BAC Information

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BAC

Clone NameB6Ng01-102N09
Chromosome11 (Build37)
Map Location 116,435,736 - 116,536,501
singlet/doubletdoublet
Overlap geneUbe2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik
Upstream geneNup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1
Downstream geneSt6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102N09.bB6Ng01-102N09.g
ACCDH911611DH911612
length1,1561,095
definitionDH911611|Mus musculus domesticus DNA, BAC clone: B6Ng01-102N09, 5' end.DH911612|Mus musculus domesticus DNA, BAC clone: B6Ng01-102N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,535,329 - 116,536,501)(116,435,736 - 116,436,847)
sequence
gaattccacaagtacagctactttagtgtaagcccatatccaccccccag
attccatagagaaaaaggacacagtgtacactgcattactaaggctgggc
tgagcaaagcccccccccccccaagcccgccacttgtttctgtgccatca
aggagacgatacttaggaggctgccagggccacaacttcttttctaaatg
tcagcaccgctagaggcaacgacagagtcgtcaagcattctcatggcacg
ccttacatccctgcctcctctaaaggaagacattcattttctagaactat
gtgaccagcatgtctcactccagtgagcacaggacaggtgctggcagccc
gcccatttctgctaactcagggactttgccctcagagcacccaaggagga
ggattaacaggcaactagaccttaggttttgggaggttggcacacagctc
tctatggagtctatttaacttgatcccttataaagctcaaatttcttcaa
gcatggagccacacccctaagcctcagaatagagtattttccctcagctg
aaatcttcagacagggataaccaatccatcataggcttatgggcttttcg
ggaacacaaaatgagaacatgaaaatcccagcacctgaaaggccacaaac
tgagtttgaggtcaaccaggtctacatagcaagttgcaggccagcacggg
ctacacagtaagactaaagggaggaagggttacactcgattctgcagcac
ctgatctaacagactaacccttcccagcaaccacaacccctgcaattctg
tgaagctcttaccagatagaggcatcccgaaggccctttctttcgatggt
gattttgtgccacgccttacgatgagccaaccgggaatctgagtaacgaa
gacaacacacctcactctaacagaagcaatctactgtggacatctcaaaa
taggtctaaaagtcgagctcagtaaaccatgactcttcagaagtgtcatt
tcagacaggataacttaaatcattctcagctcatcagtgacaatcgcttg
tctgtcaaagaagagctacaatcttagcgaagaaacgaaaaaatctgctg
agacttgctgccttagccaaccctcagcaggtacagactgggtgcactga
tgtcca
gaattccatgaggcccaatgttgtgtaaaataataaaagagaaagttctt
gatcaaacaaaaatgagaaaggaaaaagcaaggccatcaatgaagcaggg
aaggcacgaaacaccttgcatgtcctgaagcagaaaacagaccacaggcc
agagggaggaagggactgaggcagagctcaggcttcccaaggaatcgctc
ttggccctgattcatgagtcagcattcccagcagcaggggacagcaggtc
aggctggagtcccactattgacagttttcagggatacagaagccctcttg
cttctagcagtggaaggcggcccttggtaggtcggtgctggactgaggca
ggctagtgctctattcactcaacattctaggcaatcaaaggttccccaga
aatagtgtttttgaacgccaaggtcagtaaccgcatcttgatcagacagt
tgccatgagcacagagtacagcactaagtgcctggggcacaacaaccgtg
atgggtttgagctgtgatcctaggacaatgcatcattccgacccttagga
ttcatctattacctctctctgggaacttcaaaagaagtcttccagccacg
tggtgaagcgcacctttaatcatagcttttggggaggcagaggccagtct
ggtctgcatgcttacacagatctgagtttcagggtagccagtactacagt
gagactattagctcagaaataaccgtggctgccgccactgccagtaatga
ccatctccagacccggggagccacagggacagctgagtacctatctgtgt
agtcatctgttctgcctgctcctggagatgctacattaactagcgactac
taaattacttacaaagtcatgagatctcatgagcactgctggaaaaagct
ctcactcacagctgtcaccactactcccgcctatgacataggagtgagaa
ttccctgtcactacacagcttccaggagcctcttgctgtggcccccatga
gtccaaaagggatatctgagcatcagatcatgaggctctccaggcacaag
aggggctgtctgctgacccttctgcaagtccgctccactctaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116535329_116536501
seq2: B6Ng01-102N09.b_42_1197 (reverse)

seq1  TGGACCATCAGTGCCAACCCGTCCTGTACCCTGGCTGAGGGGTGTGCTAA  50
      |||| |||||||||  ||||   |||||||   |||||||| || |||||
seq2  TGGA-CATCAGTGC--ACCCAGTCTGTACC--TGCTGAGGGTTG-GCTAA  44

seq1  GTGGCAGGCAAGTTTCAGCAGGATTTTTTCGTTTCTTCGCTAGGTTTGTA  100
        |||| |||||| |||||| ||||||||||||||||||||| | |||||
seq2  --GGCA-GCAAGTCTCAGCA-GATTTTTTCGTTTCTTCGCTAAGATTGTA  90

seq1  GCTCTCTTGTGACAGACAAGCGATTGTCACTGGTTGAGCTGAGGATGATT  150
      |||||  | |||||||||||||||||||||| | ||||||||| ||||||
seq2  GCTCTTCTTTGACAGACAAGCGATTGTCACT-GATGAGCTGAGAATGATT  139

seq1  TAAGTTATCCCTGTCTGAAATGACACTTTCTGAAGAGTCATGGTTTACTG  200
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TAAGTTAT-CCTGTCTGAAATGACAC-TTCTGAAGAGTCATGGTTTACTG  187

seq1  AGGCTCGACTTTTAAGACCTATTTTGAGAATGTCCACAGTAAGATTGCTT  250
      | ||||||||||| |||||||||||||| ||||||||||| |||||||||
seq2  A-GCTCGACTTTT-AGACCTATTTTGAG-ATGTCCACAGT-AGATTGCTT  233

seq1  CTGTTAGAGTGAGGTGTGTTGTCTTCGTTACTCAGATTCCCGGTTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGAGTGAGGTGTGTTGTCTTCGTTACTCAGATTCCCGGTTGGCTC  283

seq1  ATCGTAAGGCGTGGCACAAAATCACCATCGAAAGAAAGGGCCTTCGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTAAGGCGTGGCACAAAATCACCATCGAAAGAAAGGGCCTTCGGGAT  333

seq1  GCCTCTATCTGGTAAGAGCTTCACAGAATTGCAGGGGTTGTGGTTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTATCTGGTAAGAGCTTCACAGAATTGCAGGGGTTGTGGTTGCTGG  383

seq1  GAAGGGTTAGTCTGTTAGATCAGGTGCTGCAGAATCGAGTGTAACCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTTAGTCTGTTAGATCAGGTGCTGCAGAATCGAGTGTAACCCTTC  433

seq1  CTCCCTTTAGTCTTACTGTGTAGCCCGTGCTGGCCTGCAACTTGCTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTAGTCTTACTGTGTAGCCCGTGCTGGCCTGCAACTTGCTATGT  483

seq1  AGACCTGGTTGACCTCAAACTCAGTTTGTGGCCTTTCAGGTGCTGGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGTTGACCTCAAACTCAGTTTGTGGCCTTTCAGGTGCTGGGATT  533

seq1  TTCATGTTCTCATTTTGTGTTCCCGAAAAGCCCATAAGCCTATGATGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCTCATTTTGTGTTCCCGAAAAGCCCATAAGCCTATGATGGAT  583

seq1  TGGTTATCCCTGTCTGAAGATTTCAGCTGAGGGAAAATACTCTATTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATCCCTGTCTGAAGATTTCAGCTGAGGGAAAATACTCTATTCTGA  633

seq1  GGCTTAGGGGTGTGGCTCCATGCTTGAAGAAATTTGAGCTTTATAAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGGGGTGTGGCTCCATGCTTGAAGAAATTTGAGCTTTATAAGGGA  683

seq1  TCAAGTTAAATAGACTCCATAGAGAGCTGTGTGCCAACCTCCCAAAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTAAATAGACTCCATAGAGAGCTGTGTGCCAACCTCCCAAAACCT  733

seq1  AAGGTCTAGTTGCCTGTTAATCCTCCTCCTTGGGTGCTCTGAGGGCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTAGTTGCCTGTTAATCCTCCTCCTTGGGTGCTCTGAGGGCAAAG  783

seq1  TCCCTGAGTTAGCAGAAATGGGCGGGCTGCCAGCACCTGTCCTGTGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGTTAGCAGAAATGGGCGGGCTGCCAGCACCTGTCCTGTGCTCA  833

seq1  CTGGAGTGAGACATGCTGGTCACATAGTTCTAGAAAATGAATGTCTTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGAGACATGCTGGTCACATAGTTCTAGAAAATGAATGTCTTCCT  883

seq1  TTAGAGGAGGCAGGGATGTAAGGCGTGCCATGAGAATGCTTGACGACTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGAGGCAGGGATGTAAGGCGTGCCATGAGAATGCTTGACGACTCT  933

seq1  GTCGTTGCCTCTAGCGGTGCTGACATTTAGAAAAGAAGTTGTGGCCCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTGCCTCTAGCGGTGCTGACATTTAGAAAAGAAGTTGTGGCCCTGG  983

seq1  CAGCCTCCTAAGTATCGTCTCCTTGATGGCACAGAAACAAGTGGCGGGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCTAAGTATCGTCTCCTTGATGGCACAGAAACAAGTGGCGGGCT  1033

seq1  TGGGGGGGGGGGGGCTTTGCTCAGCCCAGCCTTAGTAATGCAGTGTACAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGGGGGGGCTTTGCTCAGCCCAGCCTTAGTAATGCAGTGTACAC  1083

seq1  TGTGTCCTTTTTCTCTATGGAATCTGGGGGGTGGATATGGGCTTACACTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTTTTTCTCTATGGAATCTGGGGGGTGGATATGGGCTTACACTA  1133

seq1  AAGTAGCTGTACTTGTGGAATTC  1173
      |||||||||||||||||||||||
seq2  AAGTAGCTGTACTTGTGGAATTC  1156

seq1: chr11_116435736_116436847
seq2: B6Ng01-102N09.g_66_1160

seq1  GAATTCCATGAGGCCCAATGTTGTGTAAAATAATAAAAGAGAAAGTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGGCCCAATGTTGTGTAAAATAATAAAAGAGAAAGTTCTT  50

seq1  GATCAAACAAAAATGAGAAAGGAAAAAGCAAGGCCATCAATGAAGCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAACAAAAATGAGAAAGGAAAAAGCAAGGCCATCAATGAAGCAGGG  100

seq1  AAGGCACGAAACACCTTGCATGTCCTGAAGCAGAAAACAGACCACAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACGAAACACCTTGCATGTCCTGAAGCAGAAAACAGACCACAGGCC  150

seq1  AGAGGGAGGAAGGGACTGAGGCAGAGCTCAGGCTTCCCAAGGAATCGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGAAGGGACTGAGGCAGAGCTCAGGCTTCCCAAGGAATCGCTC  200

seq1  TTGGCCCTGATTCATGAGTCAGCATTCCCAGCAGCAGGGGACAGCAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCTGATTCATGAGTCAGCATTCCCAGCAGCAGGGGACAGCAGGTC  250

seq1  AGGCTGGAGTCCCACTATTGACAGTTTTCAGGGATACAGAAGCCCTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGAGTCCCACTATTGACAGTTTTCAGGGATACAGAAGCCCTCTTG  300

seq1  CTTCTAGCAGTGGAAGGCGGCCCTTGGTAGGTCGGTGCTGGACTGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGCAGTGGAAGGCGGCCCTTGGTAGGTCGGTGCTGGACTGAGGCA  350

seq1  GGCTAGTGCTCTATTCACTCAACATTCTAGGCAATCAAAGGTTCCCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTGCTCTATTCACTCAACATTCTAGGCAATCAAAGGTTCCCCAGA  400

seq1  AATAGTGTTTTTGAACGCCAAGGTCAGTAACCGCATCTTGATCAGACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTTTTTGAACGCCAAGGTCAGTAACCGCATCTTGATCAGACAGT  450

seq1  TGCCATGAGCACAGAGTACAGCACTAAGTGCCTGGGGCACAACAACCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGAGCACAGAGTACAGCACTAAGTGCCTGGGGCACAACAACCGTG  500

seq1  ATGGGTTTGAGCTGTGATCCTAGGACAATGCATCATTCCGACCCTTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTTGAGCTGTGATCCTAGGACAATGCATCATTCCGACCCTTAGGA  550

seq1  TTCATCTATTACCTCTCTCTGGGAACTTCAAAAGAAGTCTTCCAGCCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTATTACCTCTCTCTGGGAACTTCAAAAGAAGTCTTCCAGCCACG  600

seq1  TGGTGAAGCGCACCTTTAATCATAGCTTTTGGGGAGGCAGAGGCCAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGCGCACCTTTAATCATAGCTTTTGGGGAGGCAGAGGCCAGTCT  650

seq1  GGTCTGCATGCTTACACAGATCTGAGTTTCAGGGTAGCCAGTACTACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCATGCTTACACAGATCTGAGTTTCAGGGTAGCCAGTACTACAGT  700

seq1  GAGACTATTAGCTCAAAAATAACCGTGGCTGCCGCCACTGCCAGTAATGA  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGACTATTAGCTCAGAAATAACCGTGGCTGCCGCCACTGCCAGTAATGA  750

seq1  CCATCTCCAGACCCGGGGAGCCACAGGGCCAGCTGAGTACCTATCTGTGT  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCATCTCCAGACCCGGGGAGCCACAGGGACAGCTGAGTACCTATCTGTGT  800

seq1  AGCCATCTGTTCTGCCTGCTCCTGGAGATGCTACATTAACTAGCGACTAC  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTGTTCTGCCTGCTCCTGGAGATGCTACATTAACTAGCGACTAC  850

seq1  TAAATTACTTACAAAGTCATGAGATCTCATGAGCACTGCTGGAAAAGGCT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAAATTACTTACAAAGTCATGAGATCTCATGAGCACTGCTGGAAAAAGCT  900

seq1  CCCAAGTCACACCTGTCACCACTACTCCCACCCTATGACATAGGAGTTAG  950
      | | | ||||| |||||||||||||||||  |||||||||||||||| | 
seq2  CTC-ACTCACAGCTGTCACCACTACTCCC-GCCTATGACATAGGAGTGA-  947

seq1  GAATTCCCATGTCACCAAAACAAGCTTTCCAAGGTGCCTCTTTGCTGTGG  1000
      |||||||| |||||| | |   |||||  | ||| ||||| |||||||||
seq2  GAATTCCC-TGTCACTACA--CAGCTT--CCAGGAGCCTC-TTGCTGTGG  991

seq1  CCCCACCATGAGACAGAAAAGGGATATTCTGAGCATCAGGACCAAGAGGC  1050
      |||  ||||||| |  |||||||||| ||||||||||| || || |||||
seq2  CCC--CCATGAGTC-CAAAAGGGATA-TCTGAGCATCA-GATCATGAGGC  1036

seq1  CATCCCAGGCACAAGTGGGACTGTCCTGCTGACCACTCTACCAGTGCAGG  1100
        | ||||||||||| ||| |||| |||||||||  ||| | ||| |  |
seq2  TCT-CCAGGCACAAGAGGGGCTGT-CTGCTGACCCTTCTGCAAGTCC--G  1082

seq1  CT-CACTCTAGGG  1112
      || ||||||||||
seq2  CTCCACTCTAGGG  1095