BAC Information

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BAC

Clone NameB6Ng01-101I15
Chromosome11 (Build37)
Map Location 96,213,874 - 96,352,048
singlet/doubletdoublet
Overlap geneHoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1
Upstream gene5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3
Downstream geneSnx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101I15.bB6Ng01-101I15.g
ACCDH910693DH910694
length1,1551,026
definitionDH910693|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I15, 5' end.DH910694|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,350,876 - 96,352,048)(96,213,874 - 96,214,901)
sequence
gaattcaccgtgtctaagaagtttctaccagttttggaagtagaagctaa
gaacgattgtctatgcagattagatccagccctaagcctggagatgctct
ctaagagggctttgatcaagccttctgaatcagtacagcatccaccgggg
gaagcaaaggacagatgatcactcgattgtgtccagacactcccactcag
ttgccacctttataaacagtcaggtggaaaatggattgtaaaggaaatgt
ggatttcttcttcccttaaggaagtgtgtgttcccagcagctattagctg
ctcagattctaaaatgtgcaaatgaggtctaagctccttatttaaaaaaa
ctgagcacaatgttcctacccagtctggggctaatacatactggtactgt
caaggagtcgactagccaggcctgattttaacttttctattgaagaaggg
actatgaaagcaaagtcagcgccaacaccatgaaagtgtcccttctcccc
acgggctacctgaacaagcataaatgcctcagtttcaccattatggttct
gcctctgttaatcacaaacgtgttcaataaaggttaaaatccaaaaccaa
tattggcctggttattttaagataattactaaaacgtgttcatgtcggta
catcccagtatccttacctacctccaaatcaatccataaatttctgccaa
gtatgaaaactcatggcaggttcttactgctcttgtgaacgtatactctg
gtaaaggagatttttttttttaactaaaaaagcacaatgaagctggctga
tacaaacctgggatttgatttgctggaaaccccgaagaatgtgggctctc
tgatcctgtgccccagggctgaggttctcattctgcaagccttctgccag
gaagtcttcgtatctaaaggaaaagaaagtgatcaacagaggaggaaagg
aatctgaaagataggaaatgatgttgtttctctggtaaatgtctgtggct
gaacagtgaacagtaatgaactagaagatcaatatacttaattaccatct
tagtgttgctcgccagatagagataccagattttatgcgtctctaaaaat
gacaattctaacatcgaggcctttctggtgaattgagcctggggcatacg
ttatc
gaattcaaaagctaggaaggaaaggggtgaagaacaatctatgatccctc
tctccccaggttgagttggaaagttctgaattgaggggtccattgggagg
acttgggggagggagactctgaggtcctgggagctaagagaaattgctcc
ccgccccctacgtggcccgtgggcggctctgaaggcaccgacttgacccg
ggccgggtctgcctacgtggaagagcactaaaaaaaaccccaaagacaca
gaaagaagcgctgtgggggtggggtgggagcccgagtaggactgctgaga
gtcttttaagccaaaggggtgctcccgatctcagctaaacggaggctgcg
ttgagacctctctgataacataggggtgcttccctcgcagatggccccgg
attgccagaatgcggcggcagcggctcccgcagactgcgcacggcctaca
ccaacacgcaactgctggagctggagaaggagttccacttcaataagtac
ctgtgccggccgcgtcgcgtcgagatcgctgccttgctggacctcaccga
aaggcaggtcaaagtctggttccagaaccgacgcatgaaacacaagcggc
agacgcagcatcgagagccgcccgagggagaaccaggcgggccgagcgcc
caggacgacgcgggagagccagccgaggaacccacggtcagcccgggcga
cgtcgcgactcaccggctgcgggaagcctgctttccaccccgccgaggcc
gcgcagggaccccggggcgcaccgccgtcagcgctgcctgccaccaccct
ggagagtgtgggcgcatcgagccccggctgcacaatgcttcagagccgga
ggccggcagagcgagcctcttacctcgagacgcctgccccgagcggcagg
atttcccttttttctaccggatcctcatttcttcgctgcagactctgtct
ccagatgtctgaagcctttcaccagcctgcagggttctctcgatagcccg
tgcccttttcgagaagactggacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96350876_96352048
seq2: B6Ng01-101I15.b_42_1196 (reverse)

seq1  GATAACGTATGCACCAGCTTTCTAAAATTCA-CAGCAAGGCCTCGGATTG  49
      |||||||||||| ||||  |     |||||| ||| |||||||||   ||
seq2  GATAACGTATGCCCCAGGCT----CAATTCACCAGAAAGGCCTCG--ATG  44

seq1  TTAGGACTTGTCATTTATAGAGACGCATAAAATCTTGGTTATTCTCTATT  99
      ||| || ||||||||| ||||||||||||||||| ||||   |||||| |
seq2  TTA-GAATTGTCATTTTTAGAGACGCATAAAATC-TGGT--ATCTCTA-T  89

seq1  CTGGCGAGCTACACCTAATAGATGGTTATTAAGTATATGATTCTCTTAGT  149
      ||||||||| ||| |||  ||||||| |||||||||||   |||  ||||
seq2  CTGGCGAGCAACA-CTA--AGATGGTAATTAAGTATATTGATCTTCTAGT  136

seq1  TCATTACTGTTCACTTGTTCAGCCACAGACATTTACCAGAGAAACAACAT  199
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  TCATTACTGTTCAC-TGTTCAGCCACAGACATTTACCAGAGAAACAACA-  184

seq1  TCATTTCCTAATCTTTCAGATTTCCTTTCCTCCTCTGTTGATCACCTTTT  249
      ||||||||| |||||||||| ||||||||||||||||||||||||  |||
seq2  TCATTTCCT-ATCTTTCAGA-TTCCTTTCCTCCTCTGTTGATCAC--TTT  230

seq1  CTTTTCCTTTAGATACCGAAGACTTCCTGGCAGAAGGCTTGCAGAATGAG  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTTAGATA-CGAAGACTTCCTGGCAGAAGGCTTGCAGAATGAG  279

seq1  AACCTCAGCCCTGGGGCACAGGATCAGAGAGCCCACATTCTTCGGGGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAGCCCTGGGGCACAGGATCAGAGAGCCCACATTCTTCGGGGTTT  329

seq1  CCAGCAAATCAAAT-CCAGGTTTGTATCAGCCAGCTTCATTGTGCTTTTT  398
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCAGCAAATCAAATCCCAGGTTTGTATCAGCCAGCTTCATTGTGCTTTTT  379

seq1  TAGTT-AAAAAAAAAATCTCCTTTACCAGAGTATACGTTCACAAGAGCAG  447
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAAAAAAAAAATCTCCTTTACCAGAGTATACGTTCACAAGAGCAG  429

seq1  TAAGAACCTGCCATGAGTTTTCATACTTGGCAGAAATTTATGGATTGATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACCTGCCATGAGTTTTCATACTTGGCAGAAATTTATGGATTGATT  479

seq1  TGGAGGTAGGTAAGGATACTGGGATGTACCGACATGAACACGTTTTAGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTAGGTAAGGATACTGGGATGTACCGACATGAACACGTTTTAGTA  529

seq1  ATTATCTTAAAATAACCAGGCCAATATTGGTTTTGGATTTTAACCTTTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTAAAATAACCAGGCCAATATTGGTTTTGGATTTTAACCTTTAT  579

seq1  TGAACACGTTTGTGATTAACAGAGGCAGAACCATAATGGTGAAACTGAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACGTTTGTGATTAACAGAGGCAGAACCATAATGGTGAAACTGAGG  629

seq1  CATTTATGCTTGTTCAGGTAGCCCGTGGGGAGAAGGGACACTTTCATGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGCTTGTTCAGGTAGCCCGTGGGGAGAAGGGACACTTTCATGGT  679

seq1  GTTGGCGCTGACTTTGCTTTCATAGTCCCTTCTTCAATAGAAAAGTTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCGCTGACTTTGCTTTCATAGTCCCTTCTTCAATAGAAAAGTTAAA  729

seq1  ATCAGGCCTGGCTAGTCGACTCCTTGACAGTACCAGTATGTATTAGCCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCCTGGCTAGTCGACTCCTTGACAGTACCAGTATGTATTAGCCCC  779

seq1  AGACTGGGTAGGAACATTGTGCTCAGTTTTTTTAAATAAGGAGCTTAGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGTAGGAACATTGTGCTCAGTTTTTTTAAATAAGGAGCTTAGAC  829

seq1  CTCATTTGCACATTTTAGAATCTGAGCAGCTAATAGCTGCTGGGAACACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGCACATTTTAGAATCTGAGCAGCTAATAGCTGCTGGGAACACA  879

seq1  CACTTCCTTAAGGGAAGAAGAAATCCACATTTCCTTTACAATCCATTTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTTAAGGGAAGAAGAAATCCACATTTCCTTTACAATCCATTTTC  929

seq1  CACCTGACTGTTTATAAAGGTGGCAACTGAGTGGGAGTGTCTGGACACAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGACTGTTTATAAAGGTGGCAACTGAGTGGGAGTGTCTGGACACAA  979

seq1  TCGAGTGATCATCTGTCCTTTGCTTCCCCCGGTGGATGCTGTACTGATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTGATCATCTGTCCTTTGCTTCCCCCGGTGGATGCTGTACTGATTC  1029

seq1  AGAAGGCTTGATCAAAGCCCTCTTAGAGAGCATCTCCAGGCTTAGGGCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTTGATCAAAGCCCTCTTAGAGAGCATCTCCAGGCTTAGGGCTG  1079

seq1  GATCTAATCTGCATAGACAATCGTTCTTAGCTTCTACTTCCAAAACTGGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAATCTGCATAGACAATCGTTCTTAGCTTCTACTTCCAAAACTGGT  1129

seq1  AGAAACTTCTTAGACACGGTGAATTC  1173
      ||||||||||||||||||||||||||
seq2  AGAAACTTCTTAGACACGGTGAATTC  1155

seq1: chr11_96213874_96214901
seq2: B6Ng01-101I15.g_68_1093

seq1  GAATTCAAAAGCTAGGAAGGAAAGGGGTGAAGAACAATCTATGATCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGCTAGGAAGGAAAGGGGTGAAGAACAATCTATGATCCCTC  50

seq1  TCTCCCCAGGTTGAGTTGGAAAGTTCTGAATTGAGGGGTCCATTGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGGTTGAGTTGGAAAGTTCTGAATTGAGGGGTCCATTGGGAGG  100

seq1  ACTTGGGGGAGGGAGACTCTGAGGTCCTGGGAGCTAAGAGAAATTGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGGGAGGGAGACTCTGAGGTCCTGGGAGCTAAGAGAAATTGCTCC  150

seq1  CCGCCCCCTACGTGGCCCGTGGGCGGCTCTGAAGGCACCGACTTGACCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCCTACGTGGCCCGTGGGCGGCTCTGAAGGCACCGACTTGACCCG  200

seq1  GGCCGGGTCTGCCTACGTGGAAGAGCACTAAAAAAAACCCCAAAGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGGTCTGCCTACGTGGAAGAGCACTAAAAAAAACCCCAAAGACACA  250

seq1  GAAAGAAGCGCTGTGGGGGTGGGGTGGGAGCCCGAGTAGGACTGCTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGCGCTGTGGGGGTGGGGTGGGAGCCCGAGTAGGACTGCTGAGA  300

seq1  GTCTTTTAAGCCAAAGGGGTGCTCCCGATCTCAGCTAAACGGAGGCTGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTAAGCCAAAGGGGTGCTCCCGATCTCAGCTAAACGGAGGCTGCG  350

seq1  TTGAGACCTCTCTGATAACATAGGGGTGCTTCCCTCGCAGATGGCCCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCTCTCTGATAACATAGGGGTGCTTCCCTCGCAGATGGCCCCGG  400

seq1  ATTGCCAGAATGCGGCGGCAGCGGCTCCCGCAGACTGCGCACGGCCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGAATGCGGCGGCAGCGGCTCCCGCAGACTGCGCACGGCCTACA  450

seq1  CCAACACGCAACTGCTGGAGCTGGAGAAGGAGTTCCACTTCAATAAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACGCAACTGCTGGAGCTGGAGAAGGAGTTCCACTTCAATAAGTAC  500

seq1  CTGTGCCGGCCGCGTCGCGTCGAGATCGCTGCCTTGCTGGACCTCACCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCGGCCGCGTCGCGTCGAGATCGCTGCCTTGCTGGACCTCACCGA  550

seq1  AAGGCAGGTCAAAGTCTGGTTCCAGAACCGACGCATGAAACACAAGCGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGTCAAAGTCTGGTTCCAGAACCGACGCATGAAACACAAGCGGC  600

seq1  AGACGCAGCATCGAGAGCCGCCCGAGGGAGAACCAGGCGGGCCGAGCGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCAGCATCGAGAGCCGCCCGAGGGAGAACCAGGCGGGCCGAGCGCC  650

seq1  CAGGACGACGCGGGAGAGCCAGCCGAGGAACCCACGGTCAGCCCGGGCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACGACGCGGGAGAGCCAGCCGAGGAACCCACGGTCAGCCCGGGCGA  700

seq1  CGTCGCGACTCACCGGCTGCGGGAAGCCTGC-TTCCACCCCGCCGAGGCC  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGTCGCGACTCACCGGCTGCGGGAAGCCTGCTTTCCACCCCGCCGAGGCC  750

seq1  GCGCAGGGACCCCGGGGCGCACCGCCGTCAGCGCTGCCTGCCACCACCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGGACCCCGGGGCGCACCGCCGTCAGCGCTGCCTGCCACCACCCT  800

seq1  GGAGAGTGTGGGCGCATCGAGCCCCGGCTGCACAATGC-TCAGAGCCGGA  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGAGAGTGTGGGCGCATCGAGCCCCGGCTGCACAATGCTTCAGAGCCGGA  850

seq1  GGCCGGCAGAGCGAGCC-CCTACCCGAAGACGCCTGCCCCGAGCGGCAGG  897
      ||||||||||||||||| | ||||   |||||||||||||||||||||||
seq2  GGCCGGCAGAGCGAGCCTCTTACCTCGAGACGCCTGCCCCGAGCGGCAGG  900

seq1  ATTCGCC--TTTTCTACCGGA-CCTCAATTTCTTCGCTGCAGACTCCTGT  944
      |||  ||  |||||||||||| |||| |||||||||||||||||| ||||
seq2  ATTTCCCTTTTTTCTACCGGATCCTC-ATTTCTTCGCTGCAGACT-CTGT  948

seq1  CTCCAGATGTCCGGAGGCCTTTCACCCAGCCTGCAGGGTTCTCTCGATAG  994
      |||||||||| | || |||||||| |||||||||||||||||||||||||
seq2  CTCCAGATGT-CTGAAGCCTTTCA-CCAGCCTGCAGGGTTCTCTCGATAG  996

seq1  CCCCGTGCCCTTTTCCGAGGAAGAGCTGGACTTC  1028
       ||||||||||||| ||| ||||| |||||||||
seq2  -CCCGTGCCCTTTT-CGA-GAAGA-CTGGACTTC  1026