BAC Information

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BAC

Clone NameB6Ng01-102M20
Chromosome11 (Build37)
Map Location 112,701,001 - 112,855,058
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
Downstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102M20.bB6Ng01-102M20.g
ACCDH911589DH911590
length1,0311,141
definitionDH911589|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M20, 5' end.DH911590|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,854,206 - 112,855,058)(112,701,001 - 112,702,144)
sequence
gaattcaatcaatgctggatggaatatgtattttttttaattctggaaaa
ttccaaacaataaaatccgagcgtaccgcacactgtgtactgctccacct
ccattgcaccagagtgatcctaagatgctacattaagtattgtaagtaac
ttcgagatgattgaacttgcagagggagtgtgacggttacgtgcacttac
tgtcattatgcttaacagacttgagcatctgtgggtttgggtataataga
gatcctgaaaccagtgtcccatggataccatgagataactgcgtgtctac
acatacatgtgcacacacacacacacacactcacacaatatctattgttc
tatttctctacaggaccttgattcataaacatatctagccttctttaaaa
acactatttttaatctttgaagttgtcctacatttatttggtgtgtattg
attatattcacccaccactaccttcctccaatttcctctagtactctgta
tccatttccttcccaacttcagaacctcctttaaaaaaactattacaatt
tttaacaccctgagtctagttagcattgcccgtatgtgcttgggtgtggg
gttatccactggggaacgagcagcctaccagcagggccatatatattccc
ccaaagacaatgtgtctccctccttccacagctgctaagagcttgtccta
tggaagtggagggtctcagagaaccctcccccaatctgtgctggaattct
cactggcttgatcttatgcaggtcttgagtagaaaaaccacatctgctgt
cagtcttggagaggccacgttgtcacatctggaaggtcatatttccacat
ctctgtcccttcaggcaggctttatcgttgcccgtatttgaataccaaga
agagggtattttaagacccacagacgagacttcacaccagaatctcacaa
agcactgctggcccagatcctgcctgctgtttgcagagatgccagctttt
catgtcttagctcagctgtctttggtctctg
gaattcttcagggaccatcgcttgacttttttttccacttacttccttgc
gacccactgtggttcttggcacttagtaggacctcagtaaatacagtcat
tgagttgaatgtcacgaaggagccttcagggatgccatgtcctactttta
aaaagctctttaggagaggacaaaggcatagaagatactgtcggggaccc
aggattccagcttggcaggatagagacaaagagttcaatgggttcatttg
cattttgttttgcataaatatgcaagctgagtggctgagcccgagtctcc
aaagatgtcaaatggcaactggctgtgttttcaaataggatattcagttc
ttattacacagaggattcccaccccaaagaggttgctacttctgtccttg
ttttggtgagacaccacccctaccctcccaccccctcacccccccacccc
cgatctcctctaaaccagtgtccctagagagagcttttcctgttgctgac
catctccccacactcactccctgcagaaacctccgccagccggtttaagg
tgtggtggactctagagagggccctgttgacagagcttaaaacaacctcc
cttttcacccttaggctccacagacgcaaagagccaagttgggacagcga
ctttgtcctggctgaggctgcaggtgcaggagtttcaaaaacacaaaatg
acgcttaaataaaaaaaaaaacaaaaaaaaacaaaacaaaacaaacccct
ccttttactgaagcaggtcccagtgctgggaagcttggggtttcccccct
tcagttaatccagtcgccctgatttgcatgggatttgcataaacagcacg
tcgtattcaaatagccctcacttcggggccaagattaaggttgaggattt
gtcccacccgcagtagttttgttcaacctctactgcttagaagctcggac
actaaaatagcttcttttatatactggtcccagtgaaaaagaataataag
agggtatgcaaagcccttgtcagagaaggcggcctatcaaccgccccagt
ctcgctcttctccatacgggagtggaacgcaaaggtattttcgaaccact
cccagtctggaattctaataaatcttctgctggaagccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_112854206_112855058
seq2: B6Ng01-102M20.b_49_901 (reverse)

seq1  GAGATGTGGAAATATGACCTTCCAGATGTGACAACGTGGCCTCTCCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGGAAATATGACCTTCCAGATGTGACAACGTGGCCTCTCCAAGA  50

seq1  CTGACAGCAGATGTGGTTTTTCTACTCAAGACCTGCATAAGATCAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCAGATGTGGTTTTTCTACTCAAGACCTGCATAAGATCAAGCCA  100

seq1  GTGAGAATTCCAGCACAGATTGGGGGAGGGTTCTCTGAGACCCTCCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATTCCAGCACAGATTGGGGGAGGGTTCTCTGAGACCCTCCACTT  150

seq1  CCATAGGACAAGCTCTTAGCAGCTGTGGAAGGAGGGAGACACATTGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGACAAGCTCTTAGCAGCTGTGGAAGGAGGGAGACACATTGTCTT  200

seq1  TGGGGGAATATATATGGCCCTGCTGGTAGGCTGCTCGTTCCCCAGTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAATATATATGGCCCTGCTGGTAGGCTGCTCGTTCCCCAGTGGAT  250

seq1  AACCCCACACCCAAGCACATACGGGCAATGCTAACTAGACTCAGGGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACACCCAAGCACATACGGGCAATGCTAACTAGACTCAGGGTGTT  300

seq1  AAAAATTGTAATAGTTTTTTTAAAGGAGGTTCTGAAGTTGGGAAGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGTAATAGTTTTTTTAAAGGAGGTTCTGAAGTTGGGAAGGAAAT  350

seq1  GGATACAGAGTACTAGAGGAAATTGGAGGAAGGTAGTGGTGGGTGAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGAGTACTAGAGGAAATTGGAGGAAGGTAGTGGTGGGTGAATAT  400

seq1  AATCAATACACACCAAATAAATGTAGGACAACTTCAAAGATTAAAAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATACACACCAAATAAATGTAGGACAACTTCAAAGATTAAAAATAG  450

seq1  TGTTTTTAAAGAAGGCTAGATATGTTTATGAATCAAGGTCCTGTAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAAGAAGGCTAGATATGTTTATGAATCAAGGTCCTGTAGAGAA  500

seq1  ATAGAACAATAGATATTGTGTGAGTGTGTGTGTGTGTGTGTGCACATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACAATAGATATTGTGTGAGTGTGTGTGTGTGTGTGTGCACATGTA  550

seq1  TGTGTAGACACGCAGTTATCTCATGGTATCCATGGGACACTGGTTTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGACACGCAGTTATCTCATGGTATCCATGGGACACTGGTTTCAGG  600

seq1  ATCTCTATTATACCCAAACCCACAGATGCTCAAGTCTGTTAAGCATAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATTATACCCAAACCCACAGATGCTCAAGTCTGTTAAGCATAATG  650

seq1  ACAGTAAGTGCACGTAACCGTCACACTCCCTCTGCAAGTTCAATCATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGTGCACGTAACCGTCACACTCCCTCTGCAAGTTCAATCATCTC  700

seq1  GAAGTTACTTACAATACTTAATGTAGCATCTTAGGATCACTCTGGTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTACTTACAATACTTAATGTAGCATCTTAGGATCACTCTGGTGCAA  750

seq1  TGGAGGTGGAGCAGTACACAGTGTGCGGTACGCTCGGATTTTATTGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGGAGCAGTACACAGTGTGCGGTACGCTCGGATTTTATTGTTTG  800

seq1  GAATTTTCCAGAATTAAAAAAAATACATATTCCATCCAGCATTGATTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCCAGAATTAAAAAAAATACATATTCCATCCAGCATTGATTGAA  850

seq1  TTC  853
      |||
seq2  TTC  853

seq1: chr11_112701001_112702144
seq2: B6Ng01-102M20.g_70_1210

seq1  GAATTCTTCAGGGACCATCGCTTGACTTTTTTTTCCACTTACTTCCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGGACCATCGCTTGACTTTTTTTTCCACTTACTTCCTTGC  50

seq1  GACCCACTGTGGTTCTTGGCACTTAGTAGGACCTCAGTAAATACAGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACTGTGGTTCTTGGCACTTAGTAGGACCTCAGTAAATACAGTCAT  100

seq1  TGAGTTGAATGTCACGAAGGAGCCTTCAGGGATGCCATGTCCTACTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGAATGTCACGAAGGAGCCTTCAGGGATGCCATGTCCTACTTTTA  150

seq1  AAAAGCTCTTTAGGAGAGGACAAAGGCATAGAAGATACTGTCGGGGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCTTTAGGAGAGGACAAAGGCATAGAAGATACTGTCGGGGACCC  200

seq1  AGGATTCCAGCTTGGCAGGATAGAGACAAAGAGTTCAATGGGTTCATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCCAGCTTGGCAGGATAGAGACAAAGAGTTCAATGGGTTCATTTG  250

seq1  CATTTTGTTTTGCATAAATATGCAAGCTGAGTGGCTGAGCCCGAGTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTTTGCATAAATATGCAAGCTGAGTGGCTGAGCCCGAGTCTCC  300

seq1  AAAGATGTCAAATGGCAACTGGCTGTGTTTTCAAATAGGATATTCAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTCAAATGGCAACTGGCTGTGTTTTCAAATAGGATATTCAGTTC  350

seq1  TTATTACACAGAGGATTCCCACCCCAAAGAGGTTGCTACTTCTGTCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACACAGAGGATTCCCACCCCAAAGAGGTTGCTACTTCTGTCCTTG  400

seq1  TTTTGGTGAGACACCACCCCTACCCTCCCACCCCCTCACCCCCCCACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGAGACACCACCCCTACCCTCCCACCCCCTCACCCCCCCACCCC  450

seq1  CGATCTCCTCTAAACCAGTGTCCCTAGAGAGAGCTTTTCCTGTTGCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTCCTCTAAACCAGTGTCCCTAGAGAGAGCTTTTCCTGTTGCTGAC  500

seq1  CATCTCCCCACACTCACTCCCTGCAGAAACCTCCGCCAGCCGGTTTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCCACACTCACTCCCTGCAGAAACCTCCGCCAGCCGGTTTAAGG  550

seq1  TGTGGTGGACTCTAGAGAGGGCCCTGTTGACAGAGCTTAAAACAACCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGACTCTAGAGAGGGCCCTGTTGACAGAGCTTAAAACAACCTCC  600

seq1  CTTTTCACCCTTAGGCTCCACAGACGCAAAGAGCCAAGTTGGGACAGCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACCCTTAGGCTCCACAGACGCAAAGAGCCAAGTTGGGACAGCGA  650

seq1  CTTTGTCCTGGCTGAGGCTGCAGGTGCAGGAGTTTCAAAAACACAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCTGGCTGAGGCTGCAGGTGCAGGAGTTTCAAAAACACAAAATG  700

seq1  ACGCTTAAAT-AAAAAAAAAACAAAAAAAAACAAAACAAAACAAAACCCC  749
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  ACGCTTAAATAAAAAAAAAAACAAAAAAAAACAAAACAAAAC-AAACCCC  749

seq1  TCCTCTTTACTGAAGCAGGTCCCAGTGCTGGGAAGCTTGGGGTTTCCCCC  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCT-TTTACTGAAGCAGGTCCCAGTGCTGGGAAGCTTGGGGTTTCCCCC  798

seq1  CTTCAGTTAATCCAGTCGCCCTGATTTGCATGGGATTTGCATAAACAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTAATCCAGTCGCCCTGATTTGCATGGGATTTGCATAAACAGCA  848

seq1  CGTCGTATTCAAATAGCCCTCACTTCAAGGGCCAAGATTAAGGTTGAGGA  899
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  CGTCGTATTCAAATAGCCCTCACTTC-GGGGCCAAGATTAAGGTTGAGGA  897

seq1  TTTGTCCCACCCGCAGTAGTTTTGTTCAACCTCTACTGCTTAGAAGCTCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCACCCGCAGTAGTTTTGTTCAACCTCTACTGCTTAGAAGCTCG  947

seq1  GACACCTAAAATAGCT--CTTTATATACTGGTCCAAGTGAAAAAGATACA  997
      |||| |||||||||||   ||||||||||||||| |||||||||||   |
seq2  GACA-CTAAAATAGCTTCTTTTATATACTGGTCCCAGTGAAAAAGAATAA  996

seq1  TAAGAGGGGATGCAGAGCCC-TGGCAGAGAGGCGGGCCTATCCACCGCCC  1046
      |||||||| ||||| ||||| || |||||| |  |||||||| |||||||
seq2  TAAGAGGGTATGCAAAGCCCTTGTCAGAGAAGGCGGCCTATCAACCGCCC  1046

seq1  CAGTCTCGCTCTCTCCCAGGACGGGAAGTGGAACGCAAAGTTATTTTCAG  1096
      |||||||||||| || |   ||||| |||||||||||||| |||||||  
seq2  CAGTCTCGCTCT-TCTCCATACGGG-AGTGGAACGCAAAGGTATTTTCGA  1094

seq1  ACCACTCCCAGTTCTGGAATTCTCTATAAATC-TCTGCTGGATGCCAGG  1144
      ||||||||||| |||||||||||  ||||||| ||||||||| ||||||
seq2  ACCACTCCCAG-TCTGGAATTCT-AATAAATCTTCTGCTGGAAGCCAGG  1141