BAC Information

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BAC

Clone NameB6Ng01-098L17
Chromosome11 (Build37)
Map Location 49,804,485 - 49,932,602
singlet/doubletdoublet
Overlap geneRnf130
Upstream geneTgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c
Downstream geneLOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098L17.bB6Ng01-098L17.g
ACCDH908737DH908738
length3281,091
definitionDH908737|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L17, 5' end.DH908738|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,932,275 - 49,932,602)(49,804,485 - 49,805,591)
sequence
actttcatacaccaggctgcgtggcgacagggagttctggtgaaagacgt
gcccacctgaaagaggaacaagaaaaacagacttagtatggccttagcct
cggtcgctaggaccttggaggagaatgttgatcatctttgaaacactgtc
tcttatcactagaaggaaaataacgtagggattgcgttcccaagagctgg
ggctggaacgcagggcctctggcatgccaaaggcgctttgcacctttgag
ctgcctctgtgccttgcaagtatgatggacggacgtggttttcaattttg
ttttttgtttttttgtttggggggggga
gaattctctaattcagctcgaaggaaccaccactgtggctctctggcaaa
ggcaggagctctgatcccatactcagaatgtcggctcagtaatccaaggc
aggcccagaagtcgtgatcttaaccaacgtaggtgctggcaggcccccca
cactaacaacacagctgcccaggttttcgcacacagcactcaagccaatg
accatgtaaaagcatgaagcgttgaacgcagacagcaggcgagccccttt
agcctggcaagcacaacgggtgcaatttagttgactgctggcaaacattt
agaatgggataattatgcaaaacttgggcttctaaccactcctgaaaggt
ttccctgtcttccagctcctgcctggctatctatcaacgttacacttgtg
gtctctcccatgtctgtgcaacacacctgggctgtagtcaatccaggctc
ctttaggactacagactggcagggtgagagacaacagaccacccttctct
gttctggatgcccaaagaaagcatccccctgcccctccgtcaaggtgcag
gcataattagtatggagtgaaaacccacttcctggttcacggagaggtgc
ctgctcactgtgtcctcgtgtcacaggagtgggggagttctcttagatct
cttttgctcttatttatttttatttgcatttatttttttaagacagggtc
tccctgtttagcacagactagctttgagctttcaacctctggcctcagcc
tctggagtgctgggattatagacctgcactgtaatatatacatagtgccc
tcgggtctctttagtaatagcaataatctgttatgagggccttacattca
cgaccataatgacacttcccacgcatcactttcagctaccccacactatg
ctttcagtatgtccacccccctcccaaacttcatagttaaaaaactttat
tcttccagatgctgatagtttttgaaagtgggcttgaggtgagccatgaa
gttggtattaaatgagcagaggaggtggattagttttggaatgctcggga
gctggaatagtcatagagtcagtaggtgagcattagatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_49932275_49932602
seq2: B6Ng01-098L17.b_53_380 (reverse)

seq1  TCCCCCCCCCAAACAAAAAAACAAAAAACAAAATTGAAAACCACGTCCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCAAACAAAAAAACAAAAAACAAAATTGAAAACCACGTCCGT  50

seq1  CCATCATACTTGCAAGGCACAGAGGCAGCTCAAAGGTGCAAAGCGCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATACTTGCAAGGCACAGAGGCAGCTCAAAGGTGCAAAGCGCCTTT  100

seq1  GGCATGCCAGAGGCCCTGCGTTCCAGCCCCAGCTCTTGGGAACGCAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCCAGAGGCCCTGCGTTCCAGCCCCAGCTCTTGGGAACGCAATCC  150

seq1  CTACGTTATTTTCCTTCTAGTGATAAGAGACAGTGTTTCAAAGATGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTTATTTTCCTTCTAGTGATAAGAGACAGTGTTTCAAAGATGATCA  200

seq1  ACATTCTCCTCCAAGGTCCTAGCGACCGAGGCTAAGGCCATACTAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCCTCCAAGGTCCTAGCGACCGAGGCTAAGGCCATACTAAGTCT  250

seq1  GTTTTTCTTGTTCCTCTTTCAGGTGGGCACGTCTTTCACCAGAACTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTGTTCCTCTTTCAGGTGGGCACGTCTTTCACCAGAACTCCCT  300

seq1  GTCGCCACGCAGCCTGGTGTATGAAAGT  328
      ||||||||||||||||||||||||||||
seq2  GTCGCCACGCAGCCTGGTGTATGAAAGT  328

seq1: chr11_49804485_49805591
seq2: B6Ng01-098L17.g_68_1158

seq1  GAATTCTCTAATTCAGCTCGAAGGAACCACCACTGTGGCTCTCTGGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATTCAGCTCGAAGGAACCACCACTGTGGCTCTCTGGCAAA  50

seq1  GGCAGGAGCTCTGATCCCATACTCAGAATGTCGGCTCAGTAATCCAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGCTCTGATCCCATACTCAGAATGTCGGCTCAGTAATCCAAGGC  100

seq1  AGGCCCAGAAGTCGTGATCTTAACCAACGTAGGTGCTGGCAGGCCCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGAAGTCGTGATCTTAACCAACGTAGGTGCTGGCAGGCCCCCCA  150

seq1  CACTAACAACACAGCTGCCCAGGTTTTCGCACACAGCACTCAAGCCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACAACACAGCTGCCCAGGTTTTCGCACACAGCACTCAAGCCAATG  200

seq1  ACCATGTAAAAGCATGAAGCGTTGAACGCAGACAGCAGGCGAGCCCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTAAAAGCATGAAGCGTTGAACGCAGACAGCAGGCGAGCCCCTTT  250

seq1  AGCCTGGCAAGCACAACGGGTGCAATTTAGTTGACTGCTGGCAAACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCAAGCACAACGGGTGCAATTTAGTTGACTGCTGGCAAACATTT  300

seq1  AGAATGGGATAATTATGCAAAACTTGGGCTTCTAACCACTCCTGAAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGATAATTATGCAAAACTTGGGCTTCTAACCACTCCTGAAAGGT  350

seq1  TTCCCTGTCTTCCAGCTCCTGCCTGGCTATCTATCAACGTTACACTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTCTTCCAGCTCCTGCCTGGCTATCTATCAACGTTACACTTGTG  400

seq1  GTCTCTCCCATGTCTGTGCAACACACCTGGGCTGTAGTCAATCCAGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCCATGTCTGTGCAACACACCTGGGCTGTAGTCAATCCAGGCTC  450

seq1  CTTTAGGACTACAGACTGGCAGGGTGAGAGACAACAGACCACCCTTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGACTACAGACTGGCAGGGTGAGAGACAACAGACCACCCTTCTCT  500

seq1  GTTCTGGATGCCCAAAGAAAGCATCCCCCTGCCCCTCCGTCAAGGTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGATGCCCAAAGAAAGCATCCCCCTGCCCCTCCGTCAAGGTGCAG  550

seq1  GCATAATTAGTATGGAGTGAAAACCCACTTCCTGGTTCACGGAGAGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTAGTATGGAGTGAAAACCCACTTCCTGGTTCACGGAGAGGTGC  600

seq1  CTGCTCACTGTGTCCTCGTGTCACAGGAGTGGGGGAGTTCTCTTAGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACTGTGTCCTCGTGTCACAGGAGTGGGGGAGTTCTCTTAGATCT  650

seq1  CTTTTGCTCTTATTTATTTTTATTTGCATTTATTTTTTTAAGACAGGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTCTTATTTATTTTTATTTGCATTTATTTTTTTAAGACAGGGTC  700

seq1  TCCCTGTTTAGCACAGACTAGCTTTGAGCTTTCAACCTCTGGCCTCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTTAGCACAGACTAGCTTTGAGCTTTCAACCTCTGGCCTCAGCC  750

seq1  TCTGGAGTGCTGGGATTATAGACCTGCACTGTAATATATACATAGTGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTGCTGGGATTATAGACCTGCACTGTAATATATACATAGTGCCC  800

seq1  TCGGGTCTCTTTAGTAATAGCAATAATCTGTTATGAGGGCCTTACATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTCTCTTTAGTAATAGCAATAATCTGTTATGAGGGCCTTACATTCA  850

seq1  CGACCATAATGACACTTCCCACGCATCACTTTCAGCTACCCCACACTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCATAATGACACTTCCCACGCATCACTTTCAGCTACCCCACACTATG  900

seq1  CTTTCAGTATGTCCACCCCCCTCCCAAACTTCATAGTTAAAAAACTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTATGTCCACCCCCCTCCCAAACTTCATAGTTAAAAAACTTTAT  950

seq1  TCTTCCAAGATGCTGATAGTATTTGAAAGTGGGCTGGAGGTGAGGCCATG  1000
      |||||| ||||||||||||| |||||||||||||| ||||||| ||||||
seq2  TCTTCC-AGATGCTGATAGTTTTTGAAAGTGGGCTTGAGGTGA-GCCATG  998

seq1  AAGTGGGTATTAAATGAGGCCAAGAGGGAGGTGGGATTAGGTTTTGGGAT  1050
      |||| |||||||||||||    ||| |||||| |||||| ||||||| ||
seq2  AAGTTGGTATTAAATGAG---CAGA-GGAGGT-GGATTA-GTTTTGGAAT  1042

seq1  GCTCCGTGAGGCTGTGACTACAGTCATAAGGAGGTCATGAGGTGAGCATT  1100
      ||| || || |||| ||  | |||||||  || ||||  |||||||||||
seq2  GCT-CGGGA-GCTG-GA--ATAGTCATA--GA-GTCAGTAGGTGAGCATT  1084

seq1  AGATGAG  1107
      |||||||
seq2  AGATGAG  1091