BAC Information

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BAC

Clone NameB6Ng01-093M19
Chromosome11 (Build37)
Map Location 120,374,215 - 120,553,068
singlet/doubletdoublet
Overlap geneLOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1
Upstream geneNptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10
Downstream geneStra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093M19.bB6Ng01-093M19.g
ACCDH905184DH905185
length9221,043
definitionDH905184|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M19, 5' end.DH905185|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,374,215 - 120,375,136)(120,552,020 - 120,553,068)
sequence
gaattcccattaagctaaccctccactatttcacacccctccttatccca
agctgtgagaggtggacataactggcacaccagtgccaacccgtctggaa
aaggaagccttgctggagcaggtccctggcatctgaccattctttcacca
aatgatctgtggctcaaaatgttttccaaataccaagaattcaccctgaa
agactctgggctgaattgtaagtaattttactcattccgtgggagattga
tggaggaaagggcaaaggtcatgagagatcttgcctgaggctaagatgtg
aagaagtgggagaaatcagctccattaggaagcagcaagccctaaatcaa
cagcatggcagacgccctccctggggagaggggtgtggcaagggctcatc
cactgccaggaggcagcagagccgggcacataaccaggaattgttaggga
ctcttggacagaactgaaatatcagttggctgatatatgcatgcctttgc
ctagctagcagttcctcggccagttaaaaaggagcagccatccggaaggt
ggtgggacacacctttaacgccagcactctggaggcagaggcaggtggat
ctctgagcctggtctgaagagctagttctaggacaatcagggctacacaa
agagactatgtctaaaacaaaaaacaaaaacaaacaaacaaaaaaacaaa
aaccaaaccaaccaaacaaacaaacaaaacaaaacaaccccccccaaaat
gaaaacaaacaaaacccccaaacaaacaaaacagaaaaagaaagaaagag
caagcaaatacacagacccacttgtaccgagcaagaagggggacgctcgt
gttcccagcagcacagccagcatcaccaaacacagaagctgagcactgat
gggtggatagtgtggagtgccc
gaattcaagaccaacctggtctacaaagtgagttccagggctacacagag
ataccctgtcttggggagcaggaggagcaaggtgtgtgcctgatagccca
cctatgattctagcctccaaaagcagagacaaggaatcaccagagcaagc
tagttaacaagatcagccacatgggtcaactctgatttgactgagaggct
gcctcaatgaatatggtgaaagttgaccaaggatgactgacatcagcctc
aggcttccatatacctgtgttcacatgttcactacattcccatacccaca
ccatgcacacagaagcctacacacttgtaaaagatgcataaatacatgca
cactcatgaaaatgttaaaaaagctgggtgtggtggcaatgccattaatc
ccggttctcaggaggcagagactggaagatagttctctgagtgaagtggc
caactggatatccagagccaattccatattagccaaggctgcagggtgat
tgataccttgtctttaaaacaaaaataatatattttttttggttttttgt
tttttttgttttttttttttgagacagggtttctctgtatagccttggct
gtcctggagctcactttgtagaccaggctggcctggaactcagaaatctg
cctgcctctgcctcccaagtgctgggattaaaggcatgcaccaccacgcc
cggcaaaataataatttttaacattttaaggaaaataaagaaatcatcct
ccttctggaacagctgccttcctttagacaccggaccggcctcagagctc
caggccatggtcacttacagcctgccccagagctaacttcaggcaatgtg
ctggccagagaaagaccctctccagccctaggcagaaaccacaggtcctg
ctgaaccaagtcctgcttggctggactctggaagactggctcttcccaga
acaaacctctttaagagagagctgacagtccaggaacttctcatgtttcc
tggaggaagccctcagtgaggttatcatacaaggtacttgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120374215_120375136
seq2: B6Ng01-093M19.b_46_967

seq1  GAATTCCCATTAAGCTAACCCTCCACTATTTCACACCCCTCCTTATCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTAAGCTAACCCTCCACTATTTCACACCCCTCCTTATCCCA  50

seq1  AGCTGTGAGAGGTGGACATAACTGGCACACCAGTGCCAACCCGTCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAGAGGTGGACATAACTGGCACACCAGTGCCAACCCGTCTGGAA  100

seq1  AAGGAAGCCTTGCTGGAGCAGGTCCCTGGCATCTGACCATTCTTTCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGCCTTGCTGGAGCAGGTCCCTGGCATCTGACCATTCTTTCACCA  150

seq1  AATGATCTGTGGCTCAAAATGTTTTCCAAATACCAAGAATTCACCCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTGTGGCTCAAAATGTTTTCCAAATACCAAGAATTCACCCTGAA  200

seq1  AGACTCTGGGCTGAATTGTAAGTAATTTTACTCATTCCGTGGGAGATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGGGCTGAATTGTAAGTAATTTTACTCATTCCGTGGGAGATTGA  250

seq1  TGGAGGAAAGGGCAAAGGTCATGAGAGATCTTGCCTGAGGCTAAGATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAAGGGCAAAGGTCATGAGAGATCTTGCCTGAGGCTAAGATGTG  300

seq1  AAGAAGTGGGAGAAATCAGCTCCATTAGGAAGCAGCAAGCCCTAAATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGGGAGAAATCAGCTCCATTAGGAAGCAGCAAGCCCTAAATCAA  350

seq1  CAGCATGGCAGACGCCCTCCCTGGGGAGAGGGGTGTGGCAAGGGCTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGCAGACGCCCTCCCTGGGGAGAGGGGTGTGGCAAGGGCTCATC  400

seq1  CACTGCCAGGAGGCAGCAGAGCCGGGCACATAACCAGGAATTGTTAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCAGGAGGCAGCAGAGCCGGGCACATAACCAGGAATTGTTAGGGA  450

seq1  CTCTTGGACAGAACTGAAATATCAGTTGGCTGATATATGCATGCCTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGACAGAACTGAAATATCAGTTGGCTGATATATGCATGCCTTTGC  500

seq1  CTAGCTAGCAGTTCCTCGGCCAGTTAAAAAGGAGCAGCCATCCGGAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAGCAGTTCCTCGGCCAGTTAAAAAGGAGCAGCCATCCGGAAGGT  550

seq1  GGTGGGACACACCTTTAACGCCAGCACTCTGGAGGCAGAGGCAGGTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACACACCTTTAACGCCAGCACTCTGGAGGCAGAGGCAGGTGGAT  600

seq1  CTCTGAGCCTGGTCTGAAGAGCTAGTTCTAGGACAATCAGGGCTACACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCCTGGTCTGAAGAGCTAGTTCTAGGACAATCAGGGCTACACAA  650

seq1  AGAGACTATGTCTAAAACAAAAAACAAAAACAAACAAACAAAAAAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTATGTCTAAAACAAAAAACAAAAACAAACAAACAAAAAAACAAA  700

seq1  AACCAAACCAACCAAACAAACAAACAAAACAAAACAACCCCCCCCAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCAACCAAACAAACAAACAAAACAAAACAACCCCCCCCAAAAT  750

seq1  GAAAACAAACAAAACCCCCAAACAAACAAAACAGAAAAAGAAAGAAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAACAAAACCCCCAAACAAACAAAACAGAAAAAGAAAGAAAGAG  800

seq1  CAAGCAAATACACAGACCCACTTGTACCGAGCAAGAAGGGGGACGCTCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAATACACAGACCCACTTGTACCGAGCAAGAAGGGGGACGCTCGT  850

seq1  GTTCCCAGCAGCACAGCCAGCATCACCAAACACAGAAGCTGAGCACTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGCAGCACAGCCAGCATCACCAAACACAGAAGCTGAGCACTGAT  900

seq1  GGGTGGATAGTGTGGAGTGCCC  922
      ||||||||||||||||||||||
seq2  GGGTGGATAGTGTGGAGTGCCC  922

seq1: chr11_120552020_120553068
seq2: B6Ng01-093M19.g_71_1113 (reverse)

seq1  ACCCAAGTACCCTGTATGAATAACCTCACTGAGGACTTCCT-CAGGAAAC  49
      ||||||||||| |||||| ||||||||||||||| |||||| ||||||||
seq2  ACCCAAGTACCTTGTATG-ATAACCTCACTGAGGGCTTCCTCCAGGAAAC  49

seq1  ATGGGAAGTTCCTGGACTGTCAGCTCTGCTCCTATATGAGTTTGTTCCTG  99
      ||| ||||||||||||||||||||||| ||| || |   ||||||| |||
seq2  ATGAGAAGTTCCTGGACTGTCAGCTCT-CTCTTAAAGAGGTTTGTT-CTG  97

seq1  GGAAGAGCCCAGTCTTCCAGAGTCCAGCCAAGCAGGACTTGGTTCAGCAG  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAG-CCAGTCTTCCAGAGTCCAGCCAAGCAGGACTTGGTTCAGCAG  146

seq1  GACCTGTGGTTTCTGGCCTAGGGCTGGAGAGGGTCTTTCTCTGGCCAGCA  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GACCTGTGGTTTCT-GCCTAGGGCTGGAGAGGGTCTTTCTCTGGCCAGCA  195

seq1  CATTGCCTGAAGTTAGCTCTGGGGCAGGCTGTAAGGTGACCATGGCCTGG  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATTGCCTGAAGTTAGCTCTGGGGCAGGCTGTAA-GTGACCATGGCCTGG  244

seq1  AGCTCTGAGGCCGGTCCGGTGTCTTAAAGGAAGGCAGCTGTTCCAGAAGG  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCTCTGAGGCCGGTCCGGTGTC-TAAAGGAAGGCAGCTGTTCCAGAAGG  293

seq1  AGGATGATTTCTTTATTTTCCTTAAAATGTTAAAAATTATTATTTTGCCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATTTCTTTATTTTCCTTAAAATGTTAAAAATTATTATTTTGCCG  343

seq1  GGCGTGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  393

seq1  CAGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGAC  443

seq1  AGCCAAGGCTATACAGAGAAACCCTGTCTCAAAAAAAAAAAACAAAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGCTATACAGAGAAACCCTGTCTCAAAAAAAAAAAACAAAAAAA  493

seq1  ACAAAAAACCAAAAAAAATATATTATTTTTGTTTTAAAGACAAGGTATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACCAAAAAAAATATATTATTTTTGTTTTAAAGACAAGGTATCA  543

seq1  ATCACCCTGCAGCCTTGGCTAATATGGAATTGGCTCTGGATATCCAGTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTGCAGCCTTGGCTAATATGGAATTGGCTCTGGATATCCAGTTG  593

seq1  GCCACTTCACTCAGAGAACTATCTTCCAGTCTCTGCCTCCTGAGAACCGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCACTCAGAGAACTATCTTCCAGTCTCTGCCTCCTGAGAACCGG  643

seq1  GATTAATGGCATTGCCACCACACCCAGCTTTTTTAACATTTTCATGAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATGGCATTGCCACCACACCCAGCTTTTTTAACATTTTCATGAGTG  693

seq1  TGCATGTATTTATGCATCTTTTACAAGTGTGTAGGCTTCTGTGTGCATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATTTATGCATCTTTTACAAGTGTGTAGGCTTCTGTGTGCATGG  743

seq1  TGTGGGTATGGGAATGTAGTGAACATGTGAACACAGGTATATGGAAGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTATGGGAATGTAGTGAACATGTGAACACAGGTATATGGAAGCCT  793

seq1  GAGGCTGATGTCAGTCATCCTTGGTCAACTTTCACCATATTCATTGAGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGATGTCAGTCATCCTTGGTCAACTTTCACCATATTCATTGAGGC  843

seq1  AGCCTCTCAGTCAAATCAGAGTTGACCCATGTGGCTGATCTTGTTAACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCAGTCAAATCAGAGTTGACCCATGTGGCTGATCTTGTTAACTA  893

seq1  GCTTGCTCTGGTGATTCCTTGTCTCTGCTTTTGGAGGCTAGAATCATAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCTGGTGATTCCTTGTCTCTGCTTTTGGAGGCTAGAATCATAGG  943

seq1  TGGGCTATCAGGCACACACCTTGCTCCTCCTGCTCCCCAAGACAGGGTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATCAGGCACACACCTTGCTCCTCCTGCTCCCCAAGACAGGGTAT  993

seq1  CTCTGTGTAGCCCTGGAACTCACTTTGTAGACCAGGTTGGTCTTGAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTAGCCCTGGAACTCACTTTGTAGACCAGGTTGGTCTTGAATTC  1043