BAC Information

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BAC

Clone NameB6Ng01-099D14
Chromosome11 (Build37)
Map Location 106,403,127 - 106,522,074
singlet/doubletdoublet
Overlap geneTex2, Pecam1
Upstream geneEG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277
Downstream geneGm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099D14.bB6Ng01-099D14.g
ACCDH909076DH909077
length1,1621,129
definitionDH909076|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D14, 5' end.DH909077|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,403,127 - 106,404,302)(106,520,925 - 106,522,074)
sequence
gaattctatgaacatggagtagtttccagaaagcatttgtgaatgggcca
gcaatgctcaaagaacatccacagcatacgtgaaactccgagtaaaccag
aagagcagatgatgcacacacagcaagcacatcacaggctcagtcagggc
ttgctggtctggaagtgggtgagggcagcagagacattgggaaaacaaat
gttttctgatttttggaaccatgttagtagcttatagggtggggaccatt
tgctcacatcacaaaactaatctaagttagcacggcagcagttctgctgg
cttgtagatgagcagtacagagcatcatggcagagctcactttccaccta
acatacttctccttgggaagggcaaagcccttgcccttctgctggagcag
atgtgggaggctccctgactgtcctggtggagggcaccagtacacctgcc
ctctacctatccctagggatgcttgcctgcaggaagacctgaggcctcca
gctttcagtgctggctcaactccactcaaccaccagcatctgtctgccct
ccaagacaggcacttccccttggcaactgttttagttacactatgatcac
agcaactcttatacaggacagcatctaactggggctggcttacaggttca
gaggttcagtctatcaacatcatggtggaagcatggcagcatgcaggaag
acatggttctacatcttggtctccaggcagcaggtgactgtgtatcacac
tgagcatagtatgagcacatgagacttcaaagcctgtgcccacaatgaca
cacttcctccaaaaaggccacacctcttaatagtgctactccccatgggc
caagccttcaaacacatgagtctgtgagggccaaacctattcaaaccagc
acagcagtggatcatcctccagcctaaagtgcagcctcctcaagtgaccc
tgtatagggcagccacagtcctcatgtgctacccatggtgaaattacaaa
tatgcgaggaaatagtagtgactgtcgtcttgagcaacctcttgggggct
gtgtgtgatgatgacgaacacctgcacctcactagccaaccaccttttga
actgtaggaagcattcaagaattgtatcgactctctggaatgcacagctt
ccctgaggtcct
gaattcttgctaaacagagctcattatgctctggacagacaggaaggcgc
tgacattctctgtggggatgaaggctgtctgtttaaggcgaagaggaatg
aggtgaacagcttccctagctgcacccacccaggctgctgagagcactgt
tgtgtggaaggggcaagggagcctgtttcatagacgaagaaatggggggc
ctgccttgctaaagcatccagaatccctgagaagcagaaacagaggtcac
gtctccaaaagccctggcctgggctttgtcctcactgttaagaagtgaca
caagccaggcttggtggtgcttagctgcagtaagtgatctctgtgagttc
aaggccagtctggtctacaatcctttagccctgagttccaggacagtcag
ggctctgttacacagagaaaccttgtctcaaaaggaaaaaaaaaaaaagt
gactgtctcccaagaggtgagaataatgacaagcttgctccacaggcaga
gtaggaccctgattaagaaaaaaaaaaaaaaaagttcactggctgttccc
atggccgtgtgtatctgtggccacccaaggcagggctgcgggccagccgt
cggaactttgccgaaccaacctagttactttgtcttccacccaaaggggc
tctctggacaaaggctctgaactccaggccagtggcagaatggctttccc
tcagcccccaaagtctactctggtcgcagggtgctcccagtacttgggct
agccctacctccaaaataataaaaccatctggcaggaactcagggcttcc
cagtcgttgagaagtgaattttgaatcttgaagcaaataactttttgttt
atgaaagaagcatgcagcgcttctctaataaccagccagcgtgggtcaga
agaaatgaacactgaattgcttcggcagggaaatgggaggggcttccttc
ctgaaatcaaacctggcaatcattcctccgcttgttatggcctgagaata
tctggacatgagacagccacttagcagctacgagctgattgtttgacttg
ctcaatgccagctgacttccttttctctgcatttttgtcttgttataacc
gggttgtggcccacgcgacagataccgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106403127_106404302
seq2: B6Ng01-099D14.b_44_1205

seq1  GAATTCTATGAACATGGAGTAGTTTCCAGAAAGCATTTGTGAATGGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAACATGGAGTAGTTTCCAGAAAGCATTTGTGAATGGGCCA  50

seq1  GCAATGCTCAAAGAACATCCACAGCATACGTGAAACTCCGAGTAAACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCTCAAAGAACATCCACAGCATACGTGAAACTCCGAGTAAACCAG  100

seq1  AAGAGCAGATGATGCACACACAGCAAGCACATCACAGGCTCAGTCAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGATGATGCACACACAGCAAGCACATCACAGGCTCAGTCAGGGC  150

seq1  TTGCTGGTCTGGAAGTGGGTGAGGGCAGCAGAGACATTGGGAAAACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTCTGGAAGTGGGTGAGGGCAGCAGAGACATTGGGAAAACAAAT  200

seq1  GTTTTCTGATTTTTGGAACCATGTTAGTAGCTTATAGGGTGGGGACCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGATTTTTGGAACCATGTTAGTAGCTTATAGGGTGGGGACCATT  250

seq1  TGCTCACATCACAAAACTAATCTAAGTTAGCACGGCAGCAGTTCTGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATCACAAAACTAATCTAAGTTAGCACGGCAGCAGTTCTGCTGG  300

seq1  CTTGTAGATGAGCAGTACAGAGCATCATGGCAGAGCTCACTTTCCACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGATGAGCAGTACAGAGCATCATGGCAGAGCTCACTTTCCACCTA  350

seq1  ACATACTTCTCCTTGGGAAGGGCAAAGCCCTTGCCCTTCTGCTGGAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTCTCCTTGGGAAGGGCAAAGCCCTTGCCCTTCTGCTGGAGCAG  400

seq1  ATGTGGGAGGCTCCCTGACTGTCCTGGTGGAGGGCACCAGTACACCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAGGCTCCCTGACTGTCCTGGTGGAGGGCACCAGTACACCTGCC  450

seq1  CTCTACCTATCCCTAGGGATGCTTGCCTGCAGGAAGACCTGAGGCCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTATCCCTAGGGATGCTTGCCTGCAGGAAGACCTGAGGCCTCCA  500

seq1  GCTTTCAGTGCTGGCTCAACTCCACTCAACCACCAGCATCTGTCTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGTGCTGGCTCAACTCCACTCAACCACCAGCATCTGTCTGCCCT  550

seq1  CCAAGACAGGCACTTCCCCTTGGCAACTGTTTTAGTTACACTATGATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGGCACTTCCCCTTGGCAACTGTTTTAGTTACACTATGATCAC  600

seq1  AGCAACTCTTATACAGGACAGCATCTAACTGGGGCTGGCTTACAGGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCTTATACAGGACAGCATCTAACTGGGGCTGGCTTACAGGTTCA  650

seq1  GAGGTTCAGTCTATCAACATCATGGTGGAAGCATGGCAGCATGCAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCAGTCTATCAACATCATGGTGGAAGCATGGCAGCATGCAGGAAG  700

seq1  ACATGGTTCTACATCTTGGTCTCCAGGCAGCAGGTGACTGTGTATCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTCTACATCTTGGTCTCCAGGCAGCAGGTGACTGTGTATCACAC  750

seq1  TGAGCATAGTATGAGCACATGAGACTTCAAAGCCTGTGCCCACAATGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATAGTATGAGCACATGAGACTTCAAAGCCTGTGCCCACAATGACA  800

seq1  CACTTCCTCCAAAAAGGCCACACCTCTTAATAGTGCTACTCCCCATGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTCCAAAAAGGCCACACCTCTTAATAGTGCTACTCCCCATGGGC  850

seq1  CAAGCCTTCAAACACATGAGTCTGTGAGGGCCAAACCTATTCAAACCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTTCAAACACATGAGTCTGTGAGGGCCAAACCTATTCAAACCAGC  900

seq1  ACAGCAGTGGATCATCCTCCAGCCTAAAGTGCAGCCTCCCCAAGTGACCC  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACAGCAGTGGATCATCCTCCAGCCTAAAGTGCAGCCTCCTCAAGTGACCC  950

seq1  TGTATAGGGCAGCCACAAGTCCTCATGTGCTACCCATGGTGAAATTACAA  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTATAGGGCAGCCAC-AGTCCTCATGTGCTACCCATGGTGAAATTACAA  999

seq1  ATATGCGAGGAAAATAAGTAGTGACTGTCGTCTGAAGCAACCACCTTGGG  1050
      |||||||||||||   |||||||||||||||||  |||||||  ||||||
seq2  ATATGCGAGGAAA--TAGTAGTGACTGTCGTCTTGAGCAACC-TCTTGGG  1046

seq1  GGCTGTGTGTGATGGATGACGAACACCTGCACCCCACTAGCAAACCA-CT  1099
      ||||||||||||| ||||||||||||||||||| ||||||| ||||| ||
seq2  GGCTGTGTGTGAT-GATGACGAACACCTGCACCTCACTAGCCAACCACCT  1095

seq1  TTTG-ACTGTGAGGAAGCCATTCAGAAGGATTTGTATCAGACTCTCTGTG  1148
      |||| ||||| |||||| |||||   | || ||||||| |||||||  ||
seq2  TTTGAACTGT-AGGAAG-CATTC---AAGAATTGTATC-GACTCTC--TG  1137

seq1  TAGTGCACAGCTCTCCCTCTGAGGTCCT  1176
       | ||||||||| |||  ||||||||||
seq2  GAATGCACAGCT-TCC--CTGAGGTCCT  1162

seq1: chr11_106520925_106522074
seq2: B6Ng01-099D14.g_68_1196 (reverse)

seq1  CACGTTATCTGTCTGCGTGGGCCACAAACCCGGTTTATAAACAAGGCAAA  50
      |||| |||||||| ||||||||||| ||||||| |||| |||||| | ||
seq2  CACGGTATCTGTC-GCGTGGGCCAC-AACCCGG-TTAT-AACAAGAC-AA  45

seq1  AAATGGCAAGAGGAAAAAGTGAAGTCAGCCTGTGCCATTGGAGCAAGTCA  100
      |||||   ||||  ||||| |||||||||   || |||| ||||||||||
seq2  AAATG--CAGAG--AAAAG-GAAGTCAGC---TGGCATT-GAGCAAGTCA  86

seq1  AACAATACCAAGCTCGTAGCTGGCTAAGTGGCTGTCTCATTGTCCAGATA  150
      ||||||    ||||||||||| ||||||||||||||||| ||||||||||
seq2  AACAAT---CAGCTCGTAGCT-GCTAAGTGGCTGTCTCA-TGTCCAGATA  131

seq1  TTTCCTCAGGCCATTAAACAAGC-GAGGAATGATTGCCAGGTTTGATTTC  199
      ||  ||||||||||  ||||||| ||||||||||||||||||||||||||
seq2  TT--CTCAGGCCAT--AACAAGCGGAGGAATGATTGCCAGGTTTGATTTC  177

seq1  AGGAAGGAAGCCCCTCCCATTTCCCTGCCG-AGCAATTCAGTGTTCATTT  248
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  AGGAAGGAAGCCCCTCCCATTTCCCTGCCGAAGCAATTCAGTGTTCA-TT  226

seq1  TCTTCTGACCCACGCTGGCTGGTTATTAGGGAAGCGCTGCATGCTTCTTT  298
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTCTGACCCACGCTGGCTGGTTATTAGAGAAGCGCTGCATGCTTCTTT  276

seq1  CATAAAC-AAAAGTTATTTGCTTCAAGATTCAAAATTCACTTCTCAACGA  347
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACAAAAAGTTATTTGCTTCAAGATTCAAAATTCACTTCTCAACGA  326

seq1  CTGGGAAGCCCTGAGTTCCTGCCAGATGGTTTTATTATTTTGGAGGTAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGCCCTGAGTTCCTGCCAGATGGTTTTATTATTTTGGAGGTAGG  376

seq1  GCTAGCCCAAGTACTGGGAGCACCCTGCGACCAGAGTAGACTTTGGGGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCCAAGTACTGGGAGCACCCTGCGACCAGAGTAGACTTTGGGGGC  426

seq1  TGAGGGAAAGCCATTCTGCCACTGGCCTGGAGTTCAGAGCCTTTGTCCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAAGCCATTCTGCCACTGGCCTGGAGTTCAGAGCCTTTGTCCAG  476

seq1  AGAGCCCCTTTGGGTGGAAGACAAAGTAACTAGGTTGGTTCGGCAAAGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCTTTGGGTGGAAGACAAAGTAACTAGGTTGGTTCGGCAAAGTT  526

seq1  CCGACGGCTGGCCCGCAGCCCTGCCTTGGGTGGCCACAGATACACACGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACGGCTGGCCCGCAGCCCTGCCTTGGGTGGCCACAGATACACACGGC  576

seq1  CATGGGAACAGCCAGTGAACTTTTTTTTTTTTTTTTCTTAATCAGGGTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAACAGCCAGTGAACTTTTTTTTTTTTTTTTCTTAATCAGGGTCC  626

seq1  TACTCTGCCTGTGGAGCAAGCTTGTCATTATTCTCACCTCTTGGGAGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGCCTGTGGAGCAAGCTTGTCATTATTCTCACCTCTTGGGAGACA  676

seq1  GTCACTTTTTTTTTTTTTCCTTTTGAGACAAGGTTTCTCTGTGTAACAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTTTTTTTTTTTCCTTTTGAGACAAGGTTTCTCTGTGTAACAGA  726

seq1  GCCCTGACTGTCCTGGAACTCAGGGCTAAAGGATTGTAGACCAGACTGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGACTGTCCTGGAACTCAGGGCTAAAGGATTGTAGACCAGACTGGC  776

seq1  CTTGAACTCACAGAGATCACTTACTGCAGCTAAGCACCACCAAGCCTGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCACAGAGATCACTTACTGCAGCTAAGCACCACCAAGCCTGGC  826

seq1  TTGTGTCACTTCTTAACAGTGAGGACAAAGCCCAGGCCAGGGCTTTTGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCACTTCTTAACAGTGAGGACAAAGCCCAGGCCAGGGCTTTTGGA  876

seq1  GACGTGACCTCTGTTTCTGCTTCTCAGGGATTCTGGATGCTTTAGCAAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGACCTCTGTTTCTGCTTCTCAGGGATTCTGGATGCTTTAGCAAGG  926

seq1  CAGGCCCCCCATTTCTTCGTCTATGAAACAGGCTCCCTTGCCCCTTCCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCCCATTTCTTCGTCTATGAAACAGGCTCCCTTGCCCCTTCCAC  976

seq1  ACAACAGTGCTCTCAGCAGCCTGGGTGGGTGCAGCTAGGGAAGCTGTTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTGCTCTCAGCAGCCTGGGTGGGTGCAGCTAGGGAAGCTGTTCA  1026

seq1  CCTCATTCCTCTTCGCCTTAAACAGACAGCCTTCATCCCCACAGAGAATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCCTCTTCGCCTTAAACAGACAGCCTTCATCCCCACAGAGAATG  1076

seq1  TCAGCGCCTTCCTGTCTGTCCAGAGCATAATGAGCTCTGTTTAGCAAGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCCTTCCTGTCTGTCCAGAGCATAATGAGCTCTGTTTAGCAAGAA  1126

seq1  TTC  1150
      |||
seq2  TTC  1129