BAC Information

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BAC

Clone NameB6Ng01-096K05
Chromosome11 (Build37)
Map Location 43,556,800 - 43,557,888
singlet/doubletsinglet
Overlap geneTtc1
Upstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik
Downstream geneAdra1b, Il12b, Ublcp1, 3732413I11Rik, Ebf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096K05.b
ACCDH907232
length1,072
definitionDH907232|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K05, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtcttctaccttaaggatctacaacgtgcttataatacgtatg
tgcacacatacctgtagcttctagggtttttgtggcataaccaaatccaa
gtcctcacaaatgcaggccaggtgctctgctgctaaacttcatcttcatc
accaccttctgctttgttttttaaatgatccctcctaaggtaagttgctg
aatttctgtaacaaacctcgtgtaaacttacttagcactattttatggat
tgtgctttttaatcctaaataccttggtggcattgtgactacagagcacc
gttaagtgtcaaggaacacattgtgaagcatagtagctatttgttggaaa
cctacagtgtaccagctactaaagctaagatgttttttaagttaatgtgt
gagtggttaggactaagaccatgcacctaatagatggtaaaactggtttt
ccaactcaggtctcctgatagtcaagttcatgagctaccttatcagaact
gtctcagcaaatgaaagcaaatattgtttacccttcagaaacatacctct
agaaagtcagtgtagggttgttcagtttatagcatccatgtcaaacgttt
agtagccaagccggtccattagttccagcactcaggagatagaggctggc
agattgaagttcaaagctagactggtctgcaaagtgagatccagcacagc
caggactacccagagaaaccttgtctcaaaatacaaaacaaatcaaaaca
gaaagtcagtaggcagacttacttttaggggggtatgtgcctgtaaactc
aggaacttacccgtgctaagccagtgctctaccaccgagttaccccagcc
ctccgttagctgctatttactttctgctagtattataaggaatttttgtg
aaattatcattaaccaacaaatagaagaaatgttctcattggttattcag
attattaggaacagggagtatcatacctgatttttggcgatatgacactg
gaaaaaaaatccacatgagccaaaaagtgaatttcagcctaatctaatac
ttagatgtaatgagaatatgtc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_43556800_43557888
seq2: B6Ng01-096K05.b_42_1113 (reverse)

seq1  GACATATTCTCATTTACATCTTAAAGTTATTAGATTAAGGCTGAAAATTT  50
      |||||||||||| ||||||||  ||| ||||||||| |||||||||   |
seq2  GACATATTCTCA-TTACATCT--AAG-TATTAGATT-AGGCTGAAA---T  42

seq1  TCACTTTTTTGGCTCATTGTTGGATTTTTTTTTCCAGTGTCATAATCGCC  100
      |||| ||||||||||||   |||| |||||||||||||||||| ||||||
seq2  TCAC-TTTTTGGCTCAT--GTGGA-TTTTTTTTCCAGTGTCAT-ATCGCC  87

seq1  ATAAAATCAGGTATGATACTCCCCTGTTCCTAATAATCTGAAATAACCAA  150
      | |||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  A-AAAATCAGGTATGATACT-CCCTGTTCCTAATAATCTG-AATAACCAA  134

seq1  TGAGAACATTTCTTCTATTTTGTTGGTTAATGATAATTTCACAAAAATTC  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAGAACATTTCTTCTA-TTTGTTGGTTAATGATAATTTCACAAAAATTC  183

seq1  CTTATAATACTAGCAGAAAGTAAATAGCAGCTAACGGAGGGCTGGGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATACTAGCAGAAAGTAAATAGCAGCTAACGGAGGGCTGGGGTAA  233

seq1  CTCGGTGGTAGAGCACTGGCTTAGCACGGGTAAGTTCCTGAGTTTACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTGGTAGAGCACTGGCTTAGCACGGGTAAGTTCCTGAGTTTACAGG  283

seq1  CACATACCCCCCTAAAAGTAAGTCTGCCTACTGACTTTCTGTTTTGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCCCCCTAAAAGTAAGTCTGCCTACTGACTTTCTGTTTTGATTT  333

seq1  GTTTTGTATTTTGAGACAAGGTTTCTCTGGGTAGTCCTGGCTGTGCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTATTTTGAGACAAGGTTTCTCTGGGTAGTCCTGGCTGTGCTGGA  383

seq1  TCTCACTTTGCAGACCAGTCTAGCTTTGAACTTCAATCTGCCAGCCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTTGCAGACCAGTCTAGCTTTGAACTTCAATCTGCCAGCCTCTA  433

seq1  TCTCCTGAGTGCTGGAACTAATGGACCGGCTTGGCTACTAAACGTTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAGTGCTGGAACTAATGGACCGGCTTGGCTACTAAACGTTTGAC  483

seq1  ATGGATGCTATAAACTGAACAACCCTACACTGACTTTCTAGAGGTATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGCTATAAACTGAACAACCCTACACTGACTTTCTAGAGGTATGTT  533

seq1  TCTGAAGGGTAAACAATATTTGCTTTCATTTGCTGAGACAGTTCTGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGGTAAACAATATTTGCTTTCATTTGCTGAGACAGTTCTGATAA  583

seq1  GGTAGCTCATGAACTTGACTATCAGGAGACCTGAGTTGGAAAACCAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTCATGAACTTGACTATCAGGAGACCTGAGTTGGAAAACCAGTTT  633

seq1  TACCATCTATTAGGTGCATGGTCTTAGTCCTAACCACTCACACATTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTATTAGGTGCATGGTCTTAGTCCTAACCACTCACACATTAACT  683

seq1  TAAAAAACATCTTAGCTTTAGTAGCTGGTACACTGTAGGTTTCCAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACATCTTAGCTTTAGTAGCTGGTACACTGTAGGTTTCCAACAAA  733

seq1  TAGCTACTATGCTTCACAATGTGTTCCTTGACACTTAACGGTGCTCTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACTATGCTTCACAATGTGTTCCTTGACACTTAACGGTGCTCTGTA  783

seq1  GTCACAATGCCACCAAGGTATTTAGGATTAAAAAGCACAATCCATAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAATGCCACCAAGGTATTTAGGATTAAAAAGCACAATCCATAAAAT  833

seq1  AGTGCTAAGTAAGTTTACACGAGGTTTGTTACAGAAATTCAGCAACTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAAGTAAGTTTACACGAGGTTTGTTACAGAAATTCAGCAACTTAC  883

seq1  CTTAGGAGGGATCATTTAAAAAACAAAGCAGAAGGTGGTGATGAAGATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAGGGATCATTTAAAAAACAAAGCAGAAGGTGGTGATGAAGATGA  933

seq1  AGTTTAGCAGCAGAGCACCTGGCCTGCATTTGTGAGGACTTGGATTTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGCAGCAGAGCACCTGGCCTGCATTTGTGAGGACTTGGATTTGGT  983

seq1  TATGCCACAAAAACCCTAGAAGCTACAGGTATGTGTGCACATACGTATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACAAAAACCCTAGAAGCTACAGGTATGTGTGCACATACGTATTA  1033

seq1  TAAGCACGTTGTAGATCCTTAAGGTAGAAGACAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACGTTGTAGATCCTTAAGGTAGAAGACAGAATTC  1072