BAC Information

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BAC

Clone NameB6Ng01-098F11
Chromosome11 (Build37)
Map Location 104,018,866 - 104,131,765
singlet/doubletdoublet
Overlap geneCrhr1, 4933407P14Rik, Mapt
Upstream geneFmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
Downstream gene1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098F11.bB6Ng01-098F11.g
ACCDH908462DH908463
length7751,130
definitionDH908462|Mus musculus domesticus DNA, BAC clone: B6Ng01-098F11, 5' end.DH908463|Mus musculus domesticus DNA, BAC clone: B6Ng01-098F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,130,992 - 104,131,765)(104,018,866 - 104,020,014)
sequence
gaattccatagttggtgtccctggtcctgtctccttccctggaggattga
gctagaattgaacaatctggagacaccggcaggaatcgctgagtttcttg
tcttccacttgacactgggcaggcaggttatcagtgtcacgccttcctct
ggtttcccactgatagtaagcatcttgaaggtagagactcctgaatggac
tattttgagctactggacacctgtcaatacttgtgtctggggcaggcacc
tcttgaatggccgggagagtggaatagtggctacgtagagtgctctccac
actcccctcccgggtctcacttccaggcctgcatgtgctacctcacaagc
tttcctgagatgggagagagaggcagaggggtgggaaagagtgactggaa
agagaatatattggagggacccagatgggagaggcatgaggcccaaagaa
tgttgaaagtctgcacccgcttcaggggatagctccctaagggccacagg
agccagagactgctgggcctttgagctggacattaacaaagagcattgct
cccaagtttgggtcctgagactgttggggaaccagcagtcctgtacaatc
cagatgccgttgccacctctgggttccaaaggacaggagtggtgagcacc
agagctgcctacaaggacactcctgaccacggctccaggcaggtcttggg
ccaagaacatatcaggtttgcataatgaagcctttgagaggcccctgccg
gggaggggaatggtggagggaagat
gaattcctatgctctgaaatcggtctctgcacctgcttctcaaggcattc
ctctgcccttccgggctttagcctcagcatattctttattctttttgtcc
cagtctccgtaacacactccaaactcggtttgttcttttgcttgctttgt
cttttcccctcctcagagtgatgtggcgggtggcaaagcgcccttcacaa
tgcctggaaacattcacgccggccccttccctcctatgtcttatgggtcc
ccttcagagaccctgtctgtctactggatccccagggaccctgctctctt
tcccaggcgtggtcctcagggtgagcagcaaacgctggtcaagccgaagg
ttactggacagcggggaccccagtggggtggtctggggactggcggtgtg
ctgggcagcgctgttggaggccctgacatgccgcctgctccctgctgggt
ctgtgccctccttcctttcatttttccggcccctggagctcctagcggtg
gactgaaaccctagtgccaattcagcagctaagtgcatcagtggagcccg
gccgcagctcctgattggcccccatacgcttgactccgccctcccccgca
ctgccccacccacaggtcccagtgtggatgctctctgaaagaagctggtg
cctttgttgcctacccgttcgttccacctctcttctccagtcttgcagct
tttcaaagattttgatgctccaggattttctgagcttttaatataaaggt
cgctatatccccgtttgtcacttcagaagctttctgtgagcgtcggggac
aggcgcaaggaacatggcgcagagaggagggagcaccagccagatattgg
caaaggcagatgcggccagagacctctgtggagcattggagcttatggct
ggcctcagaagcccaggttcaaaatctaccccgcttcttgggtcgacccc
tgtgcattctgagccttcagtgttcctctctttaaagcaggagtagcgtc
caatgggcagttggtgtaagaccagattagattttaagttattaagggaa
gaccctagacatcgccattctgtctcaccaccatcacatggtctgtcctc
ctggatgagcaggtggcgggcgagctctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104130992_104131765
seq2: B6Ng01-098F11.b_45_819 (reverse)

seq1  ATCTTCCCTCCACCATTCCCCTCCCCGGCAGGGGCCTCTTCAAGGCTTCA  50
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  ATCTTCCCTCCACCATTCCCCTCCCCGGCAGGGGCCTCTCAAAGGCTTCA  50

seq1  TTATGC-AACCTGATATGTTCTTGGCCCAAGACCTGCCTGGAGCCGTGGT  99
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAAACCTGATATGTTCTTGGCCCAAGACCTGCCTGGAGCCGTGGT  100

seq1  CAGGAGTGTCCTTGTAGGCAGCTCTGGTGCTCACCACTCCTGTCCTTTGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGTCCTTGTAGGCAGCTCTGGTGCTCACCACTCCTGTCCTTTGG  150

seq1  AACCCAGAGGTGGCAACGGCATCTGGATTGTACAGGACTGCTGGTTCCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGAGGTGGCAACGGCATCTGGATTGTACAGGACTGCTGGTTCCCC  200

seq1  AACAGTCTCAGGACCCAAACTTGGGAGCAATGCTCTTTGTTAATGTCCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTCAGGACCCAAACTTGGGAGCAATGCTCTTTGTTAATGTCCAG  250

seq1  CTCAAAGGCCCAGCAGTCTCTGGCTCCTGTGGCCCTTAGGGAGCTATCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGCCCAGCAGTCTCTGGCTCCTGTGGCCCTTAGGGAGCTATCCC  300

seq1  CTGAAGCGGGTGCAGACTTTCAACATTCTTTGGGCCTCATGCCTCTCCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCGGGTGCAGACTTTCAACATTCTTTGGGCCTCATGCCTCTCCCA  350

seq1  TCTGGGTCCCTCCAATATATTCTCTTTCCAGTCACTCTTTCCCACCCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCCTCCAATATATTCTCTTTCCAGTCACTCTTTCCCACCCCTC  400

seq1  TGCCTCTCTCTCCCATCTCAGGAAAGCTTGTGAGGTAGCACATGCAGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCTCTCCCATCTCAGGAAAGCTTGTGAGGTAGCACATGCAGGCC  450

seq1  TGGAAGTGAGACCCGGGAGGGGAGTGTGGAGAGCACTCTACGTAGCCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGAGACCCGGGAGGGGAGTGTGGAGAGCACTCTACGTAGCCACT  500

seq1  ATTCCACTCTCCCGGCCATTCAAGAGGTGCCTGCCCCAGACACAAGTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTCTCCCGGCCATTCAAGAGGTGCCTGCCCCAGACACAAGTATT  550

seq1  GACAGGTGTCCAGTAGCTCAAAATAGTCCATTCAGGAGTCTCTACCTTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTGTCCAGTAGCTCAAAATAGTCCATTCAGGAGTCTCTACCTTCA  600

seq1  AGATGCTTACTATCAGTGGGAAACCAGAGGAAGGCGTGACACTGATAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTACTATCAGTGGGAAACCAGAGGAAGGCGTGACACTGATAACC  650

seq1  TGCCTGCCCAGTGTCAAGTGGAAGACAAGAAACTCAGCGATTCCTGCCGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCCAGTGTCAAGTGGAAGACAAGAAACTCAGCGATTCCTGCCGG  700

seq1  TGTCTCCAGATTGTTCAATTCTAGCTCAATCCTCCAGGGAAGGAGACAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAGATTGTTCAATTCTAGCTCAATCCTCCAGGGAAGGAGACAGG  750

seq1  ACCAGGGACACCAACTATGGAATTC  774
      |||||||||||||||||||||||||
seq2  ACCAGGGACACCAACTATGGAATTC  775

seq1: chr11_104018866_104020014
seq2: B6Ng01-098F11.g_69_1198

seq1  GAATTCCTATGCTCTGAAATCGGTCTCTGCACCTGCTTCTCAAGGCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGCTCTGAAATCGGTCTCTGCACCTGCTTCTCAAGGCATTC  50

seq1  CTCTGCCCTTCCGGGCTTTAGCCTCAGCATATTCTTTATTCTTTTTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCTTCCGGGCTTTAGCCTCAGCATATTCTTTATTCTTTTTGTCC  100

seq1  CAGTCTCCGTAACACACTCCAAACTCGGTTTGTTCTTTTGCTTGCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCGTAACACACTCCAAACTCGGTTTGTTCTTTTGCTTGCTTTGT  150

seq1  CTTTTCCCCTCCTCAGAGTGATGTGGCGGGTGGCAAAGCGCCCTTCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCCTCCTCAGAGTGATGTGGCGGGTGGCAAAGCGCCCTTCACAA  200

seq1  TGCCTGGAAACATTCACGCCGGCCCCTTCCCTCCTATGTCTTATGGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAAACATTCACGCCGGCCCCTTCCCTCCTATGTCTTATGGGTCC  250

seq1  CCTTCAGAGACCCTGTCTGTCTACTGGATCCCCAGGGACCCTGCTCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAGACCCTGTCTGTCTACTGGATCCCCAGGGACCCTGCTCTCTT  300

seq1  TCCCAGGCGTGGTCCTCAGGGTGAGCAGCAAACGCTGGTCAAGCCGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCGTGGTCCTCAGGGTGAGCAGCAAACGCTGGTCAAGCCGAAGG  350

seq1  TTACTGGACAGCGGGGACCCCAGTGGGGTGGTCTGGGGACTGGCGGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGACAGCGGGGACCCCAGTGGGGTGGTCTGGGGACTGGCGGTGTG  400

seq1  CTGGGCAGCGCTGTTGGAGGCCCTGACATGCCGCCTGCTCCCTGCTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCGCTGTTGGAGGCCCTGACATGCCGCCTGCTCCCTGCTGGGT  450

seq1  CTGTGCCCTCCTTCCTTTCATTTTTCCGGCCCCTGGAGCTCCTAGCGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCTCCTTCCTTTCATTTTTCCGGCCCCTGGAGCTCCTAGCGGTG  500

seq1  GACTGAAACCCTAGTGCCAATTCAGCAGCTAAGTGCATCAGTGGAGCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAACCCTAGTGCCAATTCAGCAGCTAAGTGCATCAGTGGAGCCCG  550

seq1  GCCGCAGCTCCTGATTGGCCCCCATACGCTTGACTCCGCCCTCCCCCGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCAGCTCCTGATTGGCCCCCATACGCTTGACTCCGCCCTCCCCCGCA  600

seq1  CTGCCCCACCCACAGGTCCCAGTGTGGATGCTCTCTGAAAGAAGCTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCACCCACAGGTCCCAGTGTGGATGCTCTCTGAAAGAAGCTGGTG  650

seq1  CCTTTGTTGCCTACCCGTTCGTTCCACCTCTCTTCTCCAGTCTTGCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTGCCTACCCGTTCGTTCCACCTCTCTTCTCCAGTCTTGCAGCT  700

seq1  TTTCAAAGATTTTGATGCTCCAGGATTTTCTGAGCTTTTAATATAAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGATTTTGATGCTCCAGGATTTTCTGAGCTTTTAATATAAAGGT  750

seq1  CGCTATATCCCCG-TTGTCACTTCAGAAGCTTTCTGTGAGCGTCGGGGAC  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CGCTATATCCCCGTTTGTCACTTCAGAAGCTTTCTGTGAGCGTCGGGGAC  800

seq1  AGGCGCAAGGAACATGGCGCAGAGAGGAGGGAGCACCAGCCAGATATTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCAAGGAACATGGCGCAGAGAGGAGGGAGCACCAGCCAGATATTGG  850

seq1  CAAAAGGCAGATGCCGGCCAGAGACCTCTGTGGAGCAGTGGAAGCTTATG  899
      | ||||||||||| ||||||||||||||||||||||| ||| ||||||||
seq2  C-AAAGGCAGATG-CGGCCAGAGACCTCTGTGGAGCATTGG-AGCTTATG  897

seq1  GCTGGCCTCAGAAGCCCAGGGTTCAAAATCTACCCCGCCTCTTGGGTCGA  949
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  GCTGGCCTCAGAAGCCCA-GGTTCAAAATCTACCCCGCTTCTTGGGTCGA  946

seq1  CCCCTGTGCATTCCTGAGCCTTCAGTGTTCCTTCTCTTTAAAGCAGGGAG  999
      |||||||||||| |||||||||||||||||| ||||||||||||| ||||
seq2  CCCCTGTGCATT-CTGAGCCTTCAGTGTTCC-TCTCTTTAAAGCA-GGAG  993

seq1  TTAGCGTCCAAATGGGCAGGTGGTGTAAGACCAGAATAGATTTTAGGTTA  1049
       |||||||| ||||||||| ||||||||||||||| ||||||||| ||||
seq2  -TAGCGTCC-AATGGGCAGTTGGTGTAAGACCAGATTAGATTTTAAGTTA  1041

seq1  TTTAAGGGAAGACCCTAGGACATTCGCCATTCTGCTTCGCCCACCATCAC  1099
       |||||||||||||||| |||| |||||||||||  ||  ||||||||||
seq2  -TTAAGGGAAGACCCTA-GACA-TCGCCATTCTGTCTC-ACCACCATCAC  1087

seq1  ATGGGTCCTGCTCCTCCCTGGATGAGCAGTGGGCGGAGTCAGAGCTCTAA  1149
      ||||   ||| |||| |||||||||||||  |||||     |||||||||
seq2  ATGG--TCTG-TCCT-CCTGGATGAGCAGGTGGCGG---GCGAGCTCTAA  1130