BAC Information

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BAC

Clone NameB6Ng01-096P22
Chromosome11 (Build37)
Map Location 26,484,134 - 26,485,234
singlet/doubletsinglet
Overlap geneVrk2
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl
Downstream geneEG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P22.bB6Ng01-096P22.g
ACCDH907486DH907487
length1,0921,133
definitionDH907486|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P22, 5' end.DH907487|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaagctaggcatgccgctctgttaccggtagagtgctggtgta
gcaggtgaaaggcatgctggatccccagcacctgacagaaggaggaggga
gtgggaagaatagtttattttctgttaaagttactggtgcttagacatcc
catgcctagtagagagttcacccaacagaaaacaccatacttttccctaa
aatagtaagaactggcttattaaatctacttcaattaaatattatccagg
tcattttgtttgttcatttgattgttgttgttgtttagtataaaaggatg
tttatttggcaagaaggggacctggagaagaaagtagaggcagagaaagg
aaggcatagaatgacagaaagggaggagagaggaagagaaaggggaagag
gtcggctggggatacctggagaagagacaggagacagacagagtggatgg
acagagagagggtgaactgttttattataaacatggaagtggctagattt
aatacagtggccactttttaaaatccctgcatgttatatgttatcagagg
agacatttcccaataagtcctataatctatacttaagtacatgttatata
atattttaaaagtacatttggaaaaataaacatatgctactcttacccca
aactccctaaaaatatacaaaatactgtctgtaaatatgaaattacaatg
tcttacacatagaccacacattgtactaaaaacaaagaaaagaaatccaa
caaaatttagtacctttttttctacaagttttcttttttttttttttccc
ataaaaccatcatctattagggtactggagagatggttcagaagttaaaa
acactggattttcttccaaaggaccagggtttattcctagcaccaacata
gcctgttcacacgtctgaaactccagttccaggggacctattacactcac
ccagacatacacgcagggagacactatgtacataaataaataattttttt
taaaaccttgttatactgtgaccttgcaggcatatctctgcacctgagag
tgccgaatagacagccaatgtgggtagggtgaaatgctggtc
gaattctttgttaagttctgtaccccatttttcagatatttgattttctt
gagtccttcttgagttctttagatattttggatattagtcccctatctga
tttaggattggtaaagatcctttcccaatctgttggtggcctttttgtct
tattgacagcgtcttttgccttacagagctttgtaatattatgaggtccc
atttgtggattctcgatctgtcagcacaagccattgctgttctgttcagg
aatctttccctagtggccatgtcttcgaggcttttcctcacttttttcct
atataagttttagtgtctgtggttttatgtggaggtccttgatccactta
gacttgagctttgtacaaggagaaaagaatggatcaatttgcatacttct
aaatgataactgccagttgtgccagcacgatttgttgaacaggcaatctt
tttttccaccgaattgttttagctccctttttaaagatcaagtgaccata
ggtgtgtgggttcatttctgggtctttaattcaattccattaatatacct
ttctgtcattgtaccagtaacatgtggttcttatcacaattgctctgtag
tacagctttaggtcaggcatggtgattccaccagaggttcttttatcatt
gagaagagtttttgccatcctaggttttttgttactctagatgaatttgc
aaattgtgctttctaactctttgaagaattgagttggagttttgatgggg
attgcattgaatctgtagattgctttcagcaagatagccattttttacta
tattaatcctgccagtccatgagcatggaagatctttccatctctgagat
cttctttaatttctttcttcagagacttgaagttcttatcatacagatct
ttcacttccttagttaaagtcacaccaaggtattaatattattttgtgac
tattgtgaagggtgttgtttccttaatttcttttcttcagcctgttatcc
tttgtgtagagaaaagcactgatttttttgagtattttaatatcagccta
cttcactgagcctgctatcagtgaacttcaggggtcactacaattaccat
tcttactactggcaaaagggaaatttgactcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26484134_26485234
seq2: B6Ng01-096P22.b_46_1137

seq1  GAATTCCTAAGCTAGGCATGCCGCTCTGTTACCGGTAGAGTGCTGGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGCTAGGCATGCCGCTCTGTTACCGGTAGAGTGCTGGTGTA  50

seq1  GCAGGTGAAAGGCATGCTGGATCCCCAGCACCTGACAGAAGGAGGAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGAAAGGCATGCTGGATCCCCAGCACCTGACAGAAGGAGGAGGGA  100

seq1  GTGGGAAGAATAGTTTATTTTCTGTTAAAGTTACTGGTGCTTAGACATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGAATAGTTTATTTTCTGTTAAAGTTACTGGTGCTTAGACATCC  150

seq1  CATGCCTAGTAGAGAGTTCACCCAACAGAAAACACCATACTTTTCCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTAGTAGAGAGTTCACCCAACAGAAAACACCATACTTTTCCCTAA  200

seq1  AATAGTAAGAACTGGCTTATTAAATCTACTTCAATTAAATATTATCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAGAACTGGCTTATTAAATCTACTTCAATTAAATATTATCCAGG  250

seq1  TCATTTTGTTTGTTCATTTGATTGTTGTTGTTGTTTAGTATAAAAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTTGTTCATTTGATTGTTGTTGTTGTTTAGTATAAAAGGATG  300

seq1  TTTATTTGGCAAGAAGGGGACCTGGAGAAGAAAGTAGAGGCAGAGAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGGCAAGAAGGGGACCTGGAGAAGAAAGTAGAGGCAGAGAAAGG  350

seq1  AAGGCATAGAATGACAGAAAGGGAGGAGAGAGGAAGAGAAAGGGGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATAGAATGACAGAAAGGGAGGAGAGAGGAAGAGAAAGGGGAAGAG  400

seq1  GTCGGCTGGGGATACCTGGAGAAGAGACAGGAGACAGACAGAGTGGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGCTGGGGATACCTGGAGAAGAGACAGGAGACAGACAGAGTGGATGG  450

seq1  ACAGAGAGAGGGTGAACTGTTTTATTATAAACATGGAAGTGGCTAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGGGTGAACTGTTTTATTATAAACATGGAAGTGGCTAGATTT  500

seq1  AATACAGTGGCCACTTTTTAAAATCCCTGCATGTTATATGTTATCAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTGGCCACTTTTTAAAATCCCTGCATGTTATATGTTATCAGAGG  550

seq1  AGACATTTCCCAATAAGTCCTATAATCTATACTTAAGTACATGTTATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTCCCAATAAGTCCTATAATCTATACTTAAGTACATGTTATATA  600

seq1  ATATTTTAAAAGTACATTTGGAAAAATAAACATATGCTACTCTTACCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAAAGTACATTTGGAAAAATAAACATATGCTACTCTTACCCCA  650

seq1  AACTCCCTAAAAATATACAAAATACTGTCTGTAAATATGAAATTACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCTAAAAATATACAAAATACTGTCTGTAAATATGAAATTACAATG  700

seq1  TCTTACACATAGACCACACATTGTACT-AAAACAAAGAAAAGAAATCCAA  749
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTTACACATAGACCACACATTGTACTAAAAACAAAGAAAAGAAATCCAA  750

seq1  CAAAATTTAGTACC-TTTTTTCTACAAGTTTTC--TTTTTTTTTTTTCCC  796
      |||||||||||||| ||||||||||||||||||  |||||||||||||||
seq2  CAAAATTTAGTACCTTTTTTTCTACAAGTTTTCTTTTTTTTTTTTTTCCC  800

seq1  ATAAAACCATCATCTATTAGGGTACTGGAGAGATGGTTCAGAAGTTAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCATCATCTATTAGGGTACTGGAGAGATGGTTCAGAAGTTAAAA  850

seq1  ACACTGGATTTTCTTCCAAAGGACCAGGGTTTTATTCCTAGCACCAACAT  896
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACACTGGATTTTCTTCCAAAGGACCAGGG-TTTATTCCTAGCACCAACAT  899

seq1  AG-CTGTTCACAACGTCTGAAACTCCAGTTCCAGGGGACCTAATACACTC  945
      || |||||||| |||||||||||||||||||||||||||||| |||||||
seq2  AGCCTGTTCAC-ACGTCTGAAACTCCAGTTCCAGGGGACCTATTACACTC  948

seq1  ACCCAGACATACACGCAGGGAGAACACTAATGTACATAAAATAAATTATT  995
      |||||||||||||||||||||| ||||| |||||||| |||||||| |||
seq2  ACCCAGACATACACGCAGGGAG-ACACT-ATGTACAT-AAATAAATAATT  995

seq1  TTTTAAAAACCTTTGTTAATAACTGTGACCTGCAAGGCCATATCTCTGCA  1045
      ||||  ||| | ||||||   ||||||||||   ||| ||||||||||||
seq2  TTTTTTAAAACCTTGTTA--TACTGTGACCTTGCAGG-CATATCTCTGCA  1042

seq1  CCCTGAGAGTGCCGATTAGGACAGCACAATGTGGTGTAGGGTGAAAATGG  1095
       |||||||||||||| || |||||| |||||||| |||||||||||   |
seq2  -CCTGAGAGTGCCGAATA-GACAGC-CAATGTGG-GTAGGGTGAAA--TG  1086

seq1  CTGGTC  1101
      ||||||
seq2  CTGGTC  1092