BAC Information

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BAC

Clone NameB6Ng01-103O21
Chromosome11 (Build37)
Map Location 87,953,042 - 88,067,283
singlet/doubletdoublet
Overlap geneCuedc1, Mrps23
Upstream geneTrim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1
Downstream gene1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103O21.bB6Ng01-103O21.g
ACCDH912374DH912375
length4721,114
definitionDH912374|Mus musculus domesticus DNA, BAC clone: B6Ng01-103O21, 5' end.DH912375|Mus musculus domesticus DNA, BAC clone: B6Ng01-103O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,066,806 - 88,067,283)(87,953,042 - 87,954,120)
sequence
ctccttccaaacagtaaggagcctgcacattcccggatccagcaccctgc
agggctgaggcagagggatctcactcaagcctagcctgggcttcatagtg
aggtcctgtctcaactaggcaaacaaaagcaacagaaagaaaagaaggag
tcaaagaatctgcagggcagaaggattgccaggcccctctatggctgact
cgccccggctggtaacacattatcaagccagttcagaggagccactgttc
tcaaatcaagaattaggtttatgtctgggtctactccagaacactggctg
ctccctgcctaaccatagccgcctctggaagtcccaggttgtagttcact
ccagggacgaagcatggggacatgccaacaggacacagggcacagtctga
tgcagctgagtcagttctggatgctttagagaggcacggggtaggggggt
ggggtcgcagggggcggggggg
gaattcatcacagcaactgtggtggcctggggagccaggcagggattagt
cctctagtcaagcatccccacaaccacagcgtggctgctgccgggtccac
agtctccctttcgcctcctgagaccatcgggatgccgcgactcataaatg
ccctcgtcccagcccccaggttctctattctcaggggcagctgctggcca
cctggggcgggatcctgagtagagatcagcttgctcagcttctttggtgt
gaccttggaggcaaggcctttgacctttctagacctttgaggctaagaga
ttggagaagcttagaatgggggagaaagtcaggcttttggtagcaggact
gcatttgccctaaagaaaaccacatctgggtatgcagtttttgtcttctg
tcctagggccaatagtaaatttacgtttggttcaaaccagtgacattcaa
aaaacggcagcccatctccaaggagcaacttgataaaaatctatccccca
cccccccatccctcccccactcccgatccacagcacctccccttccctct
gctggtccagggtcttccctgctggtgacaacctgtcagaggccttctgt
tccaggccaaagctcaatgcttttggatactcagggtctgcttttgtgtc
ctgaggatcctccagtgtttcaggcaggaagggaggggctcctgaggaga
gctgtgagcttttctgcttgagcggctggctttgcctgtcctctctgtgt
gggtgtgctgcacaccactcactatcccaacaggtgcactagtaggctct
gctttttagtaggaaatcaagtgcaaattttcagtgcagccctgggtggt
ggattaaaatcagcaaaacccttgccttattttattggaaaaaaaaaaaa
agactttcccttcttaatatctaaccctctcggaccatctgctttgttaa
gattaagcaaaaagatggcacgtggactcgggtttttacaatggttcaaa
gccttccctttggaagactgggaggtgggtgtcaccaatgcctgtaagag
acctctaatgggggttcttgtgggtaaagaattaaagtttatcgtggcgt
gccaaggtgccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88066806_88067283
seq2: B6Ng01-103O21.b_45_522 (reverse)

seq1  CCCCCCCGCCCCCTGCGACCCCACCCCCCTACCCCGTGCCTCTCTAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCGCCCCCTGCGACCCCACCCCCCTACCCCGTGCCTCTCTAAAGC  50

seq1  ATCCAGAACTGACTCAGCTGCATCAGACTGTGCCCTGTGTCCTGTTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAACTGACTCAGCTGCATCAGACTGTGCCCTGTGTCCTGTTGGCA  100

seq1  TGTCCCCATGCTTCGTCCCTGGAGTGAACTACAACCTGGGACTTCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCATGCTTCGTCCCTGGAGTGAACTACAACCTGGGACTTCCAGAG  150

seq1  GCGGCTATGGTTAGGCAGGGAGCAGCCAGTGTTCTGGAGTAGACCCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTATGGTTAGGCAGGGAGCAGCCAGTGTTCTGGAGTAGACCCAGAC  200

seq1  ATAAACCTAATTCTTGATTTGAGAACAGTGGCTCCTCTGAACTGGCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTAATTCTTGATTTGAGAACAGTGGCTCCTCTGAACTGGCTTGA  250

seq1  TAATGTGTTACCAGCCGGGGCGAGTCAGCCATAGAGGGGCCTGGCAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTTACCAGCCGGGGCGAGTCAGCCATAGAGGGGCCTGGCAATCC  300

seq1  TTCTGCCCTGCAGATTCTTTGACTCCTTCTTTTCTTTCTGTTGCTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCTGCAGATTCTTTGACTCCTTCTTTTCTTTCTGTTGCTTTTGT  350

seq1  TTGCCTAGTTGAGACAGGACCTCACTATGAAGCCCAGGCTAGGCTTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAGTTGAGACAGGACCTCACTATGAAGCCCAGGCTAGGCTTGAGT  400

seq1  GAGATCCCTCTGCCTCAGCCCTGCAGGGTGCTGGATCCGGGAATGTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCCTCTGCCTCAGCCCTGCAGGGTGCTGGATCCGGGAATGTGCAG  450

seq1  GCTCCTTACTGTTTGGAAGGAGGAATTC  478
      ||||||||||||||||||||||||||||
seq2  GCTCCTTACTGTTTGGAAGGAGGAATTC  478

seq1: chr11_87953042_87954120
seq2: B6Ng01-103O21.g_68_1181

seq1  GAATTCATCACAGCAACTGTGGTGGCCTGGGGAGCCAGGCAGGGATTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACAGCAACTGTGGTGGCCTGGGGAGCCAGGCAGGGATTAGT  50

seq1  CCTCTAGTCAAGCATCCCCACAACCACAGCGTGGCTGCTGCCGGGTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGTCAAGCATCCCCACAACCACAGCGTGGCTGCTGCCGGGTCCAC  100

seq1  AGTCTCCCTTTCGCCTCCTGAGACCATCGGGATGCCGCGACTCATAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCTTTCGCCTCCTGAGACCATCGGGATGCCGCGACTCATAAATG  150

seq1  CCCTCGTCCCAGCCCCCAGGTTCTCTATTCTCAGGGGCAGCTGCTGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGTCCCAGCCCCCAGGTTCTCTATTCTCAGGGGCAGCTGCTGGCCA  200

seq1  CCTGGGGCGGGATCCTGAGTAGAGATCAGCTTGCTCAGCTTCTTTGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCGGGATCCTGAGTAGAGATCAGCTTGCTCAGCTTCTTTGGTGT  250

seq1  GACCTTGGAGGCAAGGCCTTTGACCTTTCTAGACCTTTGAGGCTAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGAGGCAAGGCCTTTGACCTTTCTAGACCTTTGAGGCTAAGAGA  300

seq1  TTGGAGAAGCTTAGAATGGGGGAGAAAGTCAGGCTTTTGGTAGCAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAGCTTAGAATGGGGGAGAAAGTCAGGCTTTTGGTAGCAGGACT  350

seq1  GCATTTGCCCTAAAGAAAACCACATCTGGGTATGCAGTTTTTGTCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCCCTAAAGAAAACCACATCTGGGTATGCAGTTTTTGTCTTCTG  400

seq1  TCCTAGGGCCAATAGTAAATTTACGTTTGGTTCAAACCAGTGACATTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGGCCAATAGTAAATTTACGTTTGGTTCAAACCAGTGACATTCAA  450

seq1  AAAACGGCAGCCCATCTCCAAGGAGCAACTTGATAAAAATCTATCCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGCAGCCCATCTCCAAGGAGCAACTTGATAAAAATCTATCCCCCA  500

seq1  CCCCCCCATCCCTCCCCCACTCCCGATCCACAGCACCTCCCCTTCCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCATCCCTCCCCCACTCCCGATCCACAGCACCTCCCCTTCCCTCT  550

seq1  GCTGGTCCAGGGTCTTCCCTGCTGGTGACAACCTGTCAGAGGCCTTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCCAGGGTCTTCCCTGCTGGTGACAACCTGTCAGAGGCCTTCTGT  600

seq1  TCCAGGCCAAAGCTCAATGCTTTTGGATACTCAGGGTCTGC-TTTGTGTC  649
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCAGGCCAAAGCTCAATGCTTTTGGATACTCAGGGTCTGCTTTTGTGTC  650

seq1  CTGAGGATCCTCCAGTGTTTCAGGCAGGAAGGGAGGGGCTCCTGAGGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATCCTCCAGTGTTTCAGGCAGGAAGGGAGGGGCTCCTGAGGAGA  700

seq1  GCTGTGAGC-TTTCTGCTTGAGCGGCTGGC-TTGCCTGTCCTCTCTGTGT  747
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  GCTGTGAGCTTTTCTGCTTGAGCGGCTGGCTTTGCCTGTCCTCTCTGTGT  750

seq1  GGGTGTGCTGCACACCACTCACTAT-CCAACAGGTGCACTAGTAGGCTCT  796
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGTGTGCTGCACACCACTCACTATCCCAACAGGTGCACTAGTAGGCTCT  800

seq1  GC-TTTTAGTAGGAAATCAGGTGCAAA-TTTCAGTGCAGCCCT-GGTGGT  843
      || |||||||||||||||| ||||||| ||||||||||||||| ||||||
seq2  GCTTTTTAGTAGGAAATCAAGTGCAAATTTTCAGTGCAGCCCTGGGTGGT  850

seq1  -GATT-AAATCAGCAAA--CCCTGCCTTA-TTTATT-GAAAAAAAAAAAA  887
       |||| |||||||||||  || ||||||| |||||| |||||||||||||
seq2  GGATTAAAATCAGCAAAACCCTTGCCTTATTTTATTGGAAAAAAAAAAAA  900

seq1  AGACTT--CCTTC-TAATATCTAA-CCTCTCGGACCATCTGC-TTGTTAA  932
      ||||||  ||||| |||||||||| ||||||||||||||||| |||||||
seq2  AGACTTTCCCTTCTTAATATCTAACCCTCTCGGACCATCTGCTTTGTTAA  950

seq1  GATT-AGC-AAAAGAT-GCACGTGACCTCGGG-TTTTAC-ATTGTTCAAA  977
      |||| ||| ||||||| |||||||  |||||| |||||| || |||||||
seq2  GATTAAGCAAAAAGATGGCACGTGGACTCGGGTTTTTACAATGGTTCAAA  1000

seq1  AGCCTCCCTT---GAGACT-GGAGGTGGG-GCCA-CATTGCCTG-AAGAG  1020
        | ||||||    ||||| ||||||||| | || || |||||| |||||
seq2  GCCTTCCCTTTGGAAGACTGGGAGGTGGGTGTCACCAATGCCTGTAAGAG  1050

seq1  ACCTCTAAATGGGGT--CTGT-GGTAAAGA--TTAAGTTATCCGTTGCGT  1065
      ||||||||  |||||   ||| ||||||||  | |||||   ||| ||||
seq2  ACCTCTAATGGGGGTTCTTGTGGGTAAAGAATTAAAGTTTATCGTGGCGT  1100

seq1  GCCAAGTGGCCACT  1079
      ||||||  ||||||
seq2  GCCAAGGTGCCACT  1114