BAC Information

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BAC

Clone NameB6Ng01-104M02
Chromosome11 (Build37)
Map Location 108,785,999 - 108,930,100
singlet/doubletdoublet
Overlap geneAxin2
Upstream genePrkca, Apoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945
Downstream geneE030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104M02.bB6Ng01-104M02.g
ACCDH912960DH912961
length1,101421
definitionDH912960|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M02, 5' end.DH912961|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,928,993 - 108,930,100)(108,785,999 - 108,786,419)
sequence
gaattccaaacactcactgtaatctctccaccccgatagtctgtgtagga
atctgataaaacaaaaactcaatcactcccaccaacaatgcggctggctg
cgccatccatccaggataacacatcaaagcaccaaggacagagtcataaa
caccagactttaaaacccctgggagctttaattccccccatccccacccc
accccgcccgttaggaacgtgtgcaggccaagtgcggtttgcagactctg
ggatgactttcaggacaagtctcattactttctgagaaagccggcctggg
aaaagttcaaggggaaacaagcttgtcagagtcaatttttaaaagcttgc
ttctcactgggattcagcgtgtttttttgtttttttgttttcccctgcct
tttaacttaagttcctgctagaggggaggcagcctggctcaggggcaagt
gtataagacttggggtcccaggcagcttcctgttaacactactttacatt
catttactcatccagtgctcaaggactgagtttctttccacgtaaacaca
gagagacacccaggagagttcaaggcagaactctgttctacatgaataga
atacgccacccctcaaagttttgagggctttgattgctctattaccatgt
caggttcattggcaactcaaagagggttctggaaaacttggattgatctg
gacctcagtccagctctgtcatttattagttttgggagccctggttccct
cttttgcttcgagagtgggaaaaaacggctcagtgggtggagcatctgct
gctaaagacttgaatttttgatcctcagaacctggataaagccagataca
gatccatctggaatgccagcgcttcttgcaggaagatggcagatggagac
aggagaattccctgcgagctcgtgagttacccgaccttggagctgaagca
gaaaccctgtctctagatggcagacaaagctgactctcaggatgtcctga
cttcactcctgagtcgtgctctataggcacatgcatgacacacatacgaa
agttttttttaagaagaaagtcttttaaactctgtttaagtttatttatt
t
gtatttcccaggaaggaaggaagccttctgactaacttggggaaggccct
gagactttctcctatgaaggagcccacactttggagtctgctgggctatt
aatccagctttcaaatgcatttgagcccccagggtcagacatcagttgat
ggtttgttgcttagtgctgatagagaagtgtgtgtgtgtaggggaggggg
aacctggccgtccagaccactttctcttttcaaagattctaaaacaaaca
gcccattatagattgactaagtctcaagatacttggtccttgcaggcaac
ttcagacctgttagaatgcatttccctgccctttgcttctggcgatccca
gaagaggatgcacctattataattttagtctgttgcctgtgacatgcagg
acgggaggtgtgtgtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_108928993_108930100
seq2: B6Ng01-104M02.b_46_1146 (reverse)

seq1  AAATAAATAAACCTTAAAAACAGAGTTTTAAAAGAACCTTTCTCTTTAAA  50
      |||||||||||| |   |||||||| |||||||||  ||||||  |||||
seq2  AAATAAATAAACTT---AAACAGAG-TTTAAAAGA--CTTTCTTCTTAAA  44

seq1  AAAAACTTTCTGTATGTGTGTCATGCATGTGCCTAT-GAGCCACGACTCA  99
      |||||||||| ||||||||||||||||||||||||| ||| |||||||||
seq2  AAAAACTTTC-GTATGTGTGTCATGCATGTGCCTATAGAG-CACGACTCA  92

seq1  GGAGTGGAAGTCAGGGACATCCCTGAGAGTCAGCTTTTGTCTGCCATCTA  149
      ||||| ||||||| |||||| ||||||||||||| |||||||||||||||
seq2  GGAGT-GAAGTCA-GGACAT-CCTGAGAGTCAGC-TTTGTCTGCCATCTA  138

seq1  GAGACAGGGTCTCTGCTTCAGCTCC-AGGTCGGGTAACTCACGAGCTCGC  198
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTGCTTCAGCTCCAAGGTCGGGTAACTCACGAGCTCGC  188

seq1  AGGG-ATTCTCCTGTCTCCATCTGCCATCTTCCTGC-AGAAGCGCTGGCA  246
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGGAATTCTCCTGTCTCCATCTGCCATCTTCCTGCAAGAAGCGCTGGCA  238

seq1  TTCCAGATGGATCTGTATCTGGCTTTATCCAGGTTCTGAGGATC-AAAAT  295
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCCAGATGGATCTGTATCTGGCTTTATCCAGGTTCTGAGGATCAAAAAT  288

seq1  TCAAGTCTTTAGCAGCAGATGCTCCACCCACTGAGCCGTTTTTTCCCACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTTTAGCAGCAGATGCTCCACCCACTGAGCCGTTTTTTCCCACT  338

seq1  CTCGAAGCAAAAGAGGGAACCAGGGCTCCCAAAACTAATAAATGACAGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGCAAAAGAGGGAACCAGGGCTCCCAAAACTAATAAATGACAGAG  388

seq1  CTGGACTGAGGTCCAGATCAATCCAAGTTTTCCAGAACCCTCTTTGAGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGAGGTCCAGATCAATCCAAGTTTTCCAGAACCCTCTTTGAGTT  438

seq1  GCCAATGAACCTGACATGGTAATAGAGCAATCAAAGCCCTCAAAACTTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGAACCTGACATGGTAATAGAGCAATCAAAGCCCTCAAAACTTTG  488

seq1  AGGGGTGGCGTATTCTATTCATGTAGAACAGAGTTCTGCCTTGAACTCTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGCGTATTCTATTCATGTAGAACAGAGTTCTGCCTTGAACTCTC  538

seq1  CTGGGTGTCTCTCTGTGTTTACGTGGAAAGAAACTCAGTCCTTGAGCACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTCTCTCTGTGTTTACGTGGAAAGAAACTCAGTCCTTGAGCACT  588

seq1  GGATGAGTAAATGAATGTAAAGTAGTGTTAACAGGAAGCTGCCTGGGACC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGTAAATGAATGTAAAGTAGTGTTAACAGGAAGCTGCCTGGGACC  638

seq1  CCAAGTCTTATACACTTGCCCCTGAGCCAGGCTGCCTCCCCTCTAGCAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTTATACACTTGCCCCTGAGCCAGGCTGCCTCCCCTCTAGCAGG  688

seq1  AACTTAAGTTAAAAGGCAGGGGAAAACAAAAAAACAAAAAAACACGCTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAGTTAAAAGGCAGGGGAAAACAAAAAAACAAAAAAACACGCTGA  738

seq1  ATCCCAGTGAGAAGCAAGCTTTTAAAAATTGACTCTGACAAGCTTGTTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGTGAGAAGCAAGCTTTTAAAAATTGACTCTGACAAGCTTGTTTC  788

seq1  CCCTTGAACTTTTCCCAGGCCGGCTTTCTCAGAAAGTAATGAGACTTGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAACTTTTCCCAGGCCGGCTTTCTCAGAAAGTAATGAGACTTGTC  838

seq1  CTGAAAGTCATCCCAGAGTCTGCAAACCGCACTTGGCCTGCACACGTTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTCATCCCAGAGTCTGCAAACCGCACTTGGCCTGCACACGTTCC  888

seq1  TAACGGGCGGGGTGGGGTGGGGATGGGGGGAATTAAAGCTCCCAGGGGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGGCGGGGTGGGGTGGGGATGGGGGGAATTAAAGCTCCCAGGGGTT  938

seq1  TTAAAGTCTGGTGTTTATGACTCTGTCCTTGGTGCTTTGATGTGTTATCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCTGGTGTTTATGACTCTGTCCTTGGTGCTTTGATGTGTTATCC  988

seq1  TGGATGGATGGCGCAGCCAGCCGCATTGTTGGTGGGAGTGATTGAGTTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGATGGCGCAGCCAGCCGCATTGTTGGTGGGAGTGATTGAGTTTT  1038

seq1  TGTTTTATCAGATTCCTACACAGACTATCGGGGTGGAGAGATTACAGTGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATCAGATTCCTACACAGACTATCGGGGTGGAGAGATTACAGTGA  1088

seq1  GTGTTTGGAATTC  1108
      |||||||||||||
seq2  GTGTTTGGAATTC  1101

seq1: chr11_108785999_108786419
seq2: B6Ng01-104M02.g_75_495

seq1  GTATTTCCCAGGAAGGAAGGAAGCCTTCTGACTAACTTGGGGAAGGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCCAGGAAGGAAGGAAGCCTTCTGACTAACTTGGGGAAGGCCCT  50

seq1  GAGACTTTCTCCTATGAAGGAGCCCACACTTTGGAGTCTGCTGGGCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTCTCCTATGAAGGAGCCCACACTTTGGAGTCTGCTGGGCTATT  100

seq1  AATCCAGCTTTCAAATGCATTTGAGCCCCCAGGGTCAGACATCAGTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCTTTCAAATGCATTTGAGCCCCCAGGGTCAGACATCAGTTGAT  150

seq1  GGTTTGTTGCTTAGTGCTGATAGAGAAGTGTGTGTGTGTAGGGGAGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTGCTTAGTGCTGATAGAGAAGTGTGTGTGTGTAGGGGAGGGGG  200

seq1  AACCTGGCCGTCCAGACCACTTTCTCTTTTCAAAGATTCTAAAACAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGCCGTCCAGACCACTTTCTCTTTTCAAAGATTCTAAAACAAACA  250

seq1  GCCCATTATAGATTGACTAAGTCTCAAGATACTTGGTCCTTGCAGGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTATAGATTGACTAAGTCTCAAGATACTTGGTCCTTGCAGGCAAC  300

seq1  TTCAGACCTGTTAGAATGCATTTCCCTGCCCTTTGCTTCTGGCGATCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACCTGTTAGAATGCATTTCCCTGCCCTTTGCTTCTGGCGATCCCA  350

seq1  GAAGAGGATGCACCTATTATAATTTTAGTCTGTTGCCTGTGACATGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGATGCACCTATTATAATTTTAGTCTGTTGCCTGTGACATGCAGG  400

seq1  ACGGGAGGTGTGTGTGGGGGG  421
      |||||||||||||||||||||
seq2  ACGGGAGGTGTGTGTGGGGGG  421