BAC Information

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BAC

Clone NameB6Ng01-102G05
Chromosome11 (Build37)
Map Location 32,399,320 - 32,506,176
singlet/doubletdoublet
Overlap geneUbtd2, 1700007I06Rik, Stk10
Upstream gene2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b
Downstream geneFbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102G05.bB6Ng01-102G05.g
ACCDH911295DH911296
length1,0911,035
definitionDH911295|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G05, 5' end.DH911296|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,505,063 - 32,506,176)(32,399,320 - 32,400,360)
sequence
gaattcagtaaaaagaaaccaatctcccagctaaataaaggaacaaaaga
gtttgggacagacacctcacccagaagtggcatgcaggcagcaaggaagc
acacggttggttcagagcatctgtgtgatgtcatcgacacgtgctcacaa
tctgacttccaacccccacaagcttagcctgtctcaccctctctttcatt
tcccaggtttttatttttatattttaaaaaatatttatttatttatttaa
tatatgtaaattctctgttgctgtcttcagacacacaccagaagagggca
tccaattacagatggttgtgagccaccatgtagtttctgggaattgaact
catgacctctaggaaaggagccagtgttcttaagtgctgagccatctctg
gttccctccttgggtgactgtgttactgagagtgaggagggattacctat
gcattcacaggatgtcagcaggagatcaacagatggccccactccatccc
caaactgtgacaccctccaaaatgtgtgcagacactgtcaatgtcccaga
gagctggggacagaagactccagctcagaaacacagatttacataaaatt
cctaaaggaacagttcatttgtgtaccttggcctctgtgccaggcgtggc
atccagtcccagcccagtgaccgtgaccactctaccacatgacgtaagag
ctagactcagaactgaactttcactgattgctgattgctttgctttggga
gacagaacattaaaagcagcaatcgagcacagggtctgagtttcctttcg
aaggcatggaagacactagagacattctgatgacagtgggaaggggcaga
agaagaacgaagcagagtcctgtggggccacttggcaagaggcgggccca
aggactcctgggacatttgcagtgagccctgtctctggcagagagctgca
ttccaggcagtgaagtcatctactgcattggcaccccatttcccaccaga
aaacatctggcttttaactaagagccccaaggtctgcagcgatctggggt
gcaggctagggactcgaccatttaactagctgcatgacagg
gaattctgggacactgcaccagcttttgaaggccggaaagagatctggga
tgccttgaaggccgctgcacatgcttttgaaagcaatgatcatgaactgg
cacaggcaatcattgacggtgcaaacataacactaccacacggtaggttt
ggtgtcctgatgacaaaggggcatagcagaggaccacctggagagagact
ttttttttttttaatacattactcaattttttaaaaatttatttattttt
attttgtgtacatttgtaatttgactacatgtatgtctatgtgagggtgt
cggatcccctgggacaggagttaaagacagttgagagctgccatgtgtgt
gctgggacttcaactcaggtcctctggtagagcagccagtgctcttaacc
actgaaccatctctccagcaccctcattttttattgtagttaaaataaat
atatagcttttctctcttttttatttatttatttttatttttttggtggt
ttttcgagacagggtttctctgtatagccctggctgtcctggaactcact
ttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcc
cgagtgctgggattaaagccgtgcatcaccacgaccagcttctttttagc
tggttgtagtttgtgtcttggttcatttttatgtttcttaatctcagaaa
agagaacatttgctaaatgggtattttctactttctatgtgacttagttc
tctctagagacaagcccccagtctgcttccctcttgcagtgtacatcccc
acctggtggtagctgctgctgccaccactgccttaactactttcctgtca
gagttgaagttcatttttgaagattaatattggggtggggagcatacaga
agagatggctcagtgtttgctgctctagtagggatctgggttcagttccc
tcggtggctcgaaagtgtctgactcaggtccagggaaatctgattccctc
tctggcttctgcagcactgcgttatgtggccacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_32505063_32506176
seq2: B6Ng01-102G05.b_50_1140 (reverse)

seq1  CCTGTCATGCAGCTAAGTTTATAAATGGTTCTGAGTTCCCTAGCCCTGCA  50
      |||||||||||||| |||   ||||||||   ||| ||||||| ||||||
seq2  CCTGTCATGCAGCT-AGT---TAAATGGT--CGAG-TCCCTAG-CCTGCA  42

seq1  CACCAGATCGCTGCAAGGAACCCTGGGGGCTTCTTAGTTAAAAGCCAGAT  100
      | |||||||||||||  ||  ||| ||||| |||||||||||||||||||
seq2  CCCCAGATCGCTGCA--GA--CCTTGGGGC-TCTTAGTTAAAAGCCAGAT  87

seq1  TGTTTTTCTGGTTGGGAAAATGGGGTGCCAATGCAGTAGATGACTTCACT  150
         |||||||||  || |||||||||||||||||||||||||||||||||
seq2  --GTTTTCTGGT--GGGAAATGGGGTGCCAATGCAGTAGATGACTTCACT  133

seq1  GCCCTGGAATGCAGCTTCTCTGCCAGAGAACAGGGCTCACTGCAAATGGT  200
      | ||||||||||||| |||||||||||| |||||||||||||||||| ||
seq2  G-CCTGGAATGCAGC-TCTCTGCCAGAG-ACAGGGCTCACTGCAAAT-GT  179

seq1  CCCAGGAGTCCTTGGGCCCGCCTCTTTGCCAAGTGGCCCCACAGGACTCT  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCAGGAGTCCTTGGGCCCGCCTC-TTGCCAAGTGGCCCCACAGGACTCT  228

seq1  GCCTTCGTTCTTCTTCTGCCCCTTCCCACTGTCATCAGAATGTCTCTAGT  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-CTTCGTTCTTCTTCTGCCCCTTCCCACTGTCATCAGAATGTCTCTAGT  277

seq1  GTCTTCCATGCCTTCGAAAGGAAACTCAGACCCTGTGCTCGATTGCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCATGCCTTCGAAAGGAAACTCAGACCCTGTGCTCGATTGCTGCT  327

seq1  TTTAATGTTCTGTCTCCCAAAGCAAAGCAATCAGCAATCAGTGAAAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTTCTGTCTCCCAAAGCAAAGCAATCAGCAATCAGTGAAAGTTC  377

seq1  AGTTCTGAGTCTAGCTCTTACGTCATGTGGTAGAGTGGTCACGGTCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGTCTAGCTCTTACGTCATGTGGTAGAGTGGTCACGGTCACTG  427

seq1  GGCTGGGACTGGATGCCACGCCTGGCACAGAGGCCAAGGTACACAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGACTGGATGCCACGCCTGGCACAGAGGCCAAGGTACACAAATGA  477

seq1  ACTGTTCCTTTAGGAATTTTATGTAAATCTGTGTTTCTGAGCTGGAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCCTTTAGGAATTTTATGTAAATCTGTGTTTCTGAGCTGGAGTCT  527

seq1  TCTGTCCCCAGCTCTCTGGGACATTGACAGTGTCTGCACACATTTTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCCAGCTCTCTGGGACATTGACAGTGTCTGCACACATTTTGGAG  577

seq1  GGTGTCACAGTTTGGGGATGGAGTGGGGCCATCTGTTGATCTCCTGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCACAGTTTGGGGATGGAGTGGGGCCATCTGTTGATCTCCTGCTGA  627

seq1  CATCCTGTGAATGCATAGGTAATCCCTCCTCACTCTCAGTAACACAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTGAATGCATAGGTAATCCCTCCTCACTCTCAGTAACACAGTCA  677

seq1  CCCAAGGAGGGAACCAGAGATGGCTCAGCACTTAAGAACACTGGCTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGAGGGAACCAGAGATGGCTCAGCACTTAAGAACACTGGCTCCTT  727

seq1  TCCTAGAGGTCATGAGTTCAATTCCCAGAAACTACATGGTGGCTCACAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGGTCATGAGTTCAATTCCCAGAAACTACATGGTGGCTCACAAC  777

seq1  CATCTGTAATTGGATGCCCTCTTCTGGTGTGTGTCTGAAGACAGCAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTAATTGGATGCCCTCTTCTGGTGTGTGTCTGAAGACAGCAACAG  827

seq1  AGAATTTACATATATTAAATAAATAAATAAATATTTTTTAAAATATAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTACATATATTAAATAAATAAATAAATATTTTTTAAAATATAAAA  877

seq1  ATAAAAACCTGGGAAATGAAAGAGAGGGTGAGACAGGCTAAGCTTGTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACCTGGGAAATGAAAGAGAGGGTGAGACAGGCTAAGCTTGTGGG  927

seq1  GGTTGGAAGTCAGATTGTGAGCACGTGTCGATGACATCACACAGATGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAAGTCAGATTGTGAGCACGTGTCGATGACATCACACAGATGCTC  977

seq1  TGAACCAACCGTGTGCTTCCTTGCTGCCTGCATGCCACTTCTGGGTGAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAACCGTGTGCTTCCTTGCTGCCTGCATGCCACTTCTGGGTGAGG  1027

seq1  TGTCTGTCCCAAACTCTTTTGTTCCTTTATTTAGCTGGGAGATTGGTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCCCAAACTCTTTTGTTCCTTTATTTAGCTGGGAGATTGGTTTC  1077

seq1  TTTTTACTGAATTC  1114
      ||||||||||||||
seq2  TTTTTACTGAATTC  1091

seq1: chr11_32399320_32400360
seq2: B6Ng01-102G05.g_68_1102

seq1  GAATTCTGGGACACTGCACCAGCTTTTGAAGGCCGGAAAGAGATCTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGACACTGCACCAGCTTTTGAAGGCCGGAAAGAGATCTGGGA  50

seq1  TGCCTTGAAGGCCGCTGCACATGCTTTTGAAAGCAATGATCATGAACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGAAGGCCGCTGCACATGCTTTTGAAAGCAATGATCATGAACTGG  100

seq1  CACAGGCAATCATTGACGGTGCAAACATAACACTACCACACGGTAGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAATCATTGACGGTGCAAACATAACACTACCACACGGTAGGTTT  150

seq1  GGTGTCCTGATGACAAAGGGGCATAGCAGAGGACCACCTGGAGAGAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCTGATGACAAAGGGGCATAGCAGAGGACCACCTGGAGAGAGACT  200

seq1  TTTTTTTTTTTTAATACATTACTCAATTTTTTAAAAATTTATTTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAATACATTACTCAATTTTTTAAAAATTTATTTATTTTT  250

seq1  ATTTTGTGTACATTTGTAATTTGACTACATGTATGTCTATGTGAGGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGTACATTTGTAATTTGACTACATGTATGTCTATGTGAGGGTGT  300

seq1  CGGATCCCCTGGGACAGGAGTTAAAGACAGTTGAGAGCTGCCATGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCCCCTGGGACAGGAGTTAAAGACAGTTGAGAGCTGCCATGTGTGT  350

seq1  GCTGGGACTTCAACTCAGGTCCTCTGGTAGAGCAGCCAGTGCTCTTAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGACTTCAACTCAGGTCCTCTGGTAGAGCAGCCAGTGCTCTTAACC  400

seq1  ACTGAACCATCTCTCCAGCACCCTCATTTTTTATTGTAGTTAAAATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCATCTCTCCAGCACCCTCATTTTTTATTGTAGTTAAAATAAAT  450

seq1  ATATAGCTTTTCTCTCTTTTTTATTTATTTATTTTTATTTTTTTGGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTTTTCTCTCTTTTTTATTTATTTATTTTTATTTTTTTGGTGGT  500

seq1  TTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACT  550

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCC  600

seq1  CGAGTGCTGGGATTAAAGCCGTGCATCACCACGACCAGCTTCTTTTTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCTGGGATTAAAGCCGTGCATCACCACGACCAGCTTCTTTTTAGC  650

seq1  TGGTTGTAGTTTGTGTCTTGGTTCATTTTTATGTTTCTTAATCTCAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTAGTTTGTGTCTTGGTTCATTTTTATGTTTCTTAATCTCAGAAA  700

seq1  AGAGAACATTTGCTAAATGGGTATTTTCTACTTTCTATGTGACTTAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACATTTGCTAAATGGGTATTTTCTACTTTCTATGTGACTTAGTTC  750

seq1  TCTCTAGAGACAAGCCCCCAGTCTGCTTCCCTCTTGCAGTGTACATCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAGACAAGCCCCCAGTCTGCTTCCCTCTTGCAGTGTACATCCCC  800

seq1  ACCTGGTGGTAGCTGCTGCTGCCACCACTGCCTTAACTACTTTCCTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGGTAGCTGCTGCTGCCACCACTGCCTTAACTACTTTCCTGTCA  850

seq1  GAGTTGAAGTTCATTTTTGAAGATTAATATTTGGGGTGGGGAGCATACAG  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGTTGAAGTTCATTTTTGAAGATTAATA-TTGGGGTGGGGAGCATACAG  899

seq1  AAGAGATGGCTCAGTGTTTGCTGCTCTAGTAGGGGATCTGGGTTCAGTTC  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  AAGAGATGGCTCAGTGTTTGCTGCTCTAGTA-GGGATCTGGGTTCAGTT-  947

seq1  CCCTCGGTGGCTCGAAAGTGTCTGACTCCAGGTCCAGGGAAATCTGATTC  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCTCGGTGGCTCGAAAGTGTCTGACT-CAGGTCCAGGGAAATCTGATTC  996

seq1  CCTCTCTGGCTTCTGCAGGCACTGCGTTATGTGGCACACAC  1041
      ||||||||||||||||| ||||||||||||||||| |||||
seq2  CCTCTCTGGCTTCTGCA-GCACTGCGTTATGTGGC-CACAC  1035