BAC Information

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BAC

Clone NameB6Ng01-100G16
Chromosome11 (Build37)
Map Location 78,804,070 - 78,946,727
singlet/doubletdoublet
Overlap geneKsr1
Upstream genePhf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9
Downstream geneLOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100G16.bB6Ng01-100G16.g
ACCDH909922DH909923
length993599
definitionDH909922|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G16, 5' end.DH909923|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,804,070 - 78,804,616)(78,946,129 - 78,946,727)
sequence
gaattcccagaaggagataaagaattagaatttgaacatgagagagagaa
agagagagaataggtttcagaaaaggagttatcccctgtttgggaccttt
tagcaaaaaagagggaaaatgagaataagctatttcagagctctcctagg
gacagaaggaaatcgggagacgtcctgcttcctctctggctcctatggaa
atattcttagttctagttaggatatctgggtccctttgagacatcaggtt
ctattccctctctgtctattgtctgtccttggtgcaacaatttgtccata
tgtctgtctatttatgtttgtttttgttttgttgtttgaatgattattgt
tctgtgtttcatgttgaagaaaaaaatggttaaaactttatctgctggct
gtccatcctttgatttagtttaacttgtttaaaaggaagtctcaatttgc
acagcagaaaatgataagttacactgcactgtggctgggagtcaagtaca
gctggaaaagcccagttagaggctgattatctacacaagcagctcttaaa
ggggccagcagccttttgcttgtaacagaaagttaacttaaaattggtaa
ctcagggttggagtcattctaaacaacatgtggcatgagcgaacccagga
aaacaggtctttaaagatacttcaaaaatagggataatatttgggccagg
actctggcagagtgctcagattgagaaatgtttgcatttgggttgattcg
gagctcagagcagcctcaacgcggcttgagtggcatttcttttgtttgga
aaaccctgactagggaagttcttgggacctcacctctccctgccttcagg
gaaaattccttttagctaaaaaagcattgttgcagatctagccagatgtt
gttctagtaaagtttaaattcaaagtttataaaagtcaatcagctgtgga
atttatcagacattgcgatttgacttgcctactcatataagtt
gaattctgctgtttaaacagtgtgactagaaccattcttatacaagcacc
tcttttgctcctgttctgaattcaattcatatccttcacataatcccatg
aatggaattcttaggttaaaatgagtcaggagtgcctacctgtctgcctc
tggctgtctctgccatgtgctccccactactccctttacatgaaagtttc
ccaccatccaagatggtcttaaactgttaatccttttgcctccatctcct
aagttctgggagttcagggtgtgtacctactcccagtttccccatgtatt
tatctgtgcatttcttcctaacctctctattaaaatttttttggccttgt
taaatcatttttcatttgctctttatttctctgtacattcattcgatgtt
gatttagcaactgctctgtgctgaacactgccttagatgctggagaaagg
caggcagggcggcagagggctccggtagtggaaggaggcaaatgagaagc
caaggacagaggtttgcgccaaggagaatggaagtgcggagagaggaggc
agggttgggccttagtttggggttggagttgtgtgtggagagggggtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78804070_78804616
seq2: B6Ng01-100G16.b_41_587

seq1  GAATTCCCAGAAGGAGATAAAGAATTAGAATTTGAACATGAGAGAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGAAGGAGATAAAGAATTAGAATTTGAACATGAGAGAGAGAA  50

seq1  AGAGAGAGAATAGGTTTCAGAAAAGGAGTTATCCCCTGTTTGGGACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAATAGGTTTCAGAAAAGGAGTTATCCCCTGTTTGGGACCTTT  100

seq1  TAGCAAAAAAGAGGGAAAATGAGAATAAGCTATTTCAGAGCTCTCCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAAAGAGGGAAAATGAGAATAAGCTATTTCAGAGCTCTCCTAGG  150

seq1  GACAGAAGGAAATCGGGAGACGTCCTGCTTCCTCTCTGGCTCCTATGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGGAAATCGGGAGACGTCCTGCTTCCTCTCTGGCTCCTATGGAA  200

seq1  ATATTCTTAGTTCTAGTTAGGATATCTGGGTCCCTTTGAGACATCAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTAGTTCTAGTTAGGATATCTGGGTCCCTTTGAGACATCAGGTT  250

seq1  CTATTCCCTCTCTGTCTATTGTCTGTCCTTGGTGCAACAATTTGTCCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCCTCTCTGTCTATTGTCTGTCCTTGGTGCAACAATTTGTCCATA  300

seq1  TGTCTGTCTATTTATGTTTGTTTTTGTTTTGTTGTTTGAATGATTATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTATTTATGTTTGTTTTTGTTTTGTTGTTTGAATGATTATTGT  350

seq1  TCTGTGTTTCATGTTGAAGAAAAAAATGGTTAAAACTTTATCTGCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTCATGTTGAAGAAAAAAATGGTTAAAACTTTATCTGCTGGCT  400

seq1  GTCCATCCTTTGATTTAGTTTAACTTGTTTAAAAGGAAGTCTCAATTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCCTTTGATTTAGTTTAACTTGTTTAAAAGGAAGTCTCAATTTGC  450

seq1  ACAGCAGAAAATGATAAGTTACACTGCACTGTGGCTGGGAGTCAAGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGAAAATGATAAGTTACACTGCACTGTGGCTGGGAGTCAAGTACA  500

seq1  GCTGGAAAAGCCCAGTTAGAGGCTGATTATCTACACAAGCAGCTCTT  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAAAGCCCAGTTAGAGGCTGATTATCTACACAAGCAGCTCTT  547

seq1: chr11_78946129_78946727
seq2: B6Ng01-100G16.g_69_667 (reverse)

seq1  ATACCCCCTCTCCACACACAACTCCAACCCCAAACTAAGGCCCAACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCCTCTCCACACACAACTCCAACCCCAAACTAAGGCCCAACCCTG  50

seq1  CCTCCTCTCTCCGCACTTCCATTCTCCTTGGCGCAAACCTCTGTCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTCTCCGCACTTCCATTCTCCTTGGCGCAAACCTCTGTCCTTGG  100

seq1  CTTCTCATTTGCCTCCTTCCACTACCGGAGCCCTCTGCCGCCCTGCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATTTGCCTCCTTCCACTACCGGAGCCCTCTGCCGCCCTGCCTGC  150

seq1  CTTTCTCCAGCATCTAAGGCAGTGTTCAGCACAGAGCAGTTGCTAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCAGCATCTAAGGCAGTGTTCAGCACAGAGCAGTTGCTAAATCA  200

seq1  ACATCGAATGAATGTACAGAGAAATAAAGAGCAAATGAAAAATGATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGAATGAATGTACAGAGAAATAAAGAGCAAATGAAAAATGATTTAA  250

seq1  CAAGGCCAAAAAAATTTTAATAGAGAGGTTAGGAAGAAATGCACAGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAAAAAAATTTTAATAGAGAGGTTAGGAAGAAATGCACAGATAA  300

seq1  ATACATGGGGAAACTGGGAGTAGGTACACACCCTGAACTCCCAGAACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGGGGAAACTGGGAGTAGGTACACACCCTGAACTCCCAGAACTTA  350

seq1  GGAGATGGAGGCAAAAGGATTAACAGTTTAAGACCATCTTGGATGGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGAGGCAAAAGGATTAACAGTTTAAGACCATCTTGGATGGTGGG  400

seq1  AAACTTTCATGTAAAGGGAGTAGTGGGGAGCACATGGCAGAGACAGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCATGTAAAGGGAGTAGTGGGGAGCACATGGCAGAGACAGCCAG  450

seq1  AGGCAGACAGGTAGGCACTCCTGACTCATTTTAACCTAAGAATTCCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACAGGTAGGCACTCCTGACTCATTTTAACCTAAGAATTCCATTC  500

seq1  ATGGGATTATGTGAAGGATATGAATTGAATTCAGAACAGGAGCAAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTATGTGAAGGATATGAATTGAATTCAGAACAGGAGCAAAAGAG  550

seq1  GTGCTTGTATAAGAATGGTTCTAGTCACACTGTTTAAACAGCAGAATTC  599
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTATAAGAATGGTTCTAGTCACACTGTTTAAACAGCAGAATTC  599