BAC Information

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BAC

Clone NameB6Ng01-103L06
Chromosome11 (Build37)
Map Location 100,636,389 - 100,636,990
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc
Downstream geneStat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103L06.bB6Ng01-103L06.g
ACCDH912213DH912214
length1,099410
definitionDH912213|Mus musculus domesticus DNA, BAC clone: B6Ng01-103L06, 5' end.DH912214|Mus musculus domesticus DNA, BAC clone: B6Ng01-103L06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcggtcaggcgcaatactgtaagtagtggaaacatcattctat
cagtccaggcggttttgtcagaagcagggaagacaaatccataaccagag
caagtatctactccagtaaggacaaagcattgtcccttccacagaggaag
tggtccaataaagtcaacctgccgccaggtcactggttggtcaccctgag
aaatggtaccatatctgtggctaggtgttggtctccgttgttgactcagc
agcagctgtagccaggtcagctgtggtttggagaagcccatgctgttgag
cccatgcattacctccatctctgccaccatgggcactttgttcctgggcc
cattgggcaatgacaggaatggctggggaaagaagttgactgcccatgga
atggacagaataatccaaccgagaccactgaactcttcctcagctgacgt
catcttctgatgatcatttatgtggacacaaatcttctcatgcaatattt
ttacaccctttgcccatttggagagatctagccacatacttcttctccag
atgtctttctcaacaattttctaatcctgctcctcccaagtccctgagca
tccagccactctagtctctgccacccatggatctgtgaacaatagcacat
ctggccacttctccttccaaacaaaatgtatgaccatgagtgatagctga
agttctacccactgtggagatttccttttgttggtgtcttaagggttgtc
tcaggaagaggctgtaatgatgaagctccccactaataacacgcagaacc
atcagtaaatcaggccctagtcttttctttcctagtcagtgggatcagag
ggtactcctcatgaggctataagtgcaaacttggcaccattgtgatgaga
gtagaaacataggcgtttgcacaacatcatttaacttgcgtgtggccgcc
agggacatatataccacttccattttgatattcagattgctggctgttgc
atgtccttactttatgacttggtgggtcagatatactagctcatgatggt
ctgcttcaggttctcacggtcaccttggtggacccattgtcaagtgttc
ttgcaaagcagggggttcgactacaggtggctgagagccacccaacgtga
gtgcctcgcatcacttcaactttttttttttttttttgagacagggtctt
tggcctagaattcactacacagaacctcaaactcagagatccacttgcat
ctatctcccaagccccggggtaaaaggctgcgccactgcgacctgctgtc
attcatgcttttatttattatatgtatatgagtacactgtagttgtcttt
aaaaaaaaattatttcatgtatttgagtacactgtcctctgaagacccac
cagaagagggcatcagatcccattatagatggttgggagcctccatgtgg
ttgctgggtattgaacataggacctcttgaagaacagcctgtgctcttaa
ccgctgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100636389_100636990
seq2: B6Ng01-103L06.g_190_484

seq1  CTACACAGAACCCGTCTTAAAGAAACAACACAAAATATATATTTATACGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTGACACAGCATGAGTGGAAATCAGAGACAACCTGTGGGTATCAGGTCTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCATTCTGCATGTTGTTGTTTCTGAGACATGTCCGGGAACTCTCCCTGTA  150
                                                   ||  |
seq2  ---------------------------------------------CTACA  5

seq1  GTCCAGGCTGGCTTCAAACTCAGAGAGCCACCTGCCTCTGACTCTTGAGG  200
         |||     | ||||||||||||| |||| ||| |||  |||   || 
seq2  ---CAG---AACCTCAAACTCAGAGATCCACTTGCATCTATCTCCCAAGC  49

seq1  GCTGGGCTTAAAGTTATGCGCCACCACCCAGCTCCACTTCTCTCTCTCTC  250
       | ||| | ||||   |||||||     | ||  | || || ||  ||  
seq2  CCCGGGGTAAAAG-GCTGCGCCA-----CTGCGAC-CTGCTGTCATTCAT  92

seq1  TCTCTCTCTCAAGATTTATTTATTTTATGTATATGAGTACACTGTTGCTG  300
       ||           |||||||||| |||||||||||||||||||| | ||
seq2  GCT-----------TTTATTTATTATATGTATATGAGTACACTGTAGTTG  131

seq1  TACAGATGGTTGTGAGCCACCATCATGTGGTTGCTAAGAACTGAACTCAG  350
      |                                                 
seq2  T-------------------------------------------------  132

seq1  AACCTCTGCTTGCTCCGGCCCCGCTCTCTCCAGTTGGCCTCCACTTGCTC  400
                                                 |||    
seq2  -------------------------------------------CTT----  135

seq1  CGGTCAACCCTGCTTGCTCAGTCTCTGCTCTCTCTGGCCCAAAGATTTAT  450
         | ||                                 ||| | ||||
seq2  ---TAAA---------------------------------AAAAAATTAT  149

seq1  TTATTATTATATGTAAGCACACTGTAGCTGTCTTCAGACACCCCAGAAGA  500
         ||  | ||| | || |||||||     |||  |||| | ||||||||
seq2  ---TTCATGTATTTGAGTACACTGT---CCTCTGAAGACCCACCAGAAGA  193

seq1  GAGTGTCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTGGCTGG  550
      | |  ||||||| |||||  |||||||| ||||| ||||||||| |||||
seq2  GGGCATCAGATCCCATTATAGATGGTTGGGAGCCTCCATGTGGTTGCTGG  243

seq1  GATTTGAACTCAGGACCTTTAGAAGAGCAGTCAGTGCTCTTAACTGCTGA  600
      |  ||||||  ||||||| | ||||| ||| | ||||||||||| |||||
seq2  GTATTGAACATAGGACCTCTTGAAGAACAGCCTGTGCTCTTAACCGCTGA  293

seq1  GC  602
      ||
seq2  GC  295