BAC Information

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BAC

Clone NameB6Ng01-090N15
Chromosome11 (Build37)
Map Location 78,204,537 - 78,324,429
singlet/doubletdoublet
Overlap geneOTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787
Upstream geneSsh2, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1
Downstream genePoldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090N15.bB6Ng01-090N15.g
ACCDH903041DH903042
length1,1571,081
definitionDH903041|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N15, 5' end.DH903042|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,204,537 - 78,205,714)(78,323,325 - 78,324,429)
sequence
gaattcattaatggaaaagagtccaggataaagtcaaatatttttttctt
tcttttcttttccttatatatattttttttttccttcgagacagggtttc
tctgtatagccctggctgtcctggaactcactttgtagaccaggttggcc
tcgaactcagaaatccgcctgcctctgcctccctagtgctgggattaaag
gcgtgcgccaccacacccggctagtcaaatatttttgagggttgaacact
gacagtaagttcacaaagaagcagggcaaacacaaaaagtataacaagtg
gatttgagataatagatgtgaagtaaataagaaagtgaaattctacttca
tgctctctgttaacagtgacaggatgtggaggcaggaaggccaagagctc
acaaatgcacgagctgctgtctcaagaacacagaagcaaaacaaaaactg
acagaaggcaggtgtgtggcacacatctggaatcctagcacttaggaggc
tgaggcaggagcattgccataagttcaaggccggactgaattacatagtg
agttccaggtcagcctgggctacagagtgagattcgaagaaaacgaacaa
attaattgcatacctcccaaacccataatagacagaaaagtggaaaacca
cacaaatcaatacaaaaatacagaaaatattttataaacgtgtgaagtag
ggaagataccttgaagcatgacatcaaatcaggaaggcatacaggaatat
attgacagattttactcagtaaaaattcaaaatttatttagaacaaaata
taatataaacaaagttaaaatataaaagttgcagctagaaggaactgttg
caacatgtatggtgaaggattagtatccataatatataaagagctcctcc
aaatcaattaaaggtcaatccctcaggaaaaaaatagacaataaacatga
atttacaaacaaactaccaatgaccagagcacaaatgaagactttcaact
tcattatattgaaagaatggaagttaattcacagtcatggactctggaaa
gccctggtgggatccaggagatgcagtgcaagtgaaattctttcttcctt
cagcttgaaggtaccactcaccactaccaccacattgtatgatacaaatt
ttggtca
gaattcaagagacagctaggtgtatctaaatgaacttaaggttagactgg
tttcataatgagttctgagccagcctggtctacatgatatgtgtatgtat
atacatatatcagccttgtctcaacaatatatctatatatgagagaaaga
agtgagcggtccccaatcaagagtcgccgcgttcttttcagatctaatcc
tttctgaggcgtattttcccccatatcactctccagtgcctaccgagttc
tcatatatccagtccaaaagccttctcataaaccccaggtttactacttc
catcttaacttcagtgaaatatgatatatatatatatatatatatacgag
ttatatatgaaatatatgagttaaatatgaaatatatatgagtttacagg
gatggccgtgttttatttgggtaaaaattagggctacccacttctgtcat
cttagctttccagcctcagctgcacgtgtcattatgtggaaccttattct
ttccagattccaggctgtatcttcatgaactcctagaaggcagtgacatc
tactttccagagattgtgaagcctccccgggtatgtaacagaaatttgtg
agagttgggtacaggttttattaatcagcttttgggtttgaaatcttata
ttttaattctttggaaaagctgagctgtggctcagtgggatagtacttga
caaggccctagcaccaataaatacataaaatttgggggccagtgaaatac
ctcaatgagtgggggcacttgctaccaagcatggcaggcaacctgggttc
tgtccttaggacccccatggtggagggaaaggctgactcccaaaggttat
ctcttccctgcacacatgtactgctgctcgggtttatgtgcatgtacaaa
ggatttaaaaaacaaaccaaagctgttgggagtctaagatcagagagaac
tctctgacgcttgaaactgagactcagtgacatttccaagcagtgcagca
taacagtgtgcggtgtccagcaccattaggagtacagggtctttgaaact
gtaaagaatcattcttctcacgtgctaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78204537_78205714
seq2: B6Ng01-090N15.b_49_1205

seq1  GAATTCATTAATGGAAAAGAGTCCAGGATAAAGTCAAATATTTTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATGGAAAAGAGTCCAGGATAAAGTCAAATATTTTTTTCTT  50

seq1  TCTTTTCTTTTCCTTATATATATTTTTTTTTTCCTTCGAGACAGGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTCCTTATATATATTTTTTTTTTCCTTCGAGACAGGGTTTC  100

seq1  TCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTGGCC  150

seq1  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCTAGTGCTGGGATTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCTAGTGCTGGGATTAAAG  200

seq1  GCGTGCGCCACCACACCCGGCTAGTCAAATATTTTTGAGGGTTGAACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCCACCACACCCGGCTAGTCAAATATTTTTGAGGGTTGAACACT  250

seq1  GACAGTAAGTTCACAAAGAAGCAGGGCAAACACAAAAAGTATAACAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAAGTTCACAAAGAAGCAGGGCAAACACAAAAAGTATAACAAGTG  300

seq1  GATTTGAGATAATAGATGTGAAGTAAATAAGAAAGTGAAATTCTACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGATAATAGATGTGAAGTAAATAAGAAAGTGAAATTCTACTTCA  350

seq1  TGCTCTCTGTTAACAGTGACAGGATGTGGAGGCAGGAAGGCCAAGAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGTTAACAGTGACAGGATGTGGAGGCAGGAAGGCCAAGAGCTC  400

seq1  ACAAATGCACGAGCTGCTGTCTCAAGAACACAGAAGCAAAACAAAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCACGAGCTGCTGTCTCAAGAACACAGAAGCAAAACAAAAACTG  450

seq1  ACAGAAGGCAGGTGTGTGGCACACATCTGGAATCCTAGCACTTAGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGCAGGTGTGTGGCACACATCTGGAATCCTAGCACTTAGGAGGC  500

seq1  TGAGGCAGGAGCATTGCCATAAGTTCAAGGCCGGACTGAATTACATAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGGAGCATTGCCATAAGTTCAAGGCCGGACTGAATTACATAGTG  550

seq1  AGTTCCAGGTCAGCCTGGGCTACAGAGTGAGATTCGAAGAAAACGAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGTCAGCCTGGGCTACAGAGTGAGATTCGAAGAAAACGAACAA  600

seq1  ATTAATTGCATACCTCCCAAACCCATAATAGACAGAAAAGTGGAAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGCATACCTCCCAAACCCATAATAGACAGAAAAGTGGAAAACCA  650

seq1  CACAAATCAATACAAAAATACAGAAAATATTTTATAAACGTGTGAAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCAATACAAAAATACAGAAAATATTTTATAAACGTGTGAAGTAG  700

seq1  GGAAGATACCTTGAAGCATGACATCAAATCAGGAAGGCATACAGGAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATACCTTGAAGCATGACATCAAATCAGGAAGGCATACAGGAATAT  750

seq1  ATTGACAGATTTTACTCAGTAAAAATTCAAAATTTATTTAGAACAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGATTTTACTCAGTAAAAATTCAAAATTTATTTAGAACAAAATA  800

seq1  TAATATAAACAAAGTTAAAATATAAAAGTTGCAGCTAGAAGGAACTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAACAAAGTTAAAATATAAAAGTTGCAGCTAGAAGGAACTGTTG  850

seq1  CAACATGTATGGTGAAGGATTAGTATCCATAATATATAAAGAGCTCCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTATGGTGAAGGATTAGTATCCATAATATATAAAGAGCTCCTCC  900

seq1  AAATCAATTAAAGGTCAATCCCTCAGGAAAAAAAATAGACAATAAACATG  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAATCAATTAAAGGTCAATCCCTCAGG-AAAAAAATAGACAATAAACATG  949

seq1  AATTTACAAACAAACTACCAATGACCAGAGCACAAATGAAAGACTTTCAA  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATTTACAAACAAACTACCAATGACCAGAGCACAAATG-AAGACTTTCAA  998

seq1  CTTCATTAATAATTGAGAGAATGGAAGTTAATTCAACAGTCATGGACTCT  1050
      ||||||||   ||||| ||||||||||||||||| |||||||||||||||
seq2  CTTCATTA--TATTGAAAGAATGGAAGTTAATTC-ACAGTCATGGACTCT  1045

seq1  GGGAAGGCCCTGGTGGGATCCCAGGAGATTGGCCAGTGCCACAGTGAGAG  1100
       |||| ||||||||||||| |||||||||    ||||||   ||||| | 
seq2  -GGAAAGCCCTGGTGGGAT-CCAGGAGAT---GCAGTGC--AAGTGAAAT  1088

seq1  TCTTTCTTTCTTTCAAGCCTTTAAAAGTACACACACACACATACACACAC  1150
      |||||||| |||   |||  || || |||| ||| |||   ||| ||| |
seq2  TCTTTCTTCCTT--CAGC--TTGAAGGTAC-CACTCACCACTAC-CAC-C  1131

seq1  ACATTTGTATGATACAAATTTTGTGTCA  1178
      ||| ||||||||||||||||||| ||||
seq2  ACA-TTGTATGATACAAATTTTG-GTCA  1157

seq1: chr11_78323325_78324429
seq2: B6Ng01-090N15.g_70_1150 (reverse)

seq1  AAATAAGCACGTGAGAAGAATGATATTCTTTTACATGTTTCCAAAGACCA  50
      |||| |||||||||||||||||  |||| |||||| |||| |||||||| 
seq2  AAATTAGCACGTGAGAAGAATG--ATTC-TTTACA-GTTT-CAAAGACC-  44

seq1  CTGTACTCCTAATGGTGCTGGGACACCGCACACCTGTTATGCTTGCACTG  100
      ||||||||||||||||||| |||||||||||| ||||||||| |||||||
seq2  CTGTACTCCTAATGGTGCT-GGACACCGCACA-CTGTTATGC-TGCACTG  91

seq1  CTTTGGAAAATGGTTCACTGAGTCTCAGTTTTCCAAAGCCGTCAGAGAGG  150
      |||  | |||||  |||||||||||||||||  |||   |||||||||| 
seq2  CTT--GGAAATG--TCACTGAGTCTCAGTTT--CAA--GCGTCAGAGAG-  132

seq1  TTTCTCTCCCTGATCTTAGACTCCCAACAGCTTTTGGTTTTGTTTTTTTA  200
       ||||||  |||||||||||||||||||||| ||||||||   |||||||
seq2  -TTCTCT--CTGATCTTAGACTCCCAACAGC-TTTGGTTT--GTTTTTTA  176

seq1  AATCCTTTGTACATGCACATAAACCCGAGCAGCAGTACATGTGTGCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTGTACATGCACATAAACCCGAGCAGCAGTACATGTGTGCAGGG  226

seq1  AAGAGATAACCTTTGGGAGTCAGCCTTTCCCTCCACCATGGGGGTCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAACCTTTGGGAGTCAGCCTTTCCCTCCACCATGGGGGTCCTAA  276

seq1  GGACAGAACCCAGGTTGCCTGCCATGCTTGGTAGCAAGTGCCCCCACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAACCCAGGTTGCCTGCCATGCTTGGTAGCAAGTGCCCCCACTCA  326

seq1  TTGAGGTATTTCACTGGCCCCCAAATTTTATGTATTTATTGGTGCTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTATTTCACTGGCCCCCAAATTTTATGTATTTATTGGTGCTAGGG  376

seq1  CCTTGTCAAGTACTATCCCACTGAGCCACAGCTCAGCTTTTCCAAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCAAGTACTATCCCACTGAGCCACAGCTCAGCTTTTCCAAAGAAT  426

seq1  TAAAATATAAGATTTCAAACCCAAAAGCTGATTAATAAAACCTGTACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAAGATTTCAAACCCAAAAGCTGATTAATAAAACCTGTACCCA  476

seq1  ACTCTCACAAATTTCTGTTACATACCCGGGGAGGCTTCACAATCTCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCACAAATTTCTGTTACATACCCGGGGAGGCTTCACAATCTCTGGA  526

seq1  AAGTAGATGTCACTGCCTTCTAGGAGTTCATGAAGATACAGCCTGGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATGTCACTGCCTTCTAGGAGTTCATGAAGATACAGCCTGGAATC  576

seq1  TGGAAAGAATAAGGTTCCACATAATGACACGTGCAGCTGAGGCTGGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAATAAGGTTCCACATAATGACACGTGCAGCTGAGGCTGGAAAG  626

seq1  CTAAGATGACAGAAGTGGGTAGCCCTAATTTTTACCCAAATAAAACACGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGACAGAAGTGGGTAGCCCTAATTTTTACCCAAATAAAACACGG  676

seq1  CCATCCCTGTAAACTCATATATATTTCATATTTAACTCATATATTTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTGTAAACTCATATATATTTCATATTTAACTCATATATTTCATA  726

seq1  TATAACTCGTATATATATATATATATATATATCATATTTCACTGAAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTCGTATATATATATATATATATATATCATATTTCACTGAAGTTA  776

seq1  AGATGGAAGTAGTAAACCTGGGGTTTATGAGAAGGCTTTTGGACTGGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAGTAGTAAACCTGGGGTTTATGAGAAGGCTTTTGGACTGGATA  826

seq1  TATGAGAACTCGGTAGGCACTGGAGAGTGATATGGGGGAAAATACGCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAACTCGGTAGGCACTGGAGAGTGATATGGGGGAAAATACGCCTC  876

seq1  AGAAAGGATTAGATCTGAAAAGAACGCGGCGACTCTTGATTGGGGACCGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGATTAGATCTGAAAAGAACGCGGCGACTCTTGATTGGGGACCGC  926

seq1  TCACTTCTTTCTCTCATATATAGATATATTGTTGAGACAAGGCTGATATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTTTCTCTCATATATAGATATATTGTTGAGACAAGGCTGATATA  976

seq1  TGTATATACATACACATATCATGTAGACCAGGCTGGCTCAGAACTCATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATACATACACATATCATGTAGACCAGGCTGGCTCAGAACTCATTA  1026

seq1  TGAAACCAGTCTAACCTTAAGTTCATTTAGATACACCTAGCTGTCTCTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAGTCTAACCTTAAGTTCATTTAGATACACCTAGCTGTCTCTTG  1076

seq1  AATTC  1105
      |||||
seq2  AATTC  1081