BAC Information

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BAC

Clone NameB6Ng01-102G02
Chromosome11 (Build37)
Map Location 50,121,208 - 50,122,355
singlet/doubletsinglet
Overlap geneCanx
Upstream geneOlfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1
Downstream gene1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102G02.bB6Ng01-102G02.g
ACCDH911289DH911290
length1,1311,183
definitionDH911289|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G02, 5' end.DH911290|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagagcaaactttgaaaaacacatacttcctctcataaaactg
catgcaaattattctattagctttaaagaaaaccttatgattttatagtg
cttcttcagataccaatcaaaaataactggcaaccaccagaaatactaaa
atgcttttttaaagagaagttatgtacatacaaacttctttcaaaaacaa
gaaataaacttgagaaaactaaaaattgttagcacacaggtgaggcctcc
ctggtctacacagcaaactccatgcagcaagggatacccacccaatgata
tcctgtgtaaaaatacaaaacaaaacaataaaaaacctaaaaattccaca
gttaagaaagcagcaatgaaatacagctaaggcttctacagtcccctgtt
aaagttaaaaggccattagtgccaagtctccatggttcaccagcagcagc
atttcttttcataggtcttgcaaacttttctctctttaaatgatggggac
taaacccagggccctgtgaatggcagccatgtactctaccactgaactgc
ataccccccaagctcaagatcataaagcacatgttacacaaagagagagc
ctaccaggctgagctctgccgtcttggaaagcagcttcacataggcacca
ccacattctattccattctgaaaattaacctcatacctagtttcagagag
aaaagaaaaagtcctatggcattttgaaagatcatatttcctatatttcc
taattgatttctcccagcttggtcatgttttatcagatgtcatacccaca
caaaaggttccattgtctactgcttttatgtggccactcggccacacaaa
aatcaaaaaaacaaaataaaagtaatccttaatgcaaaagccagacattt
gtttgcttctaagaaggtaaacaaccagactgttttacaagaagataaaa
caaaccactcaacatattccaattcacacaaatcctactataaacatgat
ttttagaatgttcaactttcatactgtcacctgagattaccctttctaga
aaatatcagatgcacctgaactactgacatgagaggctggtatcaacaga
gctattcagttaggaagaaatggcatgatgc
gaattcaggacctctggaagagcagtcagtgctcttaacggcagagccat
cgctccagccccgccccctttggtttttcttaaacccaacaaatcttgca
gttttggaggtcagatgtttaaaattgcttggcagggctgcctctgttct
gaagttcttgggagaaaatctgttttcttttctttttttattattttaat
agtatcttttaattgagtatttgggaatttcacatcatgcaccccaattg
ccatcactccctgatctttccatgaccatccccttcttccatgacctccc
ccaccaaaaaaaaaaaaagaagggaaaaaataagtccattttgtgtggtc
catatattcgctggcgcatggtcaaattcctagtagccactctccccgcc
tccataagtctctctgcttgcatccgggccagaaaccttcaactgaggag
agagccctgcaggctgatggaaaggggtggggccagctctcctgcacagg
gtggggcctgccttccctcccttaagtacattaacatggcttgggggagg
ggcagcccattaacatgggcttccgtggtaacaagggctgcagatatcaa
cataacccttggcagtatcaagccactcatggccctcatcatcttcacag
gccacaggccacacggcctcaggtggctctacatgctggttatacggcat
ggcccttaaatgcccttaaggcagcaaagcctgaggatatcaccaaggcg
tgaggcagcagcacagattgcttaagtcctcgtggatctcacgcttcatc
tcttcctggggcaaccacatgggtcgcagtcaccaatatggcctccagtg
gcctcggggaccactatggtccaatccagcaagtgaaccttttctttttc
tccggcttccatcctgcccaggccagagagaccccgagcccagcagcagt
ctgagctgagtctgtgtctggataactccagctgctgtgtttcatcctac
tgactctactgagcatgacagtatgtcccccctcagcctctgtccttgca
caccatcgcagctccaatctgcctctctctaggactcgcatgcctatttc
atctcttaccttcacccgccatcaatgcatgagggttcaccgtcctgagc
catctgttcagggggtatgtgtgggggatacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50121208_50122355
seq2: B6Ng01-102G02.b_44_1174

seq1  GAATTCAAAGAGCAAACTTTGAAAAACACATACTTCCTCTCATAAAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGCAAACTTTGAAAAACACATACTTCCTCTCATAAAACTG  50

seq1  CATGCAAATTATTCTATTAGCTTTAAAGAAAACCTTATGATTTTATAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAATTATTCTATTAGCTTTAAAGAAAACCTTATGATTTTATAGTG  100

seq1  CTTCTTCAGATACCAATCAAAAATAACTGGCAACCACCAGAAATACTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAGATACCAATCAAAAATAACTGGCAACCACCAGAAATACTAAA  150

seq1  ATGCTTTTTTAAAGAGAAGTTATGTACATACAAACTTCTTTCAAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTTTAAAGAGAAGTTATGTACATACAAACTTCTTTCAAAAACAA  200

seq1  GAAATAAACTTGAGAAAACTAAAAATTGTTAGCACACAGGTGAGGCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAACTTGAGAAAACTAAAAATTGTTAGCACACAGGTGAGGCCTCC  250

seq1  CTGGTCTACACAGCAAACTCCATGCAGCAAGGGATACCCACCCAATGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACACAGCAAACTCCATGCAGCAAGGGATACCCACCCAATGATA  300

seq1  TCCTGTGTAAAAATACAAAACAAAACAATAAAAAACCTAAAAATTCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTAAAAATACAAAACAAAACAATAAAAAACCTAAAAATTCCACA  350

seq1  GTTAAGAAAGCAGCAATGAAATACAGCTAAGGCTTCTACAGTCCCCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAAAGCAGCAATGAAATACAGCTAAGGCTTCTACAGTCCCCTGTT  400

seq1  AAAGTTAAAAGGCCATTAGTGCCAAGTCTCCATGGTTCACCAGCAGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAAAAGGCCATTAGTGCCAAGTCTCCATGGTTCACCAGCAGCAGC  450

seq1  ATTTCTTTTCATAGGTCTTGCAAACTTTTCTCTCTTTAAATGATGGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTCATAGGTCTTGCAAACTTTTCTCTCTTTAAATGATGGGGAC  500

seq1  TAAACCCAGGGCCCTGTGAATGGCAGCCATGTACTCTACCACTGAACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCAGGGCCCTGTGAATGGCAGCCATGTACTCTACCACTGAACTGC  550

seq1  ATACCCCCCAAGCTCAAGATCATAAAGCACATGTTACACAAAGAGAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCCCAAGCTCAAGATCATAAAGCACATGTTACACAAAGAGAGAGC  600

seq1  CTACCAGGCTGAGCTCTGCCGTCTTGGAAAGCAGCTTCACATAGGCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGGCTGAGCTCTGCCGTCTTGGAAAGCAGCTTCACATAGGCACCA  650

seq1  CCACATTCTATTCCATTCTGAAAATTAACCTCATACCTAGTTTCAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCTATTCCATTCTGAAAATTAACCTCATACCTAGTTTCAGAGAG  700

seq1  AAAAGAAAAAGTCCTATGGCATTTTGAAAGATCATATTTCCTATATTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAGTCCTATGGCATTTTGAAAGATCATATTTCCTATATTTCC  750

seq1  TAATTGATTTCTCCCAGCTTGGTCATGTTTTATCAGATGTCATACCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATTTCTCCCAGCTTGGTCATGTTTTATCAGATGTCATACCCACA  800

seq1  CAAAAGGTTCCATTGTCTACTGCTTTTATGTGGCCACTCGGCCACACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTTCCATTGTCTACTGCTTTTATGTGGCCACTCGGCCACACAAA  850

seq1  AATCAAAAAAACAAAATAAAAGTAATCCTTAATGCAAAAGCCAGACATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAAAACAAAATAAAAGTAATCCTTAATGCAAAAGCCAGACATTT  900

seq1  GTTTGCTTCTAAGAAGGTAAACAACCAGACTGTTTTACAAGAAGATAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTCTAAGAAGGTAAACAACCAGACTGTTTTACAAGAAGATAAAA  950

seq1  ACAAAACCACTCAACATATTCCAATTCACACAAAATTCCTACTATAAACA  1000
         |||||||||||||||||||||||||||||||  ||||||||||||||
seq2  --CAAACCACTCAACATATTCCAATTCACACAAA--TCCTACTATAAACA  996

seq1  TGATTTTTTAGAATGTTCAACTTTCATACTGTCACCTGAGATTACCCTTT  1050
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGA-TTTTTAGAATGTTCAACTTTCATACTGTCACCTGAGATTACCCTTT  1045

seq1  CTAGAAAATTATCAAGATGGCACTGAACTTACTGAACAATGAGAGGCTTG  1100
      |||||||| |||| |||||   |||||| ||||||   ||||||||| ||
seq2  CTAGAAAA-TATC-AGATGCACCTGAAC-TACTGA--CATGAGAGGC-TG  1089

seq1  GTATCAAACAGGAAGGGCTTATTCAGTTTAGCAGAGATGGCATGATGC  1148
      |||||||      || || |||||||||  | ||| ||||||||||||
seq2  GTATCAA-----CAGAGC-TATTCAGTTAGGAAGAAATGGCATGATGC  1131