BAC Information

Click to search

BAC

Clone NameB6Ng01-101K09
Chromosome11 (Build37)
Map Location 49,954,098 - 50,060,815
singlet/doubletdoublet
Overlap geneTbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s
Upstream geneOlfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696
Downstream geneMaml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101K09.bB6Ng01-101K09.g
ACCDH910767DH910768
length968349
definitionDH910767|Mus musculus domesticus DNA, BAC clone: B6Ng01-101K09, 5' end.DH910768|Mus musculus domesticus DNA, BAC clone: B6Ng01-101K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,954,098 - 49,955,067)(50,060,471 - 50,060,815)
sequence
gaattccatggattcaaccaactgtgtgtcgaaaatatttggggaaaagg
attgtagatttactgaacactgtcagtctttcctaggcaatacagaagag
cagagcatccctgctgtggtgcgtgttgtaagatgagctgaaacatgcag
gaggggggacaggcaaactatcaacatacatagatttatatatctctggg
gggtcctagaaccagtgccctgaagactccaagaaatggctgttttgtct
atcctgtcacatctttaaacaacttggtgtaggttttgttcccatttcac
aggatgaaaactgaagtcttctctcatttctgatagataaaagggccatg
gacacgattgtcccttgctctagttgggatcttgaatatcccccaaaggc
ccatggttggttctcagtctgtggtcttattggaagatgctggacccttt
agggggtgggaactcatggagggcaatgaggtggatggagaggtgccctc
gaatggggatattgggaccctggtcccttctacattctttgcattttggc
cacaaggtggacaggcctcttaggccacacactttccaccatggtatgct
gtgccatcacaggtgcaaagcaacgagattctgcagccatggactgaaaa
ctttggatccatcagaccaaataaaaataagcctgctttcctttttcact
gagttgtcaggctaacagaaagctgacccacatacctacagagcccttgc
cttagctggcctctggggtctgaaggttagtctagagtgtgtagttcttc
tgaaatgccttatacatatacagatatgtaattatgtttgccagagccca
acagggaaagacatttagaaatctctttttttctggtggtttgtttgttt
gtttgaaacaaggcctctctagtgtagccctgttggtgttaaagtcccta
ttagaccatgtagaccag
aatctgaagaccaggctggtctcaaactcagagagatccacctgcctctg
cctcctgagtgttgggatttaaaatgtgcgccaccaccagctgtgatttt
cagcattttgtgtgtctgtgtctgtacactatttgagtgcttgttgccta
aggaggtggtgagcctccaggctgattcagggaattgagttcaggccttt
cacaagaacaagtgcccttaaccactgagccaactctctagcccctcccc
tccccttccctttctttctttctttctttctttctatctttctttctttc
attctttctttctttctcgctctctcgctcgctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_49954098_49955067
seq2: B6Ng01-101K09.b_48_1015

seq1  GAATTCCATGGATTCAACCAACTGTGTGTCGAAAATATTTGGGGAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGATTCAACCAACTGTGTGTCGAAAATATTTGGGGAAAAGG  50

seq1  ATTGTAGATTTACTGAACACTGTCAGTCTTTCCTAGGCAATACAGAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGATTTACTGAACACTGTCAGTCTTTCCTAGGCAATACAGAAGAG  100

seq1  CAGAGCATCCCTGCTGTGGTGCGTGTTGTAAGATGAGCTGAAACATGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATCCCTGCTGTGGTGCGTGTTGTAAGATGAGCTGAAACATGCAG  150

seq1  GAGGGGGGACAGGCAAACTATCAACATACATAGATTTATATATCTCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGGACAGGCAAACTATCAACATACATAGATTTATATATCTCTGGG  200

seq1  GGGTCCTAGAACCAGTGCCCTGAAGACTCCAAGAAATGGCTGTTTTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTAGAACCAGTGCCCTGAAGACTCCAAGAAATGGCTGTTTTGTCT  250

seq1  ATCCTGTCACATCTTTAAACAACTTGGTGTAGGTTTTGTTCCCATTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCACATCTTTAAACAACTTGGTGTAGGTTTTGTTCCCATTTCAC  300

seq1  AGGATGAAAACTGAAGTCTTCTCTCATTTCTGATAGATAAAAGGGCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAAACTGAAGTCTTCTCTCATTTCTGATAGATAAAAGGGCCATG  350

seq1  GACACGATTGTCCCTTGCTCTAGTTGGGATCTTGAATATCCCCCAAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGATTGTCCCTTGCTCTAGTTGGGATCTTGAATATCCCCCAAAGGC  400

seq1  CCATGGTTGGTTCTCAGTCTGTGGTCTTATTGGAAGATGCTGGACCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTGGTTCTCAGTCTGTGGTCTTATTGGAAGATGCTGGACCCTTT  450

seq1  AGGGGGTGGGAACTCATGGAGGGCAATGAGGTGGATGGAGAGGTGCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGGGAACTCATGGAGGGCAATGAGGTGGATGGAGAGGTGCCCTC  500

seq1  GAATGGGGATATTGGGACCCTGGTCCCTTCTACATTCTTTGCATTTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGGATATTGGGACCCTGGTCCCTTCTACATTCTTTGCATTTTGGC  550

seq1  CACAAGGTGGACAGGCCTCTTAGGCCACACACTTTCCACCATGGTATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGTGGACAGGCCTCTTAGGCCACACACTTTCCACCATGGTATGCT  600

seq1  GTGCCATCACAGGTGCAAAGCAACGAGATTCTGCAGCCATGGACTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATCACAGGTGCAAAGCAACGAGATTCTGCAGCCATGGACTGAAAA  650

seq1  CTTTGGATCCATCAGACCAAATAAAAATAAGCCTGCTTTCCTTTTTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATCCATCAGACCAAATAAAAATAAGCCTGCTTTCCTTTTTCACT  700

seq1  GAGTTGTCAGGCTAACAGAAAGCTGACCCACATACCTACAGAGCCCTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTCAGGCTAACAGAAAGCTGACCCACATACCTACAGAGCCCTTGC  750

seq1  CTTAGCTGGCCTCTGGGGTCTGAAGGTTAGTCTAGAGTGTGTAGTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGGCCTCTGGGGTCTGAAGGTTAGTCTAGAGTGTGTAGTTCTTC  800

seq1  TGAAATGCCTTATACATATACAGATATGTAATTATGTTTGCCAGAGCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCCTTATACATATACAGATATGTAATTATGTTTGCCAGAGCCCA  850

seq1  ACAGGGAAAGACATTTAGAAATCTCTTTTTTTCTTGGTGGTTTGTTTGTT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAGGGAAAGACATTTAGAAATCTCTTTTTTTC-TGGTGGTTTGTTTGTT  899

seq1  TGTTTGAAACAAGGCCTCTCT-GTGTAGTCCTGGTTGGTGTGAAAGTCCC  949
      ||||||||||||||||||||| |||||| ||| |||||||| ||||||||
seq2  TGTTTGAAACAAGGCCTCTCTAGTGTAGCCCT-GTTGGTGTTAAAGTCCC  948

seq1  TATTTAGACCATGTAGACCAG  970
      || ||||||||||||||||||
seq2  TA-TTAGACCATGTAGACCAG  968

seq1: chr11_50060471_50060815
seq2: B6Ng01-101K09.g_77_425 (reverse)

seq1  ----AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAG  46
          |||||||||||||| ||| ||||||| ||||||||||||||||| |
seq2  AGAGAGAGAGAGAGAGAGCGAGCGAGAGAGCGAGAAAGAAAGAAAGAATG  50

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGGAAGGGGAG  96
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGATAGAAAGAAAGAAAGAAAGAAAGAAAGGGAAGGGGAG  100

seq1  GGGAGGGGCTAGAGAGTTGGCTCAGTGGTTAAGGGCACTTGTTCTTGTGA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGCTAGAGAGTTGGCTCAGTGGTTAAGGGCACTTGTTCTTGTGA  150

seq1  AAGGCCTGAACTCAATTCCCTGAATCAGCCTGGAGGCTCACCACCTCCTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGAACTCAATTCCCTGAATCAGCCTGGAGGCTCACCACCTCCTT  200

seq1  AGGCAACAAGCACTCAAATAGTGTACAGACACAGACACACAAAATGCTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACAAGCACTCAAATAGTGTACAGACACAGACACACAAAATGCTGA  250

seq1  AAATCACAGCTGGTGGTGGCGCACATTTTAAATCCCAACACTCAGGAGGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAGCTGGTGGTGGCGCACATTTTAAATCCCAACACTCAGGAGGC  300

seq1  AGAGGCAGGTGGATCTCTCTGAGTTTGAGACCAGCCTGGTCTACAGATT  345
      |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGAGGCAGGTGGATCTCTCTGAGTTTGAGACCAGCCTGGTCTTCAGATT  349