BAC Information

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BAC

Clone NameB6Ng01-093I09
Chromosome11 (Build37)
Map Location 53,904,251 - 53,905,261
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4
Downstream geneP4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093I09.bB6Ng01-093I09.g
ACCDH904988DH904989
length1,0111,072
definitionDH904988|Mus musculus domesticus DNA, BAC clone: B6Ng01-093I09, 5' end.DH904989|Mus musculus domesticus DNA, BAC clone: B6Ng01-093I09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtggcaaccaggggttccgttcccaccacctgatagctttgca
tattcatgacttcataaactggaggcaggctagacataacagatagctta
ggaccctgtgaccttatctggttcgggacagtacacaccacccgtttata
atcctgcacaggcaagccgagttctctcacctgcacacacactaaacaat
gaacctgaaaacctcagaaccctcctgtccccccacccccaccccacatc
aggtacacacgctctcatctctgaacaatgctataagtttccctgcccct
cttgacaagcacacttagacagtttctattcaagtgtattcccaacatat
tctgctctgaaatacagaaggacaaatcaatcaatccagcttgaactggt
ttgtcacacattcacagtaagacaagttgtgccatctacaatggttttag
gggaaaccccctatttaccaccttatgattatgctaaacataattaggca
tgcctttggttaaagtcagatgggaaaggatatatgtacagtagaaaaaa
tattgtatgatctaatctattgatcaaaatagagaattagccaaactata
ccttttaatatccagcctcttctcttggtcgccataagaggaaactcttg
agtctctcacacgtgtgcccgcctgcactcccgacagtatgtcccctcta
taatctgtgttaatgctttgctcccaacaaacttattttgattctttgca
aatctgtgtgagccctggttttcagatctctgaatgagagaggccaagac
cctggggaaccttagcccagatcctcaacaccagcaaaaagatagaaata
aaaggatattagaaaatggttatctggggtaactcgtacaagatcaccac
atggggtagaagtagctacccctagccccaagctaccactccaatcagag
gaacctggggaccatgggactatggccagttccctgagtcaagtatccaa
ccctgctgtgg
gaattcctgatttgatttacatagttttaggaagttagataattgataga
aagtttaaggagatggtttaagttgttttgccagaaagatgtaataaata
gaattaagagtagaatgtggccttttcccttgtagaataatgaaggctac
atatgttagtaaaggagtactgtgagcttttttatatgttacaagcatgc
aattgtattagagaaaaaagtaggcttgggatcagttaaatgatcaaaga
aaacatttcattctgagttgggtctgagtttctggatattgtgatctata
gatttggccacaggttttgctgcataccataaaaagacagggttatgaat
aaagagtaaataattctattataagtataagaatagagggtagatgatta
gccagtttagctgaacaagacttcaaaaataagatgtaagatagatgaag
atctatttcttggtaaatacaaattgtcatcagctaagcagatgaaaata
caaattgtcatcatagcataattaaaaatacatttagtccaacttcaaaa
gtcccatagtctataacagtctcaacaatattaaaagttcagtctcttct
gagattcatctaatcacttaactgtactcccctcaaaacttaaaaagcag
attacatacttccaacatcacaggatatacgttatcattccataatgtct
tggttggaatactgaccaaagcaggaccaaaaaacctgctgggcaagcta
caaactctgcatatccatgtctgatattaaagtgctttcatatttccaac
tcctttcatctttgttgactgtaacaaacttccttcccttggctggctcc
acttctttagcagttttctctcagcagtatccatggctctgacatctcta
gcatcttgggtatacaggcacttaaacttatactccttgtccatgtatag
atccaacacatgatctgagatctccaaagggttgggcacttccccagctc
tgctctccgtagaccctaggtccgggtgataccctccactgccccatctt
ttcctggagtctcccatggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53904251_53905261
seq2: B6Ng01-093I09.b_43_1053 (reverse)

seq1  CCACAAGCAGGGCTGGGATACTTGGACACATGGGAACAGGCCATAGTCAC  50
      |||| ||||||| | |||||||| ||| || |||||| |||||||||| |
seq2  CCAC-AGCAGGG-TTGGATACTT-GACTCA-GGGAACTGGCCATAGTCCC  46

seq1  ACTGGTGCCCCAGGTTCCTCTGA-TGGAGTGGTAGCTTGGGGCTAGGGGT  99
      | |||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  A-TGGT-CCCCAGGTTCCTCTGATTGGAGTGGTAGCTTGGGGCTAGGGGT  94

seq1  AGCTACTTCTACCCCATGTGGTGATCTTGTACGAGTTA-CCCAGATAACC  148
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGCTACTTCTACCCCATGTGGTGATCTTGTACGAGTTACCCCAGATAACC  144

seq1  ATTTTCTAATATCC-TTTATTTCTATCTTTTTGCTGGTGTTTGGGATCTG  197
      |||||||||||||| ||||||||||||||||||||||||||  |||||||
seq2  ATTTTCTAATATCCTTTTATTTCTATCTTTTTGCTGGTGTTGAGGATCTG  194

seq1  GGCT-AGGTT-CCCAGGTTCTTGGCCTCTCTCATTCAGAGATCTGAAAAC  245
      |||| ||||| |||||| ||||||||||||||||||||||||||||||||
seq2  GGCTAAGGTTCCCCAGGGTCTTGGCCTCTCTCATTCAGAGATCTGAAAAC  244

seq1  CAGGGCTCACACAGATTTGCAAAGAATCAAAATAAGTTTGTTGGGAGCAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTCACACAGATTTGCAAAGAATCAAAATAAGTTTGTTGGGAGCAA  294

seq1  AGCATTAACACAGATTATAGA-GGGACATACTGTCGGGAGTGCAGGCGGG  344
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCATTAACACAGATTATAGAGGGGACATACTGTCGGGAGTGCAGGCGGG  344

seq1  CACACGTGTGAGAGACTCAAGAGTTTCCTCTTATGGCGACCAAGAGAAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTGTGAGAGACTCAAGAGTTTCCTCTTATGGCGACCAAGAGAAGA  394

seq1  GGCTGGATATTAAAAGGTATAGTTTGGCTAATTCTCTATTTTGATCAATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGATATTAAAAGGTATAGTTTGGCTAATTCTCTATTTTGATCAATA  444

seq1  GATTAGATCATACAATATTTTTTCTACTGTACATATATCCTTTCCCATCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGATCATACAATATTTTTTCTACTGTACATATATCCTTTCCCATCT  494

seq1  GACTTTAACCAAAGGCATGCCTAATTATGTTTAGCATAATCATAAGGTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAACCAAAGGCATGCCTAATTATGTTTAGCATAATCATAAGGTGG  544

seq1  TAAATAGGGGGTTTCCCCTAAAACCATTGTAGATGGCACAACTTGTCTTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGGGGGTTTCCCCTAAAACCATTGTAGATGGCACAACTTGTCTTA  594

seq1  CTGTGAATGTGTGACAAACCAGTTCAAGCTGGATTGATTGATTTGTCCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATGTGTGACAAACCAGTTCAAGCTGGATTGATTGATTTGTCCTT  644

seq1  CTGTATTTCAGAGCAGAATATGTTGGGAATACACTTGAATAGAAACTGTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTCAGAGCAGAATATGTTGGGAATACACTTGAATAGAAACTGTC  694

seq1  TAAGTGTGCTTGTCAAGAGGGGCAGGGAAACTTATAGCATTGTTCAGAGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGCTTGTCAAGAGGGGCAGGGAAACTTATAGCATTGTTCAGAGA  744

seq1  TGAGAGCGTGTGTACCTGATGTGGGGTGGGGGTGGGGGGACAGGAGGGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCGTGTGTACCTGATGTGGGGTGGGGGTGGGGGGACAGGAGGGTT  794

seq1  CTGAGGTTTTCAGGTTCATTGTTTAGTGTGTGTGCAGGTGAGAGAACTCG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTTTCAGGTTCATTGTTTAGTGTGTGTGCAGGTGAGAGAACTCG  844

seq1  GCTTGCCTGTGCAGGATTATAAACGGGTGGTGTGTACTGTCCCGAACCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTGTGCAGGATTATAAACGGGTGGTGTGTACTGTCCCGAACCAG  894

seq1  ATAAGGTCACAGGGTCCTAAGCTATCTGTTATGTCTAGCCTGCCTCCAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTCACAGGGTCCTAAGCTATCTGTTATGTCTAGCCTGCCTCCAGT  944

seq1  TTATGAAGTCATGAATATGCAAAGCTATCAGGTGGTGGGAACGGAACCCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTCATGAATATGCAAAGCTATCAGGTGGTGGGAACGGAACCCC  994

seq1  TGGTTGCCACAGAATTC  1011
      |||||||||||||||||
seq2  TGGTTGCCACAGAATTC  1011