BAC Information

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BAC

Clone NameB6Ng01-090L13
Chromosome4 (Build37)11 (Build37)
Map Location 41,981,459 - 41,981,64725,017,438 - 25,018,542
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAqp7, Aqp3, Nol6, Ube2r2, Ubap2, Wdr40a, Ubap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt, Il11ra1, Ccl27, LOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539
Downstream geneLOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090L13.bB6Ng01-090L13.g
ACCDH902947DH902948
length6251,099
definitionDH902947|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L13, 5' end.DH902948|Mus musculus domesticus DNA, BAC clone: B6Ng01-090L13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,981,459 - 41,981,647)(25,017,438 - 25,018,542)
sequence
gaattcctttaatttatggtaattacattttcaattcttaaagataattt
ctgtgctattgagagtttctttcgatttcttacctaaacctgtatcctaa
gtatttcctctatgtttccttaatcaatgtcaacatttcttgttctaaat
atggtctttggtccactttgaattgattattgtatagaatgtatgattta
atttcattctcttgcaaggactatccaatttgatcagtactgttcattca
ataattttttttccaatggacatttttgaccgggttgtcagaacccttat
aagtttctatagccatatcagtctacctctggatcttctgttatctttta
ttaaactatgtatgggtctttgtccctattgctttgtagtataggttgag
gccatacaatatgatcacattggttatgatatttctacttagaatggctt
taactgcctgtgatagtttgtgtttccatataaaccttggtttttttgtt
tagatctgtgaaatatgacaatagaatttcataatgatgttttatttgac
cagattgccttttccttccttcttttcttcctttcttcctttcttccttc
ctttcttccttccttccttccttcc
gaattccacttgcattgcaaatgaaagtggccacttcacgcctctgtcca
atcgtgatagaaattgatgtcttccaccagcagacaaaaacctatcctta
agagtgttactgtgttttgctttacaccatgatagttatattttagtcag
gatttcagttgctgtgctagaacaatggccaacagaggctggggaggaaa
gggtttatttccgttcacaactttcaggtcctactccatccctgagagaa
atcagggcaggaactcttaagtaagaggaacctggaggcaggagctaaaa
cagaacctatggagggcactgcttgatgccttggtctccatggtttgctt
ggcctgctttcttatagaccccagaaccaccaacccagtggtggtactga
acactataaactgggccctccccatcaaccatcactcaagaaaatgtcac
atagacatgtccatagtccagtctagttggagcattttctcagatgaggt
tccctattccaaaatggtgcaagcttgtttcaagttgacataaaaccagc
cagcacagcttagagatttttttcttatctctctcagtcctccttgcctt
ttgtaagatcaattttaaaaccatatttctaatgctactttccttgatat
cacaggttcttatgtaataaaattattatcattctactcttcaaaattcc
catatgactaaatttttataacatttggttattgaggaaatgtctctaga
taactaaatacactctaccatttcattcatcccttgtcatatattctaag
gcttttggcattactagaaaagttataaatgagtttcttctttcacttaa
tttatattgagattatatatcttggtgaatgtaatcataaataccatttg
ctaatgccttactgcttatatatatgagagctttccttttatgagagctt
ttatgagagtttaattttttgtttggtatttattttgttgaaatttctac
atttctacactgattccctttctggaccatacagctagtagttcttacaa
taatatagctgggttattttccattaaccctccttttacctttgccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_41981459_41981647
seq2: B6Ng01-090L13.b_609_672 (reverse)

seq1  GGAAGGAAGGAAGGAAGGAAGAAAGGACGGAAGGGAGGGAGGGAGGGAGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGGAGGGAGGGAGAGAGAGAGAAAGAGAGAAAGAAAGAGAGAGAGAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGA  150
                              |  || ||| ||| ||| ||||||| 
seq2  ------------------------GGAAGGAAGGAAGGAAGGAAGAAAGG  26

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAAAGAAGGAAGGAA  189
      ||| ||||||| ||||||| ||| |||||||||||||||
seq2  AAGGAAGAAAGGAAGAAAGGAAG-AAAAGAAGGAAGGAA  64

seq1: chr11_25017438_25018542
seq2: B6Ng01-090L13.g_71_1169

seq1  GAATTCCACTTGCATTGCAAATGAAAGTGGCCACTTCACGCCTCTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTGCATTGCAAATGAAAGTGGCCACTTCACGCCTCTGTCCA  50

seq1  ATCGTGATAGAAATTGATGTCTTCCACCAGCAGACAAAAACCTATCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGATAGAAATTGATGTCTTCCACCAGCAGACAAAAACCTATCCTTA  100

seq1  AGAGTGTTACTGTGTTTTGCTTTACACCATGATAGTTATATTTTAGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTACTGTGTTTTGCTTTACACCATGATAGTTATATTTTAGTCAG  150

seq1  GATTTCAGTTGCTGTGCTAGAACAATGGCCAACAGAGGCTGGGGAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTTGCTGTGCTAGAACAATGGCCAACAGAGGCTGGGGAGGAAA  200

seq1  GGGTTTATTTCCGTTCACAACTTTCAGGTCCTACTCCATCCCTGAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTATTTCCGTTCACAACTTTCAGGTCCTACTCCATCCCTGAGAGAA  250

seq1  ATCAGGGCAGGAACTCTTAAGTAAGAGGAACCTGGAGGCAGGAGCTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGCAGGAACTCTTAAGTAAGAGGAACCTGGAGGCAGGAGCTAAAA  300

seq1  CAGAACCTATGGAGGGCACTGCTTGATGCCTTGGTCTCCATGGTTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCTATGGAGGGCACTGCTTGATGCCTTGGTCTCCATGGTTTGCTT  350

seq1  GGCCTGCTTTCTTATAGACCCCAGAACCACCAACCCAGTGGTGGTACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCTTTCTTATAGACCCCAGAACCACCAACCCAGTGGTGGTACTGA  400

seq1  ACACTATAAACTGGGCCCTCCCCATCAACCATCACTCAAGAAAATGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATAAACTGGGCCCTCCCCATCAACCATCACTCAAGAAAATGTCAC  450

seq1  ATAGACATGTCCATAGTCCAGTCTAGTTGGAGCATTTTCTCAGATGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATGTCCATAGTCCAGTCTAGTTGGAGCATTTTCTCAGATGAGGT  500

seq1  TCCCTATTCCAAAATGGTGCAAGCTTGTTTCAAGTTGACATAAAACCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTCCAAAATGGTGCAAGCTTGTTTCAAGTTGACATAAAACCAGC  550

seq1  CAGCACAGCTTAGAGATTTTTTTCTTATCTCTCTCAGTCCTCCTTGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGCTTAGAGATTTTTTTCTTATCTCTCTCAGTCCTCCTTGCCTT  600

seq1  TTGTAAGATCAATTTTAAAACCATATTTCTAATGCTACTTTCCTTGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGATCAATTTTAAAACCATATTTCTAATGCTACTTTCCTTGATAT  650

seq1  CACAGGTTCTTATGTAATAAAATTATTATCATTCTACTCTTCAAAATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTCTTATGTAATAAAATTATTATCATTCTACTCTTCAAAATTCC  700

seq1  CATATGACTAAATTTTTATAACA-TTGGTTATTGAGGAAATGTCTCTAGA  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATATGACTAAATTTTTATAACATTTGGTTATTGAGGAAATGTCTCTAGA  750

seq1  TAACTAAATACACTCTACCATTTCATTCATCCCTTGTCATATATTCTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAATACACTCTACCATTTCATTCATCCCTTGTCATATATTCTAAG  800

seq1  GCTTTTGGCATTACTAGAAAAGTTATAAATGAGTTTCTTCTTTCACTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGCATTACTAGAAAAGTTATAAATGAGTTTCTTCTTTCACTTAA  850

seq1  TTTATATTGAGATTATATATCTT-GTGAATGTAATCATAAATACCATTTG  898
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTATATTGAGATTATATATCTTGGTGAATGTAATCATAAATACCATTTG  900

seq1  CT-ATGCCTTACTGCTTATATATATGAGAGCTTTCCTTTTATGAGAGCTT  947
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCCTTACTGCTTATATATATGAGAGCTTTCCTTTTATGAGAGCTT  950

seq1  TTATGAGAGTTTATTTTTTTGTTTGGTATTTATTTTGTTTGAAATTTTCT  997
      ||||||||||||| ||||||||||||||||||||||| |||||| |||||
seq2  TTATGAGAGTTTAATTTTTTGTTTGGTATTTATTTTG-TTGAAA-TTTCT  998

seq1  ACATTTCTACACTGATTTCCTTTCTTGAACCATACAGCTAGTAGTTCTTA  1047
      ||||||||||||||||| |||||| || ||||||||||||||||||||||
seq2  ACATTTCTACACTGATTCCCTTTC-TGGACCATACAGCTAGTAGTTCTTA  1047

seq1  CAAATAATTATGCTGGGTATATTTTCCCATATAACCTTCCTTTTACTTTT  1097
      | ||||||   ||||||| |||||| |||| ||||| ||||||||| |||
seq2  C-AATAATATAGCTGGGT-TATTTT-CCAT-TAACCCTCCTTTTACCTTT  1093

seq1  GGCCCTTT  1105
      |  |||||
seq2  G--CCTTT  1099