BAC Information

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BAC

Clone NameB6Ng01-103F16
Chromosome11 (Build37)
Map Location 21,426,634 - 21,554,223
singlet/doubletdoublet
Overlap geneMdh1, AV249152
Upstream geneSertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035, Peli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik
Downstream genePgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103F16.bB6Ng01-103F16.g
ACCDH911969DH911970
length1,2241,068
definitionDH911969|Mus musculus domesticus DNA, BAC clone: B6Ng01-103F16, 5' end.DH911970|Mus musculus domesticus DNA, BAC clone: B6Ng01-103F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,552,976 - 21,554,223)(21,426,634 - 21,427,712)
sequence
gaattccatacacaaatccgggcttagtggcctggctaagtgagactgaa
cgtaagtgagacaagggaatccacacaggaagacctgtttgagaaggacc
agggctggatgaggaagatgcccatgcagtaatcagatgatgcaatctgt
tagagcctcttcaggcacaaagcacacacactgggaataacagcctggtg
tggagaagagcaagacaaggaggtcatctaactcgtgctaggatcacatg
gcgtgagggtgccctcatagggagagtggacacaggaactcacagagagt
atctaagaaggactgactgggtaactacagttgtagaagcaacgagaaga
agcatctgcatatgaaacacaagaaaagtattttctgagacagtttttca
cttctaatgttaaagttttgtttcttgtgatatgcattcaattttaggag
atcagttcagcatttcttagaatctgtatttggattttgcttcgtgaatc
cagccctttccttagttttattttctttccctttcctacttcatctttgt
ttttccagaacccctttcacctgttttctttttattacttgtcctctttc
ccgtagaaacgttcaggtgtctgatgattccccagctctctcagaagcga
tgctctggacatctcctgacgccttccaacccggaacaggtttcactcag
taggcttcactgaccagccaggggccagagtgatttgcacaagaccacta
aaacatccgtgtagatgttttcttctgggaggtcgggcagtaaccgcagg
aaaggattctatttccaagctccttctttcttggcaaataaacaggtcag
aaagcatcctcggaatcgagggtgatgaagaagacctcaatcatcaacac
atcagcttcaattcctctgctttccgttcagcagtctttcctccagtggc
tttggtgtctagggtttggagcctccttattaagtatttccacatcatgg
aggtgtctcattcctttctgcaagcgtgcatccccttggctgtcagctgt
gcacatcttcatcttctgcatgcatactctcagttctgcacccttcaaag
tctcgtctatatgctgtcactggattctccttcctccaggccaaagggtt
ctgatgcaggggtcttttcttaatcagaatggcattatgaccttatataa
ttcagtattcttatttaaaagggt
gaattcatgggtgtgatggctctgtcatgtccaggagacatctcttgggt
acatagttcctgatccctctgtagtgaaaattttggcatttttggtttct
tttaaaaacagagaaatataatagtgtgttttaatcccaggtgtgggata
tgggtcttcttcagattttctaaagcagctgactgtgttttgtgtcatgc
tctaggaggtgtgtgatttttccagcagcagatagtttttgcagttttgt
gttgtttggaattctggggacttttgagaggatatacaaatgctaggtcc
ccaagaagcagggttgttgttggattgttgattattcgttatttcactgt
tgttcacagtttgaaaagtagttgtatgcaaagaggaaacaagaaaaagt
agaaacttagtgcagccctaatctatgggtagtttgctcacatcatcatt
tagcaaaggaataatagtaggttccccaaagagactatgtcttaccaagc
cttgatctcttgactagacttagagaaccaagcctgagttccctcatgtg
gaaaaggcctcaaatccaaccagtgtcatccaagcctccaaactggttgt
gcagccattgtactagagcatttattatggtttggagaactaataggtgc
ttggggctgttgattgatttttctcttccagcagcctgcttagcatgttc
tataactatgaggactagccagtaaggaagaagtttctagaagttcagcc
ccagcttgatttatctgtgtctgatgactaaaatgtgtggtgtcttcagc
aatgggagcttgccatccagttctggtttgcaaccagaggcaatggcaat
aggctgtattatttggaggcctccaggcctgcttggacaacaactcttat
tagggaatctcacatctgacaactgagattttcatttaataaaccaataa
acaggtttcttacatgaatatccctgggcctctgaaactcactatgagac
caagctgacttggactagagatcttcactctgctctgagtactgtgcact
acataccagaaaatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_21552976_21554223
seq2: B6Ng01-103F16.b_49_1272 (reverse)

seq1  ACCCTTTTAAAATAAGATTAACTGAATTAAAATAAAGATTCATAAATGCA  50
      |||||||| |||||||| | |||||||| | |||| |  ||||||   ||
seq2  ACCCTTTT-AAATAAGAAT-ACTGAATT-ATATAAGG--TCATAATGCCA  45

seq1  CTATACCTGAGATTAGGAAAAGGACACCTGCAATCAGACACCTTTTGCCT  100
       | |      ||||| ||||| ||| ||||| ||||||  ||||| ||||
seq2  TTCT------GATTAAGAAAA-GACCCCTGC-ATCAGAACCCTTTGGCCT  87

seq1  GGAG--AAGAGAATTCCAGTGACAGCCATTATAGACGAGAACTTTGGAAG  148
      ||||  | ||||| ||||||||||||   |||||||||| ||||| ||||
seq2  GGAGGAAGGAGAA-TCCAGTGACAGC--ATATAGACGAG-ACTTT-GAAG  132

seq1  GGTGCAGAAACTTGAGGAGTATGCATTGCAGAAGATGAGGATGTGGCACC  198
      |||||||||   ||| ||||||||| |||||||||||| ||||| |||| 
seq2  GGTGCAGAA--CTGA-GAGTATGCA-TGCAGAAGATGAAGATGT-GCAC-  176

seq1  AGGCTGACAGCCAAGGGGATGCACGCCTGCAGAAAGGAATGAGACACCTC  248
        |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -AGCTGACAGCCAAGGGGATGCACGCTTGCAGAAAGGAATGAGACACCTC  225

seq1  CATGATGTGGAAATACTTAATTAAGGAGGCTCCAAACCCTAGACACCAAA  298
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATGATGTGGAAATACTTAA-TAAGGAGGCTCCAAACCCTAGACACCAAA  274

seq1  GCCACTGGAGGAAGACCTGCTGAACGGAAAGCAGAGGAATTGAAGCTGAT  348
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  GCCACTGGAGGAAAGACTGCTGAACGGAAAGCAGAGGAATTGAAGCTGAT  324

seq1  GTGTTGATGATTGAGGTCTTCTTCATCACCCTCGATTCCGAGGATGCTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGATGATTGAGGTCTTCTTCATCACCCTCGATTCCGAGGATGCTTT  374

seq1  CTGACCTGTTTATTTGCCAAGAAAGAAGGAGCTTGGAAATAGAATCCTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGTTTATTTGCCAAGAAAGAAGGAGCTTGGAAATAGAATCCTTT  424

seq1  CCTGCGGTTACTGCCCGACCTCCCAGAAGAAAACATCTACACGGATGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGGTTACTGCCCGACCTCCCAGAAGAAAACATCTACACGGATGTTT  474

seq1  TAGTGGTCTTGTGCAAATCACTCTGGCCCCTGGCTGGTCAGTGAAGCCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTCTTGTGCAAATCACTCTGGCCCCTGGCTGGTCAGTGAAGCCTA  524

seq1  CTGAGTGAAACCTGTTCCGGGTTGGAAGGCGTCAGGAGATGTCCAGAGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGAAACCTGTTCCGGGTTGGAAGGCGTCAGGAGATGTCCAGAGCA  574

seq1  TCGCTTCTGAGAGAGCTGGGGAATCATCAGACACCTGAACGTTTCTACGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTCTGAGAGAGCTGGGGAATCATCAGACACCTGAACGTTTCTACGG  624

seq1  GAAAGAGGACAAGTAATAAAAAGAAAACAGGTGAAAGGGGTTCTGGAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGACAAGTAATAAAAAGAAAACAGGTGAAAGGGGTTCTGGAAAA  674

seq1  ACAAAGATGAAGTAGGAAAGGGAAAGAAAATAAAACTAAGGAAAGGGCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATGAAGTAGGAAAGGGAAAGAAAATAAAACTAAGGAAAGGGCTG  724

seq1  GATTCACGAAGCAAAATCCAAATACAGATTCTAAGAAATGCTGAACTGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACGAAGCAAAATCCAAATACAGATTCTAAGAAATGCTGAACTGAT  774

seq1  CTCCTAAAATTGAATGCATATCACAAGAAACAAAACTTTAACATTAGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAAATTGAATGCATATCACAAGAAACAAAACTTTAACATTAGAAG  824

seq1  TGAAAAACTGTCTCAGAAAATACTTTTCTTGTGTTTCATATGCAGATGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACTGTCTCAGAAAATACTTTTCTTGTGTTTCATATGCAGATGCT  874

seq1  TCTTCTCGTTGCTTCTACAACTGTAGTTACCCAGTCAGTCCTTCTTAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCGTTGCTTCTACAACTGTAGTTACCCAGTCAGTCCTTCTTAGAT  924

seq1  ACTCTCTGTGAGTTCCTGTGTCCACTCTCCCTATGAGGGCACCCTCACGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTGTGAGTTCCTGTGTCCACTCTCCCTATGAGGGCACCCTCACGC  974

seq1  CATGTGATCCTAGCACGAGTTAGATGACCTCCTTGTCTTGCTCTTCTCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATCCTAGCACGAGTTAGATGACCTCCTTGTCTTGCTCTTCTCCA  1024

seq1  CACCAGGCTGTTATTCCCAGTGTGTGTGCTTTGTGCCTGAAGAGGCTCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGCTGTTATTCCCAGTGTGTGTGCTTTGTGCCTGAAGAGGCTCTA  1074

seq1  ACAGATTGCATCATCTGATTACTGCATGGGCATCTTCCTCATCCAGCCCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGCATCATCTGATTACTGCATGGGCATCTTCCTCATCCAGCCCT  1124

seq1  GGTCCTTCTCAAACAGGTCTTCCTGTGTGGATTCCCTTGTCTCACTTACG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCTCAAACAGGTCTTCCTGTGTGGATTCCCTTGTCTCACTTACG  1174

seq1  TTCAGTCTCACTTAGCCAGGCCACTAAGCCCGGATTTGTGTATGGAATTC  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTCACTTAGCCAGGCCACTAAGCCCGGATTTGTGTATGGAATTC  1224

seq1: chr11_21426634_21427712
seq2: B6Ng01-103F16.g_72_1139

seq1  GAATTCATGGGTGTGATGGCTCTGTCATGTCCAGGAGACATCTCTTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGTGTGATGGCTCTGTCATGTCCAGGAGACATCTCTTGGGT  50

seq1  ACATAGTTCCTGATCCCTCTGTAGTGAAAATTTTGGCATTTTTGGTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTCCTGATCCCTCTGTAGTGAAAATTTTGGCATTTTTGGTTTCT  100

seq1  TTTAAAAACAGAGAAATATAATAGTGTGTTTTAATCCCAGGTGTGGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACAGAGAAATATAATAGTGTGTTTTAATCCCAGGTGTGGGATA  150

seq1  TGGGTCTTCTTCAGATTTTCTAAAGCAGCTGACTGTGTTTTGTGTCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTCTTCAGATTTTCTAAAGCAGCTGACTGTGTTTTGTGTCATGC  200

seq1  TCTAGGAGGTGTGTGATTTTTCCAGCAGCAGATAGTTTTTGCAGTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAGGTGTGTGATTTTTCCAGCAGCAGATAGTTTTTGCAGTTTTGT  250

seq1  GTTGTTTGGAATTCTGGGGACTTTTGAGAGGATATACAAATGCTAGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGGAATTCTGGGGACTTTTGAGAGGATATACAAATGCTAGGTCC  300

seq1  CCAAGAAGCAGGGTTGTTGTTGGATTGTTGATTATTCGTTATTTCACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGCAGGGTTGTTGTTGGATTGTTGATTATTCGTTATTTCACTGT  350

seq1  TGTTCACAGTTTGAAAAGTAGTTGTATGCAAAGAGGAAACAAGAAAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACAGTTTGAAAAGTAGTTGTATGCAAAGAGGAAACAAGAAAAAGT  400

seq1  AGAAACTTAGTGCAGCCCTAATCTATGGGTAGTTTGCTCACATCATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTAGTGCAGCCCTAATCTATGGGTAGTTTGCTCACATCATCATT  450

seq1  TAGCAAAGGAATAATAGTAGGTTCCCCAAAGAGACTATGTCTTACCAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGGAATAATAGTAGGTTCCCCAAAGAGACTATGTCTTACCAAGC  500

seq1  CTTGATCTCTTGACTAGACTTAGAGAACCAAGCCTGAGTTCCCTCATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTCTTGACTAGACTTAGAGAACCAAGCCTGAGTTCCCTCATGTG  550

seq1  GAAAAGGCCTCAAATCCAACCAGTGTCATCCAAGCCTCCAAACTGGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGCCTCAAATCCAACCAGTGTCATCCAAGCCTCCAAACTGGTTGT  600

seq1  GCAGCCATTGTACTAGAGCATTTATTATGGTTTGGAGAACTAATAGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCATTGTACTAGAGCATTTATTATGGTTTGGAGAACTAATAGGTGC  650

seq1  TTGGGGCTGTTGATTGATTTTTCTCTTCCAGCAGCCTGCTTAGCATGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTGTTGATTGATTTTTCTCTTCCAGCAGCCTGCTTAGCATGTTC  700

seq1  TATAACTATGAGGACTAGCCAGTAAGGAAGAAGTTTCTAGAAGTTCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTATGAGGACTAGCCAGTAAGGAAGAAGTTTCTAGAAGTTCAGCC  750

seq1  CCAGCTTGATTTATCTGTGTCTGATGACTAAAATGTGTGGTGTCTTCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGATTTATCTGTGTCTGATGACTAAAATGTGTGGTGTCTTCAGC  800

seq1  AATGGGAGCTTGCCATCCAGTTCTGGTTGGCAACCAGAGGCAATGGCAAT  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATGGGAGCTTGCCATCCAGTTCTGGTTTGCAACCAGAGGCAATGGCAAT  850

seq1  AGGCTGTATTATTTGGAGGCCTCCAGGGCCTGCTTGGACAACAACTCTTA  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGCTGTATTATTTGGAGGCCTCCA-GGCCTGCTTGGACAACAACTCTTA  899

seq1  -TAGGGAATCTCACATCTGAC-ACTGAGATTTTCATTTAATAAACCAATA  948
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAGGGAATCTCACATCTGACAACTGAGATTTTCATTTAATAAACCAATA  949

seq1  ACAGGGTTTCTTTACATGAATATCCCTGGGCCTCCTGAAACTCACTATGT  998
      |   |||||| |||||||||||||||||||||| ||||||||||||||| 
seq2  AACAGGTTTC-TTACATGAATATCCCTGGGCCT-CTGAAACTCACTATG-  996

seq1  AGACCAAGCTGACCTTGGACTTAGAGATCTTCCAACCTCTGCCTCCTGAG  1048
      |||||||||||| ||||||| |||||||||||    ||||||   |||||
seq2  AGACCAAGCTGA-CTTGGAC-TAGAGATCTTC---ACTCTGC--TCTGAG  1039

seq1  TACTGTGCACTACCATACCCAGAAAAGGTGT  1079
      |||||||||||| |||| |||||||| ||||
seq2  TACTGTGCACTA-CATA-CCAGAAAATGTGT  1068