgttcttcaaatttcttaagagagaactgcctaatttctttgcattcatt
agttgcagaactgagcaaacaaatcataatgaaaatctgaaattacagac
attacaaaatattacactatataagaacttaaggcctggggatagcacag
cagtaaagtgtttgcctagcatgtgttgaaggcctgctataaagcctcag
cactataaaaaatagtaagaaaaacccaaagtcttaaattttgttccctg
tatacattttcctgttgaatgcagaaacaataacgaggctttcatttcct
tcttgataagcaccaaacaaatatgggatcctcaccttgatgaacttttt
atgaatgtgtgtgcatgtccatgtgcatgtgcgaagtgtgtgcgtgtgca
tatggaggccagaggacaccctcatgtgtgaacactcaggaacagttttc
atcttctttgagacgggctcacgattaggctagactggctggtcagtaaa
gtcccaaggatctgcctgacttcacctccagttccgggattacaaataca
tcctatatgcctggcattttaaagtggattctggggatccactcaggtct
ctgcttgcaggcagtactttacatagcacttccagcttcacagtacattt
tatactacggactcagagcaacatatcaggaaaaggataccactattcta
attaagtcttgcaggaaatgctcaggttagaacacttgacgttgtgcaga
ctagtcaatcttagacacgaattggcctcaggccttggaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_49739199_49740413
seq2: B6Ng01-090K02.b_44_1253

seq1  GAATTCTTTGTGTTTTTTGAGGTGAAGCCACAGCACTCCAGGCTCTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGTTTTTTGAGGTGAAGCCACAGCACTCCAGGCTCTCATT  50

seq1  ACTGTCACAGGATGCCCCATTTCTCTGAAGGGTCTCTAGTTCGGCCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCACAGGATGCCCCATTTCTCTGAAGGGTCTCTAGTTCGGCCTCAT  100

seq1  CCTGAGGATTCATGTGAGCTATGACCCTATTTCCAAAGAAGACCCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGATTCATGTGAGCTATGACCCTATTTCCAAAGAAGACCCTGTTT  150

seq1  TGAGGTAGTGGGGGCTGGGTCTCTGGCTTATCTTCTGTGTAGGAGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAGTGGGGGCTGGGTCTCTGGCTTATCTTCTGTGTAGGAGACACA  200

seq1  ATTCAGCCTTCACAGTGTTGTTATCACCACCTGCCCTAGTCCAGGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCCTTCACAGTGTTGTTATCACCACCTGCCCTAGTCCAGGCAGCT  250

seq1  GTTAACCCCACACTACATTGTGATTATTTACTTCAAATGGTGAATTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCCCACACTACATTGTGATTATTTACTTCAAATGGTGAATTATAG  300

seq1  CTTAGAGGACACAGGTGGGGTGTCTCATCTAGCACACTTGAGACCCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGACACAGGTGGGGTGTCTCATCTAGCACACTTGAGACCCAGAC  350

seq1  GTATTTCCAATTTCCAATTGTTTTCAGATTTTGAAACATTTACACTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCAATTTCCAATTGTTTTCAGATTTTGAAACATTTACACTTCCA  400

seq1  TAGTGGGATATCTTGTGGATAGGATCTAAGGCCAACACAAGGCTCACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGATATCTTGTGGATAGGATCTAAGGCCAACACAAGGCTCACTGA  450

seq1  TATCTCATATAGAACTTGAACACGCATTCTGGAGGTGATGCTAGCCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATATAGAACTTGAACACGCATTCTGGAGGTGATGCTAGCCAATA  500

seq1  TTACCGGATATTATAATGTGTGCGCATTCCAGAGTGGAGCATCTCCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGGATATTATAATGTGTGCGCATTCCAGAGTGGAGCATCTCCACCT  550

seq1  GAGGCTTCATGTTGACACGCAAAGAATTCAGATTTTGAACCAGTTCGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTCATGTTGACACGCAAAGAATTCAGATTTTGAACCAGTTCGGAT  600

seq1  TTCTGGATTAGGGATCTTTGACATATTTATTTTAGTTCTGATTCCTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATTAGGGATCTTTGACATATTTATTTTAGTTCTGATTCCTTGTG  650

seq1  AGTCCCAGATGGGCGTGGCCAGCAGATGGGCGTGGCCCAGCAGCTGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGATGGGCGTGGCCAGCAGATGGGCGTGGCCCAGCAGCTGCTTC  700

seq1  CTGTTGCCTATCTTGCTTGTCTATGGTGTTAGCCATGTAGCACTCACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCCTATCTTGCTTGTCTATGGTGTTAGCCATGTAGCACTCACCTC  750

seq1  CATCTTCCTCCTGTGTTCAGAAAATGCCCCTGCCTGGGCACAACGGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCTCCTGTGTTCAGAAAATGCCCCTGCCTGGGCACAACGGGTTT  800

seq1  AAAATCTGAAAGTTGGTGTGTACAACAATGGTTTCCAATGTAGCAGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGAAAGTTGGTGTGTACAACAATGGTTTCCAATGTAGCAGCTTT  850

seq1  TACTCATGTCTCCTCTTGCTTGGAACTCAGACCTTAGTATAAAGGGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGTCTCCTCTTGCTTGGAACTCAGACCTTAGTATAAAGGGACAT  900

seq1  CAGCATAAGGGTTTGCAGACAGCTGGAAACTTCTGTTTTCTAG-TGTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGCATAAGGGTTTGCAGACAGCTGGAAACTTCTGTTTTCTAGTTGTGTG  950

seq1  AGAGCTGCCAGCTGCTTATGGTCATGTCATCAGGAGAATTTACCTAGCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCCAGCTGCTTATGGTCATGTCATCAGGAGAATTTACCTAGCTG  1000

seq1  ACTCATTCATGTGTGCATCCCAGGCTGTAGATTACATTTCAGTAAAAACA  1049
      ||||| ||||||||||||||||| ||||||||||||||||||| ||||||
seq2  ACTCA-TCATGTGTGCATCCCAGCCTGTAGATTACATTTCAGT-AAAACA  1048

seq1  TCATACAAACAACTGAGTCTGACATTGGAGCCAGAGGTACTATAGGTGCA  1099
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCATACAAAC-ACTGAGTCTGACATTGGAGCCAGAGGTACTATAGGTGCA  1097

seq1  TTGGTTTGTCGTGCATAACCCACAGGCAGTAGCCCAGAGGTCAGTCTGGG  1149
      || ||||||| |||||||| |||||||||||| ||||| |||||  ||||
seq2  TT-GTTTGTC-TGCATAACTCACAGGCAGTAGTCCAGA-GTCAGCTTGGG  1144

seq1  ATAGAGACTT-AGTTCCTTAAATTTGTAGGAAGAGACCCAGGACTGAGG-  1197
      |||   |||| |||||||| |||||||||  | | |||  | ||||||| 
seq2  ATAAGAACTTAAGTTCCTT-AATTTGTAG--AAAAACCTGGAACTGAGGA  1191

seq1  ACTGTAGCATCTCC-CATC  1215
      |||||   |||||| ||||
seq2  ACTGTGAAATCTCCACATC  1210

seq1: chr11_49862542_49863786
seq2: B6Ng01-090K02.g_68_1260 (reverse)

seq1  GAGTTCCAAGGCTGTGA-GCCAATATCTGTGTGCTAGGAATTGAACCTTA  49
      ||||||||||||  ||| |||||| || |||| ||| | |||||    ||
seq2  GAGTTCCAAGGC-CTGAGGCCAAT-TC-GTGT-CTAAG-ATTGA---CTA  42

seq1  GTCCTGCACAACAGTCAAGTGCTCTTAACCACTGAGCCATTTCTCCTGCC  99
      || ||||||||| |||||||| || ||||  ||||| ||||  |||||| 
seq2  GT-CTGCACAAC-GTCAAGTGTTC-TAAC--CTGAG-CATT--TCCTGC-  83

seq1  AAGGACTATAAATTTTAAGAATAGTGGTTATCACATTTTTTTTCTTTGAT  149
       | |||| |||    | |||||||||||      ||  |||| |  ||||
seq2  -AAGACT-TAA----TTAGAATAGTGGT------ATCCTTTTCC--TGAT  119

seq1  ATTTGTTTTGCTTCTGAGTCCGTAAGTTATAAAATGTACTTGTGAAGCTG  199
      |    | |||| ||||||||||||   |||||||||||| ||||||||| 
seq2  A----TGTTGC-TCTGAGTCCGTA--GTATAAAATGTAC-TGTGAAGCT-  160

seq1  GGAAGGTGGCTTAATTGGTAAAGTACTTGCCTTGCAAGCAAGAGGACCTG  249
      |||||   |||  ||  ||||||||| |||| ||||||| ||| ||||||
seq2  GGAAG--TGCT--AT--GTAAAGTAC-TGCC-TGCAAGC-AGA-GACCTG  200

seq1  AGTTGGATCCCCAGAATCCACTTTAAAAATGCCAGGCATAATAGGATGTA  299
      || ||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  AG-TGGATCCCCAGAATCCACTTT-AAAATGCCAGGCAT-ATAGGATGTA  247

seq1  TTTGTAATCCCGGAACTGGAGGTGAAGTCAGGCAGATCCTTGGGACTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATCCCGGAACTGGAGGTGAAGTCAGGCAGATCCTTGGGACTTTA  297

seq1  CTGACCAGCCAGTCTAGCCTAATCGTGAGCCCGTCTCAAAGAAGATGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGCCAGTCTAGCCTAATCGTGAGCCCGTCTCAAAGAAGATGAAA  347

seq1  ACTGTTCCTGAGTGTTCACACCTGAGGGTGTCCTCTGGCCTCCATATGCA  449
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTGTTCCTGAGTGTTCACACATGAGGGTGTCCTCTGGCCTCCATATGCA  397

seq1  CACGCACACACTTCGCACATGCACATGGACATGCACACACATTCATAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCACACACTTCGCACATGCACATGGACATGCACACACATTCATAAAA  447

seq1  AGTTCATCAAGGTGAGGATCCCATATTTGTTTGGTGCTTATCAAGAAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCAAGGTGAGGATCCCATATTTGTTTGGTGCTTATCAAGAAGGA  497

seq1  AATGAAAGCCTCGTTATTGTTTCTGCATTCAACAGGAAAATGTATACAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGCCTCGTTATTGTTTCTGCATTCAACAGGAAAATGTATACAGG  547

seq1  GAACAAAATTTAAGACTTTGGGTTTTTCTTACTATTTTTTATAGTGCTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAATTTAAGACTTTGGGTTTTTCTTACTATTTTTTATAGTGCTGA  597

seq1  GGCTTTATAGCAGGCCTTCAACACATGCTAGGCAAACACTTTACTGCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATAGCAGGCCTTCAACACATGCTAGGCAAACACTTTACTGCTGT  647

seq1  GCTATCCCCAGGCCTTAAGTTCTTATATAGTGTAATATTTTGTAATGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCCCAGGCCTTAAGTTCTTATATAGTGTAATATTTTGTAATGTCT  697

seq1  GTAATTTCAGATTTTCATTATGATTTGTTTGCTCAGTTCTGCAACTAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTCAGATTTTCATTATGATTTGTTTGCTCAGTTCTGCAACTAATG  747

seq1  AATGCAAAGAAATTAGGCAGTTCTCTCTTAAGAAATTTGAAGAACGTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAGAAATTAGGCAGTTCTCTCTTAAGAAATTTGAAGAACGTGAA  797

seq1  AGTAAAGTGGTTCTGAATTTGAACAAAATTGCTAATGACATATTTTAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTGGTTCTGAATTTGAACAAAATTGCTAATGACATATTTTAATA  847

seq1  GTTCATAATTACATAGATAATCCATGCTTCAATATGTTTTCACAAAATAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAATTACATAGATAATCCATGCTTCAATATGTTTTCACAAAATAA  897

seq1  ATTGTTTAAATACAAACAAATGGCATTAAATCTGCAGTAGAACCACTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTAAATACAAACAAATGGCATTAAATCTGCAGTAGAACCACTTAA  947

seq1  TCACAATGGGCAGCTGTTCAGAGCTATCAATACCATTTCATTGTTCATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGGGCAGCTGTTCAGAGCTATCAATACCATTTCATTGTTCATTT  997

seq1  ATTTTTATAATTAGAAGGAATAATGAGGTAGGATACATACACTACAGTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATAATTAGAAGGAATAATGAGGTAGGATACATACACTACAGTAT  1047

seq1  TAAGTGGTTGTGAAACCTCATTTTCTTCTCCTGAATAATAAATACTGCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGTTGTGAAACCTCATTTTCTTCTCCTGAATAATAAATACTGCTT  1097

seq1  CCTGAAACAGGAGCCCACATGTCTCATTCTTGTAGTTATACATTGCATTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACAGGAGCCCACATGTCTCATTCTTGTAGTTATACATTGCATTC  1147

seq1  TTACTGATGTAAATGCTTTTGGAACCATTTGCATTTGAGTGAATTC  1245
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGATGTAAATGCTTTTGGAACCATTTGCATTTGAGTGAATTC  1193