BAC Information

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BAC

Clone NameB6Ng01-101E24
Chromosome11 (Build37)5 (Build37)
Map Location 19,815,924 - 19,817,047112,495,454 - 112,495,519
singlet/doubletsingletsinglet
Overlap geneLOC665868
Upstream geneMeis1, LOC635455, LOC100042708, Glns-ps1
Downstream geneLOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101E24.bB6Ng01-101E24.g
ACCDH910535DH910536
length1,12064
definitionDH910535|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E24, 5' end.DH910536|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,815,924 - 19,817,047)(112,495,454 - 112,495,519)
sequence
gaattcactgttgccaagttcttcctttttttcccaagaagagacaaaag
tcatgagttttatataaaatatccaattttagacctggccatggtggctc
atgcctattagtcaggtggacctctgagtttgaggccagcctgatctaca
ggctaagttccagaatagccaagactacacagagaaactctgtttcaaac
aaacagctttatttagaaaaaaaataaaagcaatcaaaatcttctcttag
ggtcttctctggcccatgagccaggtgttattagttaaaaataaataaca
aaagataaataaatagctaggcctgatgacccatacctttaatcctggca
gaggtaggcagatctctgtgagttggaggaagtctgtcagtctggtctat
atagtgagtttcaggtgagccaaagatatgtagtcagatcttttctcata
aataaacaaataaataaatagaaaataaatattaaaagaaaaataaaatt
gtgaacgtagaatattttttacaaataaatggtgagaaaccaaaatagca
ttaataataaataatattccatgtcttactttctttttttttttttggtt
tttcgagacagggtttctctgtatagccctggctgtcctggaactcactt
tgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctccc
gagtgctgggattaaaggtgtgcgccaccaccgcccggcttactttcttt
ttttaaagacttatttattattatatctaagtacactgtagctgtcttca
gatgcaccagaagagggcgtcagatctcattacagatggttgtgagccac
catgtagttgctggatttgaactcaggaccttttggaagagcagttcgtg
cttttaaccacttgagccattctctccagaccatgtcttactttcttttg
cccttcatgattcaaagaatgattttctgctttcacggacttctttggcg
attagtgacaaaggttcacttcaatccagcgcaagccaaggacgatgcat
tgtgtgacattcttgaaagtcagctctctaggcacaagacaggacttgag
tcagagtccttatcgtaccc
aaggctaatctgggctacatgtgaccctgtctcctacaagaagaagaagg
aggaggaggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_19815924_19817047
seq2: B6Ng01-101E24.b_50_1169

seq1  GAATTCACTGTTGCCAAGTTCTTCCTTTTTTTCCCAAGAAGAGACAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTGCCAAGTTCTTCCTTTTTTTCCCAAGAAGAGACAAAAG  50

seq1  TCATGAGTTTTATATAAAATATCCAATTTTAGACCTGGCCATGGTGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTTTTATATAAAATATCCAATTTTAGACCTGGCCATGGTGGCTC  100

seq1  ATGCCTATTAGTCAGGTGGACCTCTGAGTTTGAGGCCAGCCTGATCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTATTAGTCAGGTGGACCTCTGAGTTTGAGGCCAGCCTGATCTACA  150

seq1  GGCTAAGTTCCAGAATAGCCAAGACTACACAGAGAAACTCTGTTTCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGTTCCAGAATAGCCAAGACTACACAGAGAAACTCTGTTTCAAAC  200

seq1  AAACAGCTTTATTTAGAAAAAAAATAAAAGCAATCAAAATCTTCTCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTTTATTTAGAAAAAAAATAAAAGCAATCAAAATCTTCTCTTAG  250

seq1  GGTCTTCTCTGGCCCATGAGCCAGGTGTTATTAGTTAAAAATAAATAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTCTGGCCCATGAGCCAGGTGTTATTAGTTAAAAATAAATAACA  300

seq1  AAAGATAAATAAATAGCTAGGCCTGATGACCCATACCTTTAATCCTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAATAAATAGCTAGGCCTGATGACCCATACCTTTAATCCTGGCA  350

seq1  GAGGTAGGCAGATCTCTGTGAGTTGGAGGAAGTCTGTCAGTCTGGTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGCAGATCTCTGTGAGTTGGAGGAAGTCTGTCAGTCTGGTCTAT  400

seq1  ATAGTGAGTTTCAGGTGAGCCAAAGATATGTAGTCAGATCTTTTCTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGTTTCAGGTGAGCCAAAGATATGTAGTCAGATCTTTTCTCATA  450

seq1  AATAAACAAATAAATAAATAGAAAATAAATATTAAAAGAAAAATAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAATAAATAAATAGAAAATAAATATTAAAAGAAAAATAAAATT  500

seq1  GTGAACGTAGAATATTTTTTACAAATAAATGGTGAGAAACCAAAATAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACGTAGAATATTTTTTACAAATAAATGGTGAGAAACCAAAATAGCA  550

seq1  TTAATAATAAATAATATTCCATGTCTTACTTTCTTTTTTTTTTTTTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATAAATAATATTCCATGTCTTACTTTCTTTTTTTTTTTTTGGTT  600

seq1  TTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  650

seq1  TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCC  700

seq1  GAGTGCTGGGATTAAAGGTGTGCGCCACCACCGCCCGGCTTACTTTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGATTAAAGGTGTGCGCCACCACCGCCCGGCTTACTTTCTTT  750

seq1  TTTTAAAGACTTATTTATTATTATATCTAAGTACACTGTAGCTGTCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGACTTATTTATTATTATATCTAAGTACACTGTAGCTGTCTTCA  800

seq1  GATGCACCAGAAGAGGGCGTCAGATCTCATTACAGATGGTTGTGAGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACCAGAAGAGGGCGTCAGATCTCATTACAGATGGTTGTGAGCCAC  850

seq1  CATGTAGTTGCTGGGATTTGAACTCAGGACC-TTCGGAAGAGCAGTCGGT  899
      |||||||||||| |||||||||||||||||| || |||||||||||  ||
seq2  CATGTAGTTGCT-GGATTTGAACTCAGGACCTTTTGGAAGAGCAGTTCGT  899

seq1  GCTTTTAACCAC-TGAGCCA-TCTCTCCAGACCCATGTCTTACTTTCTTT  947
      |||||||||||| ||||||| |||||||||| ||||||||||||||||||
seq2  GCTTTTAACCACTTGAGCCATTCTCTCCAGA-CCATGTCTTACTTTCTTT  948

seq1  TGCCCTTCATGATTCAAAGAATGATTTTCTGCTTTCACGGACTTCTTTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCATGATTCAAAGAATGATTTTCTGCTTTCACGGACTTCTTTGG  998

seq1  CGATTAGTGACAAAGGTTCAACTCAACCCAGCGCAAGCCAAAGGAACGAT  1047
      ||||||||||||||||||||  |||| ||||||||||||||  | |||||
seq2  CGATTAGTGACAAAGGTTCACTTCAATCCAGCGCAAGCCAA--GGACGAT  1046

seq1  GCATTGGTGTTGACA-TCCTGAAAGTCAGGCTCCCCCAGGCACAGGGCAG  1096
      ||||| ||| ||||| || ||||||||| ||| | | ||||||| | |||
seq2  GCATT-GTG-TGACATTCTTGAAAGTCA-GCT-CTCTAGGCACAAGACAG  1092

seq1  GAC-TGAGTTCATGTGCTTTATCGTACCC  1124
      ||| |||| |||    | |||||||||||
seq2  GACTTGAG-TCAGAGTCCTTATCGTACCC  1120

seq1: chr5_112495454_112495519
seq2: B6Ng01-101E24.g_85_139 (reverse)

seq1  CTCCTCCTCCTCCTCCTTCTTCTTCTTCACCTGTTTTTTGAAACAGGGTC  50
      |||||||||||||||||||||||||        || |  || ||||||||
seq2  CTCCTCCTCCTCCTCCTTCTTCTTC--------TTGTAGGAGACAGGGTC  42

seq1  TCACACTGTAGCCCAG  66
       ||   ||||||||||
seq2  ACA---TGTAGCCCAG  55