BAC Information

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BAC

Clone NameB6Ng01-105N07
Chromosome11 (Build37)
Map Location 23,242,963 - 23,358,694
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202
Downstream geneAhsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105N07.bB6Ng01-105N07.g
ACCDH913744DH913745
length1,1161,157
definitionDH913744|Mus musculus domesticus DNA, BAC clone: B6Ng01-105N07, 5' end.DH913745|Mus musculus domesticus DNA, BAC clone: B6Ng01-105N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,357,561 - 23,358,694)(23,242,963 - 23,244,150)
sequence
gaattcatttttcctgtctaatagaaaaaattcagtaaattatggcaata
aaacaagtatgttctattgaaaactttgtattatttcttttgcaatctct
gaacccccaaatcacttactttgattttttaaaaatgtactaaagatgct
tctgttttatgaaaaatgaccttttctttctttggcatggaggataagat
agtgtctctctacatagccccggctctcctgaaattcactatgtaaacca
gactggcctttgtctgcctcctgaatcctgggattgtgaaatggtttcta
cctaaatcagacatgcatgacactgtgctccaccttccattaccactcca
aatacaccaaactctggagagtttatgatacatgctgtaaacactgaagt
atggtatagaagtagcactctgatatatagaatttatatgtatgtattca
tattaagttggaaaactatatttgcaataaagggagaattaactgttagt
taaaattatatacctattagcaaacccttacatacctcaggtgtcaactt
tgctattgaagtgaaaagcatagatacaatctgaaacagaaaaagtagga
ttttagaatactatttttaaaacatttaaaaaagttgaagactcctttca
gtacttacatgttctgcaagtcgattgttgtaccgacacaggctaaaaat
tagattacaagtttgtcttatattgatgccatcacgaatgtgttgaaata
agaagggaaatccctgttaaaaacacaagttgttcgtttgagaactacta
tatcatttttagaatgactgaattgtttaatcttagtaaaggtattacct
ttcctcctgttaatgcagccatgtcagtctgtgacatgtcaaatgcctaa
aagaaaatatttagtggaaataaatctttccatgtggactagctttagct
attacagcatgacatgcatgaaacctgtcagtctattataccatatcacc
tgcacataaaatttggggacaggagagtgttgattgctagatttctacta
gcatcttaggcattttcaagactgcacatggaacactggagttaacttat
ttctatttcataatca
gaattcaaggccattctgggcttcaacagtgagacactatctccaaaaaa
aaggaaaaaagagaaaaaagttaggggtgtggttcaattgtagaatactt
gtctgacactttgccaggtactgtgaaagaagcttaggcagaaagaggaa
aacagtgtacagtgtgttctactggaaaggcttctgtagaaggctttaag
aatccttcagacctgagatactgtaacttcagtaggggaagttgctattg
atggctgtaagatacactcttgagattttataagatcacttttagaaaat
ttttgtttttagaccatcatttaataatggtctaatactttttttttttt
taattaggatatatcgacacaagaaagtaacatattaggggcattctgtg
atatgaatgtaagtatttttttatattctaaggtttatgaaatttgtttt
atcttttgagtttttacatctgatagtaaatcagtgttgctcataaactg
aaaatgattacttataaatttaaaaggatacacctttgttttttacagga
tgtagaagtacccttgcatttgcttcgttatgtctgtctgttttgtggga
aaaatggcctttctctcatgaaggattgctttgaatatgggactcctgag
acgttaccatttcttatagcacatgcatttattacagttgtttctaatgt
aagtattgtttggaattattctttaacttttttagcataatgtctgcatt
tcaatgtcatgaaatttttttggccagaaattgcaggttttgatttaatt
tttgcataatttaaaaactaaatatgtaaagtctatttttaaaggaataa
aattataatgtgaataaaattagtcaacttttaaatttaaaataggtaaa
ggttgctcttacctcttttatataaaaggcaaagtaggtagcttgtgttg
aaattacctttgtctagattttgtctggaaactttatttatttatttatt
tggtttttgagtcactttttatactttgcacatactcaatggtgcattta
aacctcccttaatttggctattttaccagtgtctttaaaggggcgcagaa
tttttttaaattttttttatgtctgagatatgatttaagtttaagcactt
ctgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_23357561_23358694
seq2: B6Ng01-105N07.b_48_1163 (reverse)

seq1  TGATTTAATGAAATAGAAATAAGGTAAACTCAGTGTTCCATGGTGCAGTC  50
      |||||  |||||||||||||||| |||   ||||||||||| ||||||||
seq2  TGATT--ATGAAATAGAAATAAGTTAACTCCAGTGTTCCAT-GTGCAGTC  47

seq1  TTGGAAAATTGCCTAAGATGCTTAGTAAGAAAATCTAGCAATCAAACACT  100
      |||  ||| |||||||||||| |||||   ||||||||||||| ||||| 
seq2  TTG--AAAATGCCTAAGATGC-TAGTA--GAAATCTAGCAATC-AACAC-  90

seq1  TCTCCTGTCCCCAAATTTTATGGTGGCAGGTTGATATGGTTATAATAGAC  150
      ||||||||||||||||||||||   ||||| |||||||| ||||||||||
seq2  TCTCCTGTCCCCAAATTTTATG--TGCAGG-TGATATGG-TATAATAGAC  136

seq1  TTGACAGGTTTCATGCATGTCATGCTGTTAATAGCTAAAAGCTAGTCCAC  200
       |||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  -TGACAGGTTTCATGCATGTCATGCTG-TAATAGCT-AAAGCTAGTCCAC  183

seq1  ATGGGAAAGATTTATTTCCACT-AATATTTTCTTTTAGGCATTTGACATT  249
      || ||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  AT-GGAAAGATTTATTTCCACTAAATATTTTCTTTTAGGCATTTGACA-T  231

seq1  GTCACAGACTGACATGGCTGCATTAACAGGAGGAAAGGTAATACCTTTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGACTGACATGGCTGCATTAACAGGAGGAAAGGTAATACCTTTAC  281

seq1  TAAGATTAAACAATTCAGTCATTCTAAAAATGATATAGTAGTTCTCAAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTAAACAATTCAGTCATTCTAAAAATGATATAGTAGTTCTCAAAC  331

seq1  GAACAACTTGTGTTTTTAACAGGGATTTCCCTTCTTATTTCAACACATTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTTGTGTTTTTAACAGGGATTTCCCTTCTTATTTCAACACATTC  381

seq1  GTGATGGCATCAATATAAGACAAACTTGTAATCTAATTTTTAGCCTGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCATCAATATAAGACAAACTTGTAATCTAATTTTTAGCCTGTGT  431

seq1  CGGTACAACAATCGACTTGCAGAACATGTAAGTACTGAAAGGAGTCTTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACAACAATCGACTTGCAGAACATGTAAGTACTGAAAGGAGTCTTCA  481

seq1  ACTTTTTTAAATGTTTTAAAAATAGTATTCTAAAATCCTACTTTTTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTAAATGTTTTAAAAATAGTATTCTAAAATCCTACTTTTTCTGT  531

seq1  TTCAGATTGTATCTATGCTTTTCACTTCAATAGCAAAGTTGACACCTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTGTATCTATGCTTTTCACTTCAATAGCAAAGTTGACACCTGAG  581

seq1  GTATGTAAGGGTTTGCTAATAGGTATATAATTTTAACTAACAGTTAATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAAGGGTTTGCTAATAGGTATATAATTTTAACTAACAGTTAATTC  631

seq1  TCCCTTTATTGCAAATATAGTTTTCCAACTTAATATGAATACATACATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTATTGCAAATATAGTTTTCCAACTTAATATGAATACATACATAT  681

seq1  AAATTCTATATATCAGAGTGCTACTTCTATACCATACTTCAGTGTTTACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATATATCAGAGTGCTACTTCTATACCATACTTCAGTGTTTACA  731

seq1  GCATGTATCATAAACTCTCCAGAGTTTGGTGTATTTGGAGTGGTAATGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATCATAAACTCTCCAGAGTTTGGTGTATTTGGAGTGGTAATGGA  781

seq1  AGGTGGAGCACAGTGTCATGCATGTCTGATTTAGGTAGAAACCATTTCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGCACAGTGTCATGCATGTCTGATTTAGGTAGAAACCATTTCAC  831

seq1  AATCCCAGGATTCAGGAGGCAGACAAAGGCCAGTCTGGTTTACATAGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGGATTCAGGAGGCAGACAAAGGCCAGTCTGGTTTACATAGTGA  881

seq1  ATTTCAGGAGAGCCGGGGCTATGTAGAGAGACACTATCTTATCCTCCATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGAGAGCCGGGGCTATGTAGAGAGACACTATCTTATCCTCCATG  931

seq1  CCAAAGAAAGAAAAGGTCATTTTTCATAAAACAGAAGCATCTTTAGTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAAGAAAAGGTCATTTTTCATAAAACAGAAGCATCTTTAGTACA  981

seq1  TTTTTAAAAAATCAAAGTAAGTGATTTGGGGGTTCAGAGATTGCAAAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAATCAAAGTAAGTGATTTGGGGGTTCAGAGATTGCAAAAGA  1031

seq1  AATAATACAAAGTTTTCAATAGAACATACTTGTTTTATTGCCATAATTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACAAAGTTTTCAATAGAACATACTTGTTTTATTGCCATAATTTA  1081

seq1  CTGAATTTTTTCTATTAGACAGGAAAAATGAATTC  1134
      |||||||||||||||||||||||||||||||||||
seq2  CTGAATTTTTTCTATTAGACAGGAAAAATGAATTC  1116

seq1: chr11_23242963_23244150
seq2: B6Ng01-105N07.g_67_1223

seq1  GAATTCAAGGCCATTCTGGGCTTCAACAGTGAGACACTATCTCCAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCATTCTGGGCTTCAACAGTGAGACACTATCTCCAAAAAA  50

seq1  AAGGAAAAAAGAGAAAAAAGTTAGGGGTGTGGTTCAATTGTAGAATACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAGAGAAAAAAGTTAGGGGTGTGGTTCAATTGTAGAATACTT  100

seq1  GTCTGACACTTTGCCAGGTACTGTGAAAGAAGCTTAGGCAGAAAGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACACTTTGCCAGGTACTGTGAAAGAAGCTTAGGCAGAAAGAGGAA  150

seq1  AACAGTGTACAGTGTGTTCTACTGGAAAGGCTTCTGTAGAAGGCTTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTACAGTGTGTTCTACTGGAAAGGCTTCTGTAGAAGGCTTTAAG  200

seq1  AATCCTTCAGACCTGAGATACTGTAACTTCAGTAGGGGAAGTTGCTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCAGACCTGAGATACTGTAACTTCAGTAGGGGAAGTTGCTATTG  250

seq1  ATGGCTGTAAGATACACTCTTGAGATTTTATAAGATCACTTTTAGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTAAGATACACTCTTGAGATTTTATAAGATCACTTTTAGAAAAT  300

seq1  TTTTGTTTTTAGACCATCATTTAATAATGGTCTAATACTTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTAGACCATCATTTAATAATGGTCTAATACTTTTTTTTTTTT  350

seq1  TAATTAGGATATATCGACACAAGAAAGTAACATATTAGGGGCATTCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGGATATATCGACACAAGAAAGTAACATATTAGGGGCATTCTGTG  400

seq1  ATATGAATGTAAGTATTTTTTTATATTCTAAGGTTTATGAAATTTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATGTAAGTATTTTTTTATATTCTAAGGTTTATGAAATTTGTTTT  450

seq1  ATCTTTTGAGTTTTTACATCTGATAGTAAATCAGTGTTGCTCATAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGAGTTTTTACATCTGATAGTAAATCAGTGTTGCTCATAAACTG  500

seq1  AAAATGATTACTTATAAATTTAAAAGGATACACCTTTGTTTTTTACAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTACTTATAAATTTAAAAGGATACACCTTTGTTTTTTACAGGA  550

seq1  TGTAGAAGTACCCTTGCATTTGCTTCGTTATGTCTGTCTGTTTTGTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGTACCCTTGCATTTGCTTCGTTATGTCTGTCTGTTTTGTGGGA  600

seq1  AAAATGGCCTTTCTCTCATGAAGGATTGCTTTGAATATGGGACTCCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCCTTTCTCTCATGAAGGATTGCTTTGAATATGGGACTCCTGAG  650

seq1  ACGTTACCATTTCTTATAGCACATGCATTTATTACAGTTGTTTCTAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTACCATTTCTTATAGCACATGCATTTATTACAGTTGTTTCTAATGT  700

seq1  AAGTATTGTTTGGAATTATTCTTTAACTTTTTTAGCATAATGTCTGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGTTTGGAATTATTCTTTAACTTTTTTAGCATAATGTCTGCATT  750

seq1  TCAATGTCATGAAATTTTTTTGGCCAGAAATTGCAGGTTTTGATTTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTCATGAAATTTTTTTGGCCAGAAATTGCAGGTTTTGATTTAATT  800

seq1  TTTGCATAATTTAAAAACTAAATATGTAAAGTCTATTTTTAAAAGGTAAT  850
      |||||||||||||||||||||||||||||||||||||||||||  | |||
seq2  TTTGCATAATTTAAAAACTAAATATGTAAAGTCTATTTTTAAA--GGAAT  848

seq1  AAAATTATAATGTGAATAAAATTAGTCAACTTTTAAATTTAAAATAGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAATGTGAATAAAATTAGTCAACTTTTAAATTTAAAATAGGTA  898

seq1  AAGGTTGCTCTTACCTCTTTTATATAAAAGGCAAAGGTAGGTAGCTTGTG  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGGTTGCTCTTACCTCTTTTATATAAAAGGCAAA-GTAGGTAGCTTGTG  947

seq1  TTGAAATTAACCTTTGTCTAGGATTTTGTCCTGGGAAAACTTTATTTATT  1000
      |||||||| ||||||||||| |||||||| ||||  ||||||||||||||
seq2  TTGAAATT-ACCTTTGTCTA-GATTTTGT-CTGG--AAACTTTATTTATT  992

seq1  TATTTATTTTGGTTTTTGAGTCACTTTTTATACTTTGCACATAAACCTCA  1050
      |||||| ||||||||||||||||||||||||||||||||||||   ||||
seq2  TATTTA-TTTGGTTTTTGAGTCACTTTTTATACTTTGCACATA---CTCA  1038

seq1  ATTGGTTGCATTTAAACTTCACTTTAATTTGGCTTAATCTTTACCATGTT  1100
      ||  | ||||||||||| || | |||||||||||  || |||||||   |
seq2  AT--GGTGCATTTAAACCTC-CCTTAATTTGGCT--AT-TTTACCA--GT  1080

seq1  GTCTTTTATAAGTGGCGCAGATATTTCTTTAAAAATTTTTTTTATGGTCT  1150
      ||||||   ||| |||||||| |||| |||  ||||||||||||| ||||
seq2  GTCTTT--AAAGGGGCGCAGA-ATTTTTTT--AAATTTTTTTTAT-GTCT  1124

seq1  GGAGATATGATTCAGAGGTTAAGAGCACTTCTTGTTTT  1188
       ||||||||||| | || |||  |||||||| ||||||
seq2  -GAGATATGATTTA-AGTTTA--AGCACTTC-TGTTTT  1157