BAC Information

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BAC

Clone NameB6Ng01-095E02
Chromosome11 (Build37)
Map Location 44,414,103 - 44,573,774
singlet/doubletdoublet
Overlap geneEbf1
Upstream geneFabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b, Il12b, Ublcp1, 3732413I11Rik
Downstream geneLOC382510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095E02.bB6Ng01-095E02.g
ACCDH906245DH906246
length1,1791,118
definitionDH906245|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E02, 5' end.DH906246|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,572,581 - 44,573,774)(44,414,103 - 44,415,235)
sequence
gaattcaaagcattcggtaaggaaatctgaccaggcaaatgaatctgtat
agtcttggctgggggggtcagcattcaaaatagcaaaactgatatcccct
gtgtccttggagttccattctgagggacccagcagcaagcacatgccctt
tggctgataaggaggaggcgaactccagaagaaaagaagctggggagctc
agagcagcagctcttggccaaccagcaccagagcactggatcactgacga
tccatgccgcatttattgataatgaagaaggcatcgtaagttgtcaggaa
aactcaagctgattcaaaactgccactaaaataaatgttaattgtttgga
aaaaataattgattgatattgtataatggcacacggtaaaaatgcattct
agaaatagcaatacagctacatgggaaagtgaaagagcagagaaagtggg
tgcattatatatgcacatacatatataatatatacagatgaatatttatg
tgaccctgggaaagggaaggacttactaagcataaacaaaaagggtgagc
caagcaccaaatcacatgagagactgaggcaggattcccacaaattcaga
gccatttcagcagtacggtgtgaattccaggtcggtttgggctacaaaac
aacaaaagctaagttgggtagatgtctcagcaggtaaagacactcaccac
caagactgataacctcagttagaactctgggacccacatggttcgggacg
ggggcctgaactctttccagttgtcttctggactctgttctgggacacta
aagcacacatatgcacaaagcaaatacagaaaaataagaacaaattttta
aagaaatgattaataaacatgtaattaattaaaataattacattaacatt
ttagatttctaaactgaacacaaaccagaaaaaaatattttaaagacttg
ggggggtgggagtagtttcatgatggtttcaaagtgtgtctctaagttct
ttaagtgcatgccaacttcagaaagactcaactgcccactgaagagctga
cgagaatttgctgatgagcaaagactgacttcaacatgaaacctcaaggc
tggtcagaaagaccttcagttctttcagttgctcctggggaagcgaagta
cttgttctggtaacctgacacttggagag
gaattcataatttctctggcttcttaggcagagaggtaacattttccatc
tatgaatacatgatcaactttttggttgacacatagtatctgtacatatt
cacaacaatgccatatttttgtcatgtaaaagaacaatgtttctcacaca
tgcagagttaacaaaaatagaatatttctattaaaatatttaagaagggt
gctactagaatcaaggatacttcaaagtataaaatattgccaacttagat
tataaaaccctttgatttgtaaatataaaataacccacactttactgatt
attaagtttaaagaagttgtgaacaatttgaaaaatcagtttcctaaaga
tgtttgatacaaggtgttttgaatgttcagcctatcccagaagatatttg
ttcttacttatataacacacgtatcatgccacccagttttagaatggttc
cctttttatccacagttttcctttctgtggtttcagtttcttggggtcag
ctgaaaataataaatagaaaattctagaactaaacaattgctgagtgtta
aattgcacactgttgtgagtggtaaggccagcaggcttcctgccgccctg
ttcctcttgaactggacatgactcatgtatttatctacacatacatgctt
atgtgctgcccatcctttggtcccatagcaaccacctcagatatccaact
gactgtcacagcatcaccgtgctgatgctgatgctcagctgactcctgtt
ttatataaccatggctccagggtgcaagggtagtgatgctggcagtttaa
ttacaggatagtgttacttgttccattccatcattcgttatttgtcagta
tcttgtcgcatctaattaatggatttagctttagcgtaggcacacattag
tgtatgggaaacaaacctgagcatatgacgctcggggttgtttaggtttc
agcctccgtcagagttgttgcactcacccttcatggatcagtgagtgagg
ataggagtccagctagtgactgtagtttgaaaagttgagccacgaacagt
catgatcatcaggtacagagttgtttattctctttcacagtcatgatgag
tcagtggaggtgactgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_44572581_44573774
seq2: B6Ng01-095E02.b_47_1225 (reverse)

seq1  CTCTCCCAGCTGTCAGGTGTCACCAGAACAAGGCACCTGGC-TCCCCAGG  49
      |||||| || ||||||  || |||||||||| | || | || ||||||||
seq2  CTCTCCAAG-TGTCAG--GTTACCAGAACAA-GTACTTCGCTTCCCCAGG  46

seq1  AGCAAACTGGAAAGAAACTGAAGTGCCTTCTGACCCAGCCTTGAGGTTTC  99
      ||| |||| ||||| ||||||||  | |||||| ||||||||||||||||
seq2  AGC-AACT-GAAAG-AACTGAAGGTCTTTCTGA-CCAGCCTTGAGGTTTC  92

seq1  ATGTTGGAGTCAGTTCTTTTGCTCATCAGCAAATTCTCGTCCAGCTCCCT  149
      |||||| |||||||   ||||||||||||||||||||||| |||||  ||
seq2  ATGTTGAAGTCAGT--CTTTGCTCATCAGCAAATTCTCGT-CAGCT--CT  137

seq1  TCAGTGGGCAGTTGAGTCTCTCTGAAGTTGGCATGCAACTTAAAGAACTT  199
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TCAGTGGGCAGTTGAGTCTTTCTGAAGTTGGCATGC-ACTTAAAGAACTT  186

seq1  AGAGGACACACTTTGAAACCATCATGAAACTACTCCCA-CCCCCCAAGTC  248
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGA-GACACACTTTGAAACCATCATGAAACTACTCCCACCCCCCCAAGTC  235

seq1  TTTAAAATATTTTTTTTCTGGTTTGTGTTCAGTTTAGAAATCTAAAATGT  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATA-TTTTTTTCTGGTTTGTGTTCAGTTTAGAAATCTAAAATGT  284

seq1  TAATGTAATTATTTTTAATTAATTACATGTTTATTAATCATTTCTTTAAA  348
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAATTA-TTTTAATTAATTACATGTTTATTAATCATTTCTTTAAA  333

seq1  AATTTGTTCTTATTTTTCTGTATTTGCTTTGTGCATATGTGTGCCTTAGT  398
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTTGTTCTTATTTTTCTGTATTTGCTTTGTGCATATGTGTGCTTTAGT  383

seq1  GTCCCAGAACAGAGTCCAGAAGACAACTGGAAAGAGTTCAGGCCCCCGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAACAGAGTCCAGAAGACAACTGGAAAGAGTTCAGGCCCCCGTC  433

seq1  CCGAACCATGTGGGTCCCAGAGTTCTAACTGAGGTTATCAGTCTTGGTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAACCATGTGGGTCCCAGAGTTCTAACTGAGGTTATCAGTCTTGGTGG  483

seq1  TGAGTGTCTTTACCTGCTGAGACATCTACCCAACTTAGCTTTTGTTGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCTTTACCTGCTGAGACATCTACCCAACTTAGCTTTTGTTGTTT  533

seq1  TGTAGCCCAAACCGACCTGGAATTCACACCGTACTGCTGAAATGGCTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCAAACCGACCTGGAATTCACACCGTACTGCTGAAATGGCTCTG  583

seq1  AATTTGTGGGAATCCTGCCTCAGTCTCTCATGTGATTTGGTGCTTGGCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGGGAATCCTGCCTCAGTCTCTCATGTGATTTGGTGCTTGGCTC  633

seq1  ACCCTTTTTGTTTATGCTTAGTAAGTCCTTCCCTTTCCCAGGGTCACATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTTGTTTATGCTTAGTAAGTCCTTCCCTTTCCCAGGGTCACATA  683

seq1  AATATTCATCTGTATATATTATATATGTATGTGCATATATAATGCACCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATCTGTATATATTATATATGTATGTGCATATATAATGCACCCA  733

seq1  CTTTCTCTGCTCTTTCACTTTCCCATGTAGCTGTATTGCTATTTCTAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGCTCTTTCACTTTCCCATGTAGCTGTATTGCTATTTCTAGAA  783

seq1  TGCATTTTTACCGTGTGCCATTATACAATATCAATCAATTATTTTTTCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTTACCGTGTGCCATTATACAATATCAATCAATTATTTTTTCCA  833

seq1  AACAATTAACATTTATTTTAGTGGCAGTTTTGAATCAGCTTGAGTTTTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAACATTTATTTTAGTGGCAGTTTTGAATCAGCTTGAGTTTTCC  883

seq1  TGACAACTTACGATGCCTTCTTCATTATCAATAAATGCGGCATGGATCGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTTACGATGCCTTCTTCATTATCAATAAATGCGGCATGGATCGT  933

seq1  CAGTGATCCAGTGCTCTGGTGCTGGTTGGCCAAGAGCTGCTGCTCTGAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATCCAGTGCTCTGGTGCTGGTTGGCCAAGAGCTGCTGCTCTGAGC  983

seq1  TCCCCAGCTTCTTTTCTTCTGGAGTTCGCCTCCTCCTTATCAGCCAAAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCTTCTTTTCTTCTGGAGTTCGCCTCCTCCTTATCAGCCAAAGG  1033

seq1  GCATGTGCTTGCTGCTGGGTCCCTCAGAATGGAACTCCAAGGACACAGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCTTGCTGCTGGGTCCCTCAGAATGGAACTCCAAGGACACAGGG  1083

seq1  GATATCAGTTTTGCTATTTTGAATGCTGACCCCCCCAGCCAAGACTATAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAGTTTTGCTATTTTGAATGCTGACCCCCCCAGCCAAGACTATAC  1133

seq1  AGATTCATTTGCCTGGTCAGATTTCCTTACCGAATGCTTTGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATTTGCCTGGTCAGATTTCCTTACCGAATGCTTTGAATTC  1179

seq1: chr11_44414103_44415235
seq2: B6Ng01-095E02.g_67_1184

seq1  GAATTCATAATTTCTCTGGCTTCTTAGGCAGAGAGGTAACATTTTCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTTCTCTGGCTTCTTAGGCAGAGAGGTAACATTTTCCATC  50

seq1  TATGAATACATGATCAACTTTTTGGTTGACACATAGTATCTGTACATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATACATGATCAACTTTTTGGTTGACACATAGTATCTGTACATATT  100

seq1  CACAACAATGCCATATTTTTGTCATGTAAAAGAACAATGTTTCTCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAATGCCATATTTTTGTCATGTAAAAGAACAATGTTTCTCACACA  150

seq1  TGCAGAGTTAACAAAAATAGAATATTTCTATTAAAATATTTAAGAAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTTAACAAAAATAGAATATTTCTATTAAAATATTTAAGAAGGGT  200

seq1  GCTACTAGAATCAAGGATACTTCAAAGTATAAAATATTGCCAACTTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTAGAATCAAGGATACTTCAAAGTATAAAATATTGCCAACTTAGAT  250

seq1  TATAAAACCCTTTGATTTGTAAATATAAAATAACCCACACTTTACTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACCCTTTGATTTGTAAATATAAAATAACCCACACTTTACTGATT  300

seq1  ATTAAGTTTAAAGAAGTTGTGAACAATTTGAAAAATCAGTTTCCTAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTTAAAGAAGTTGTGAACAATTTGAAAAATCAGTTTCCTAAAGA  350

seq1  TGTTTGATACAAGGTGTTTTGAATGTTCAGCCTATCCCAGAAGATATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATACAAGGTGTTTTGAATGTTCAGCCTATCCCAGAAGATATTTG  400

seq1  TTCTTACTTATATAACACACGTATCATGCCACCCAGTTTTAGAATGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTTATATAACACACGTATCATGCCACCCAGTTTTAGAATGGTTC  450

seq1  CCTTTTTATCCACAGTTTTCCTTTCTGTGGTTTCAGTTTCTTGGGGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTATCCACAGTTTTCCTTTCTGTGGTTTCAGTTTCTTGGGGTCAG  500

seq1  CTGAAAATAATAAATAGAAAATTCTAGAACTAAACAATTGCTGAGTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATAATAAATAGAAAATTCTAGAACTAAACAATTGCTGAGTGTTA  550

seq1  AATTGCACACTGTTGTGAGTGGTAAGGCCAGCAGGCTTCCTGCCGCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCACACTGTTGTGAGTGGTAAGGCCAGCAGGCTTCCTGCCGCCCTG  600

seq1  TTCCTCTTGAACTGGACATGACTCATGTATTTATCTACACATACATGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTGAACTGGACATGACTCATGTATTTATCTACACATACATGCTT  650

seq1  ATGTGCTGCCCATCCTTTGGTCCCATAGCAACCACCTCAGATATCCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGCCCATCCTTTGGTCCCATAGCAACCACCTCAGATATCCAACT  700

seq1  GACTGTCACAGCATCACCGTGCTGATGCTGATGCTCAGCTGACTCCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCACAGCATCACCGTGCTGATGCTGATGCTCAGCTGACTCCTGTT  750

seq1  TTATATAACCATGGCTCCAGGGTGCAAGGGTAGTGATGCTGGCAGTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAACCATGGCTCCAGGGTGCAAGGGTAGTGATGCTGGCAGTTTAA  800

seq1  TTACAGGATAGTGTTACTTGTTCCATTCCATCATTCGTTATTTGTCAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGATAGTGTTACTTGTTCCATTCCATCATTCGTTATTTGTCAGTA  850

seq1  TCTTGTCGCATCTAATTAATGGATTTAGCTTTAGCGTAGGCACACATAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTTGTCGCATCTAATTAATGGATTTAGCTTTAGCGTAGGCACACATTAG  900

seq1  TGTATGGGAAACAAACCTGAGCAATATGACGCTCGGGGTTGTTTAGGTTT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTATGGGAAACAAACCTGAGC-ATATGACGCTCGGGGTTGTTTAGGTTT  949

seq1  CAGGCCTCCGTCAGAGTTGTTGCAACTCACCCTTCATGGATCAGGTGAGT  1000
      || |||||||||||||||||||| ||||||||||||||||||| ||||| 
seq2  CA-GCCTCCGTCAGAGTTGTTGC-ACTCACCCTTCATGGATCA-GTGAG-  995

seq1  TGAGGATAGGAGTTCCAGGCTAGTGGACTGTAGTTTGAAAAAGTTGAGCC  1050
      |||||||||||| |||| |||||| |||||||||||| ||||||||||||
seq2  TGAGGATAGGAG-TCCA-GCTAGT-GACTGTAGTTTG-AAAAGTTGAGCC  1041

seq1  ACGAAACAGTCATGATCATCAAGTACAGAGAGGTTGTTTTTTCCTCTTTC  1100
      ||| ||||||||||||||||| |||||||   ||||||| || |||||||
seq2  ACG-AACAGTCATGATCATCAGGTACAGA---GTTGTTTATT-CTCTTTC  1086

seq1  ACAGTCATGATGAAGTCAGTGGAGGTGACTGAG  1133
      |||||||||||| ||||||||||||||||||||
seq2  ACAGTCATGATG-AGTCAGTGGAGGTGACTGAG  1118