BAC Information

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BAC

Clone NameB6Ng01-105I19
Chromosome11 (Build37)
Map Location 72,722,413 - 72,857,727
singlet/doubletdoublet
Overlap geneZzef1, Atp2a3, P2rx1, LOC100043309, Camkk1
Upstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, LOC627119
Downstream gene1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105I19.bB6Ng01-105I19.g
ACCDH913542DH913543
length1,079445
definitionDH913542|Mus musculus domesticus DNA, BAC clone: B6Ng01-105I19, 5' end.DH913543|Mus musculus domesticus DNA, BAC clone: B6Ng01-105I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,722,413 - 72,723,499)(72,857,277 - 72,857,727)
sequence
gaattcttgaagttcccagaggctttcaaggtcaagtactagcatctagt
ataagggaagctgtgctaccagggtgtgctgtgtccctcaccctcacttc
cacaggtgcctgcatttgaagaatcacctctgggttcgcttacatccaag
ggacatatgctaaaacatattaataggtaaccgggatcttagagaacctt
ttttaaattttatttttattttatatgtatgggtgttttgcctgcaaaca
tgtctgcaccacttgaatgcctggtgccccatagatgccagaagaggaca
tcagttgccctggacttcagttacagatggttgtgagctgccatgtgggt
tcttggaagtgaactcaagtcctctggaaaagcatccaatgctcttctta
actgctgagctgtatctgcagctcctataaacaccctttttagtggctat
gtataagactagaaagtgctttgcaggtttttgccattattaatgcttca
ttggctgtattttaaacagcatttttcatgtattttgtcatttctaaaag
ataagttagtaggtcaaaaggatataaactttttttttttttggtttttc
gagacagggtttctctgtatagccctggctgtcctggaactcactctgta
gaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccgagt
gctgggattaaaggcgtgcgccaccatgcccggcaacattttttaaagaa
gtatttttttatgtctatgagtacactgtggctgtcttcagacactccag
aagagagcatcagatcccattacagatgggttgtgaaccaccatgtggtt
gctgggatgaacttgggacctctaggaagagcagtcagtgctcttaacta
ctgagccatctctccagccccaatatatcattttaaattacttatagtta
cattttctccaaacaagttagaaaagataatacccatttggggctatcag
aaagttaataacccaagggcttcataagtttgttagcatttcctgtatgt
agtaaatgaacatgctttcttgctcttta
aatagcactgacacctcagaggcctagtgcagccggactgccacttgctg
taccaatacttgctgtaccgatcacatcttcaatagacacccaggaccca
gcaccacctacccccagctccccacggggggagggggggaatactgtcta
tttacatttgagaaggtgaagtctgtctgagtgtgatctcctgtgtatag
tggaggtcacactgtaacctgagatacatatcccctgggaaatctgaaac
cctcagaagttcccatcccccacccccacccctgagccaccatatagact
aagagattgaggaaacagagacctggaaacaggtctgtaggattcacagc
ctgtaaacatcttctcatatgcaccaaggttcccctttgcatgttccact
gcctcccaaacctttaatcagacccactgttgttagggctcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72722413_72723499
seq2: B6Ng01-105I19.b_45_1123

seq1  GAATTCTTGAAGTTCCCAGAGGCTTTCAAGGTCAAGTACTAGCATCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAGTTCCCAGAGGCTTTCAAGGTCAAGTACTAGCATCTAGT  50

seq1  ATAAGGGAAGCTGTGCTACCAGGGTGTGCTGTGTCCCTCACCCTCACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGAAGCTGTGCTACCAGGGTGTGCTGTGTCCCTCACCCTCACTTC  100

seq1  CACAGGTGCCTGCATTTGAAGAATCACCTCTGGGTTCGCTTACATCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGCCTGCATTTGAAGAATCACCTCTGGGTTCGCTTACATCCAAG  150

seq1  GGACATATGCTAAAACATATTAATAGGTAACCGGGATCTTAGAGAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATATGCTAAAACATATTAATAGGTAACCGGGATCTTAGAGAACCTT  200

seq1  TTTTAAATTTTATTTTTATTTTATATGTATGGGTGTTTTGCCTGCAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTTTATTTTTATTTTATATGTATGGGTGTTTTGCCTGCAAACA  250

seq1  TGTCTGCACCACTTGAATGCCTGGTGCCCCATAGATGCCAGAAGAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCACCACTTGAATGCCTGGTGCCCCATAGATGCCAGAAGAGGACA  300

seq1  TCAGTTGCCCTGGACTTCAGTTACAGATGGTTGTGAGCTGCCATGTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGCCCTGGACTTCAGTTACAGATGGTTGTGAGCTGCCATGTGGGT  350

seq1  TCTTGGAAGTGAACTCAAGTCCTCTGGAAAAGCATCCAATGCTCTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAGTGAACTCAAGTCCTCTGGAAAAGCATCCAATGCTCTTCTTA  400

seq1  ACTGCTGAGCTGTATCTGCAGCTCCTATAAACACCCTTTTTAGTGGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGCTGTATCTGCAGCTCCTATAAACACCCTTTTTAGTGGCTAT  450

seq1  GTATAAGACTAGAAAGTGCTTTGCAGGTTTTTGCCATTATTAATGCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGACTAGAAAGTGCTTTGCAGGTTTTTGCCATTATTAATGCTTCA  500

seq1  TTGGCTGTATTTTAAACAGCATTTTTCATGTATTTTGTCATTTCTAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTATTTTAAACAGCATTTTTCATGTATTTTGTCATTTCTAAAAG  550

seq1  ATAAGTTAGTAGGTCAAAAGGATATAAACTTTTTTTTTTTTTGGTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTAGTAGGTCAAAAGGATATAAACTTTTTTTTTTTTTGGTTTTTC  600

seq1  GAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTA  650

seq1  GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGT  700

seq1  GCTGGGATTAAAGGCGTGCGCCACCATGCCCGGCAACATTTTTTAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGCGTGCGCCACCATGCCCGGCAACATTTTTTAAAGAA  750

seq1  GTATTTTTTTATGTCTATGAGTACACTGTGGCTGTCTTCAGACACTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTTATGTCTATGAGTACACTGTGGCTGTCTTCAGACACTCCAG  800

seq1  AAGAGAGCATCAGATCCCATTACAGAT-GGTTGTGAACCACCATGTGGTT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGAGAGCATCAGATCCCATTACAGATGGGTTGTGAACCACCATGTGGTT  850

seq1  GCTGGGATTGAACTTGGGACCTCTA-GAAGAGCAGTCAGTGCTCTTAACT  898
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTGGGA-TGAACTTGGGACCTCTAGGAAGAGCAGTCAGTGCTCTTAACT  899

seq1  ACTGAGCCATCTCTCCAGCCCCAATATAATCATTTTAAATTACTTAATAG  948
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  ACTGAGCCATCTCTCCAGCCCCAATAT-ATCATTTTAAATTACTT-ATAG  947

seq1  TTACA-TTTCTCCAAAACAAGTTAGAAAAGAATAATACCCATTT-GGGCT  996
      ||||| ||||||| |||||||||||||||| ||||||||||||| |||||
seq2  TTACATTTTCTCC-AAACAAGTTAGAAAAG-ATAATACCCATTTGGGGCT  995

seq1  ATCAAGAAAAGTTAATAAACACAAGGGCTTCCATAGTTTTGTTAGCATTT  1046
      ||||   ||||||||| ||| ||||||||| ||||  |||||||||||||
seq2  ATCA--GAAAGTTAAT-AACCCAAGGGCTT-CATAAGTTTGTTAGCATTT  1041

seq1  CCTGTTATGT-GTACAATTGAGCATGCTTTCCTGCTCCTTTA  1087
      |||| ||||| ||  || ||| ||||||||| |||| |||||
seq2  CCTG-TATGTAGT--AAATGAACATGCTTTCTTGCT-CTTTA  1079

seq1: chr11_72857277_72857727
seq2: B6Ng01-105I19.g_71_521 (reverse)

seq1  AACTGAGCCCTAACAACAGTGGGTCTGATTAAAGGTTTGGGAGGCAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCCCTAACAACAGTGGGTCTGATTAAAGGTTTGGGAGGCAGTGG  50

seq1  AACATGCCTTGGGGAACCTTGGTGCCTATGAGAAGATGTTTACAGGCTGT  100
      |||||||   ||||||||||||||| ||||||||||||||||||||||||
seq2  AACATGCAAAGGGGAACCTTGGTGCATATGAGAAGATGTTTACAGGCTGT  100

seq1  GAATCCTACAGACCTGTTTCCAGGTCTCTGTTTCCTCAATCTCTTAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTACAGACCTGTTTCCAGGTCTCTGTTTCCTCAATCTCTTAGTCT  150

seq1  ATATGGTGGCTCAGGGGTGGGGGTGGGGGATGGGAACTTCTGAGGGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTGGCTCAGGGGTGGGGGTGGGGGATGGGAACTTCTGAGGGTTTC  200

seq1  AGATTTCCCAGGGGATATGTATCTCAGGTTACAGTGTGACCTCCACTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCCAGGGGATATGTATCTCAGGTTACAGTGTGACCTCCACTATA  250

seq1  CACAGGAGATCACACTCAGACAGACTTCACCTTCTCAAATGTAAATAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGATCACACTCAGACAGACTTCACCTTCTCAAATGTAAATAGAC  300

seq1  AGTATTCCCCCCCTCCCCCCGTGGGGAGCTGGGGGTAGGTGGTGCTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCCCCCCCTCCCCCCGTGGGGAGCTGGGGGTAGGTGGTGCTGGGT  350

seq1  CCTGGGTGTCTATTGAAGATGTGATCGGTACAGCAAGTATTGGTACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGTCTATTGAAGATGTGATCGGTACAGCAAGTATTGGTACAGCA  400

seq1  AGTGGCAGTCCGGCTGCACTAGGCCTCTGAGGTGTCAGTGCTATTGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAGTCCGGCTGCACTAGGCCTCTGAGGTGTCAGTGCTATTGAATT  450

seq1  C  451
      |
seq2  C  451