BAC Information

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BAC

Clone NameB6Ng01-102K06
Chromosome11 (Build37)
Map Location 108,684,206 - 108,871,929
singlet/doubletdoublet
Overlap geneCcdc46, LOC629945, Axin2
Upstream geneCacng5, Prkca, Apoh, LOC100041381, Olfr1397-ps1
Downstream geneE030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102K06.bB6Ng01-102K06.g
ACCDH911472DH911473
length755508
definitionDH911472|Mus musculus domesticus DNA, BAC clone: B6Ng01-102K06, 5' end.DH911473|Mus musculus domesticus DNA, BAC clone: B6Ng01-102K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,871,177 - 108,871,929)(108,684,206 - 108,684,719)
sequence
gaattcatcctgatttgtgtgcttgattgttgtttatgcccttttttggg
gggatgggggtgggacagggtctctctgtagagctctgactagcccagat
ttcactctatagaccaggctgtccttgaaacagcagtgatcttcctgttt
ctacctcctgtgctggaattacaggcatatgtcaccatgttgacttccca
gttttaaaatgggaggtctcacacctgaagaatgttcttactctagaaaa
actggagcaactgatcctcgggtagaaacccaaccagttcatgtcgaatc
tcctagatctgctacttgctgacttgcaggtgtccttaagaagacaacac
actgccgggcagtggtggctcacgcctttaatcccagcacttggaaggca
gaggcaggcggatttctgagttcgaggccagcctggtctacagagtgagt
tccaggatagccagggctatacagagaaaccttgtctcgaaaaaaacaat
atatatatatatatatatatatatatatatatatatatatatatcctcac
tttgtctctgttgcaggcatataagccctttctatacatatcaagggttg
agattaggatctgaacccaaacttgctttaaaatagttaacaagaaaggt
tattgatattttattttcccaaataatatggcatgaatagctagattttt
gtatggcattatatcagaatagacacctagaagattattgagcaatatga
agtaa
ctgcaactgagtgaacagctgagaagaggaagtgagggagagataaacag
agatgctgaggaggctggggtcaagaagtatgctgaaaagagcgagatgc
ctgtgtcttcaggagagcacccagcattcaaaaatgccaccaactctagt
tccattttcactttagtccagccaaaaatatctccttttcctgttgaaaa
gagccatcatgagtagaagctgttaaggttgactggttgtaagccagtca
aagtggatgtaagagtgaactgtcttagtacagtgagctgttgtcaggta
gatgctgtgctagattactaaatcataaagaatcagtagtgtcacacgcc
tttaatcccagaactcaggaggcagcggcaggctgatctctatgagtttg
aggctagcatggtctacatagcaagttccaggccagacaagaatgaggcc
ttgtctcaaaataatcaaaaaggaagggatggatggatggatggatggat
ggatggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_108871177_108871929
seq2: B6Ng01-102K06.b_41_795 (reverse)

seq1  TTACTTCATAATTGCTCAATAATCTTCTAGGTGTCTATTCTGATATAATG  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCAT-ATTGCTCAATAATCTTCTAGGTGTCTATTCTGATATAATG  49

seq1  CCATAC-AAAATCTAGCTATTCATGCCATATTATTTGGGAAAATAAAATA  99
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAAAAATCTAGCTATTCATGCCATATTATTTGGGAAAATAAAATA  99

seq1  TCAATAACCTTTCTTGTTAACTATTTT-AAGCAAGTTTGGGTTCAGATCC  148
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAATAACCTTTCTTGTTAACTATTTTAAAGCAAGTTTGGGTTCAGATCC  149

seq1  TAATCTCAACCCTTGATATGTATAGAAAGGGCTTATATGCCTGCAACAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAACCCTTGATATGTATAGAAAGGGCTTATATGCCTGCAACAGA  199

seq1  GAC-AAGTGAGGATATATATATATATATATATATATATATATATATATAT  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTGAGGATATATATATATATATATATATATATATATATATATAT  249

seq1  ATATATATTGTTTTTTTCGAGACAAGGTTTCTCTGTATAGCCCTGGCTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTGTTTTTTTCGAGACAAGGTTTCTCTGTATAGCCCTGGCTAT  299

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  349

seq1  TGCCTCTGCCTTCCAAGTGCTGGGATTAAAGGCGTGAGCCACCACTGCCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTTCCAAGTGCTGGGATTAAAGGCGTGAGCCACCACTGCCC  399

seq1  GGCAGTGTGTTGTCTTCTTAAGGACACCTGCAAGTCAGCAAGTAGCAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGTGTTGTCTTCTTAAGGACACCTGCAAGTCAGCAAGTAGCAGAT  449

seq1  CTAGGAGATTCGACATGAACTGGTTGGGTTTCTACCCGAGGATCAGTTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGATTCGACATGAACTGGTTGGGTTTCTACCCGAGGATCAGTTGC  499

seq1  TCCAGTTTTTCTAGAGTAAGAACATTCTTCAGGTGTGAGACCTCCCATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTTTCTAGAGTAAGAACATTCTTCAGGTGTGAGACCTCCCATTT  549

seq1  TAAAACTGGGAAGTCAACATGGTGACATATGCCTGTAATTCCAGCACAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGGGAAGTCAACATGGTGACATATGCCTGTAATTCCAGCACAGG  599

seq1  AGGTAGAAACAGGAAGATCACTGCTGTTTCAAGGACAGCCTGGTCTATAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAACAGGAAGATCACTGCTGTTTCAAGGACAGCCTGGTCTATAG  649

seq1  AGTGAAATCTGGGCTAGTCAGAGCTCTACAGAGAGACCCTGTCCCACCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATCTGGGCTAGTCAGAGCTCTACAGAGAGACCCTGTCCCACCCC  699

seq1  CATCCCCCCAAAAAAGGGCATAAACAACAATCAAGCACACAAATCAGGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCCAAAAAAGGGCATAAACAACAATCAAGCACACAAATCAGGAT  749

seq1  GAATTC  753
      ||||||
seq2  GAATTC  755

seq1: chr11_108684206_108684719
seq2: B6Ng01-102K06.g_68_581

seq1  GAATTCCTGCAACTGAGTGAACAGCTGAGAAGAGGAAGTGAGGGAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAACTGAGTGAACAGCTGAGAAGAGGAAGTGAGGGAGAGAT  50

seq1  AAACAGAGATGCTGAGGAGGCTGGGGTCAAGAAGTATGCTGAAAAGAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGATGCTGAGGAGGCTGGGGTCAAGAAGTATGCTGAAAAGAGCG  100

seq1  AGATGCCTGTGTCTTCAGGAGAGCACCCAGCATTCAAAAATGCCACCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTGTGTCTTCAGGAGAGCACCCAGCATTCAAAAATGCCACCAAC  150

seq1  TCTAGTTCCATTTTCACTTTAGTCCAGCCAAAAATATCTCCTTTTCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTCCATTTTCACTTTAGTCCAGCCAAAAATATCTCCTTTTCCTGT  200

seq1  TGAAAAGAGCCATCATGAGTAGAAGCTGTTAAGGTTGACTGGTTGTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGCCATCATGAGTAGAAGCTGTTAAGGTTGACTGGTTGTAAGC  250

seq1  CAGTCAAAGTGGATGTAAGAGTGAACTGTCTTAGTACAGTGAGCTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAAGTGGATGTAAGAGTGAACTGTCTTAGTACAGTGAGCTGTTGT  300

seq1  CAGGTAGATGCTGTGCTAGATTACTAAATCATAAAGAATCAGTAGTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGATGCTGTGCTAGATTACTAAATCATAAAGAATCAGTAGTGTCA  350

seq1  CACGCCTTTAATCCCAGAACTCAGGAGGCAGCGGCAGGCTGATCTCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTAATCCCAGAACTCAGGAGGCAGCGGCAGGCTGATCTCTATG  400

seq1  AGTTTGAGGCTAGCATGGTCTACATAGCAAGTTCCAGGCCAGACAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGGCTAGCATGGTCTACATAGCAAGTTCCAGGCCAGACAAGAAT  450

seq1  GAGGCCTTGTCTCAAAATAATCAAAAAGGAAGGGATGGATGGATGGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTGTCTCAAAATAATCAAAAAGGAAGGGATGGATGGATGGATGG  500

seq1  ATGGATGGATGGAT  514
      ||||||||||||||
seq2  ATGGATGGATGGAT  514