BAC Information

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BAC

Clone NameB6Ng01-106C04
Chromosome11 (Build37)
Map Location 5,273,647 - 5,431,139
singlet/doubletdoublet
Overlap geneZnrf3, LOC100042016, LOC382478, Xbp1, Ccdc117
Upstream geneHormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1
Downstream geneLOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106C04.bB6Ng01-106C04.g
ACCDH913960DH913961
length1,185238
definitionDH913960|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C04, 5' end.DH913961|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,429,948 - 5,431,139)(5,273,647 - 5,273,884)
sequence
gaattcaactttttgccaaggaagcttatctcaagggaaatgcagttttt
taataggcttatccaggaaatgttacagtctctttaacgacagctataga
tgctggatgtgttccgatgacttaggtcatgtcacattgttgaagccatt
cattcttgagatgattctgtacaggagtgctcctaatcgccactgcaccc
taattgctgagtcatgtgctgagctacttgtagtggtcactgtacacgtg
gggctcgggagggaagagagcaggacttgtctcttgtgaaggaatggaac
aagcaaagaaacttgtgttggtgtcaggttggtgtagctggatcacccaa
gtagtagcccttgatctcctttcatgacggataggctcagttagtcagga
atgtttacacctcagttaacttcagtgattgacttaaagactgggaggta
tattgcctgtgagagaaatgtcttttcatgaatcctaaggacatgctgtg
tcagctaaacctacaattgattgcttctagagtttaaaaagggaaagttg
tgcttgtatttgcaagttgaatttttttaatgttggttccaaaaacagtg
aattagctgaaaagaaatggagaagtgtcttggagatttactgaaatagc
taattgtcaggtgcttaagcttttgtgcagtaagcctaaaagttagcaga
agatggcctcctgccagcaggaaatctttaccctttagtacccgaaccag
tctcaaggtgttctttggaaataaccagggttaaagtttttaatttctca
ggaagagctcttcagcatggcaggacgtgtaatgagggctttcgcaagtc
cttcagcgctgcagagcagtaagctatccatccagtgagtgtgggcggct
ctttctacagctgaactcctcctcagttgagttttcagtttctggcttgc
ttctccctttgtataggggagaacagagagaggtttatgctgaggggggg
gtgactttttagaacgtagcttcttggcgttttgcaacccatgctgggcc
tcccttctgcagatggcaataggagtcggtttgtctttggactgtctcct
ctgctgttgtctgccccctccggtttcgggtctagatgtcaggaaggtaa
tgttatattaacaaatattaatatctacacaataa
tgaggacagaagtaatgtggtctggcgtgtcttttaactggattgctata
gctgctgctgtacttggaaagaattggtatggggaagaccatagaaagtg
ggactgcataaggaaagctaggcaggaggcttgaggagaagcaatagcag
tgtggaatcaggtagtaaagtaaaggtgttggttgagaagtggttagtta
ggctctgagagtgaaagtagaatggtggggtggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_5429948_5431139
seq2: B6Ng01-106C04.b_46_1230 (reverse)

seq1  TTATTGTGTAGATATAAATATTTTGTTTAAATATTAAACATTAAACCTTT  50
      ||||||||||||||| |||| ||||||  |||||  ||||||  |||  |
seq2  TTATTGTGTAGATATTAATA-TTTGTT--AATAT--AACATT--ACC--T  41

seq1  TCCTGACATCTAGA-CAGAAA-CGGAGAGAGCAGGAACAACAGCAGAGGA  98
      |||||||||||||| | |||| ||||| | ||||  ||||||||||||||
seq2  TCCTGACATCTAGACCCGAAACCGGAGGGGGCAG--ACAACAGCAGAGGA  89

seq1  GACAGTCCAAAGACAGACGGACTCCTA-TGCCATCTGCAGGAGGGAGG-C  146
      ||||||||||||||| || |||||||| |||||||||||| ||||||| |
seq2  GACAGTCCAAAGACAAACCGACTCCTATTGCCATCTGCAGAAGGGAGGCC  139

seq1  CAGCATGGGTTGCAAAACGCCAAGAAGCTACGTTTCTAAAAAGTCA-CCC  195
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  CAGCATGGGTTGCAAAACGCCAAGAAGCTACG-TTCTAAAAAGTCACCCC  188

seq1  CCCCTCAGCATAAACCTCTTCTCTGTTCTCCCCTATACAAAGGGAGAAGC  245
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCCTCAGCATAAACCTC-TCTCTGTTCTCCCCTATACAAAGGGAGAAGC  237

seq1  AAGCCAGAAACTGAAAACTCAACTGAGGAGGAGTTCAGCTGTAGAAAGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAAACTGAAAACTCAACTGAGGAGGAGTTCAGCTGTAGAAAGAG  287

seq1  CCG-CCACACTCACTGGATGGATAGCTTACTGCTCTGCAGCGCTGAAGGA  344
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCACACTCACTGGATGGATAGCTTACTGCTCTGCAGCGCTGAAGGA  337

seq1  CTTGCGAAAGCCCTCATTACACGTCCTGCCATGCTGAAGAGCTCTTCCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGAAAGCCCTCATTACACGTCCTGCCATGCTGAAGAGCTCTTCCTG  387

seq1  AGAAATTAAAAACTTTAACCCTGGTTATTTCCAAAGAACACCTTGAGACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAAAAACTTTAACCCTGGTTATTTCCAAAGAACACCTTGAGACT  437

seq1  GGTTCGGGTACTAAAGGGTAAAGATTTCCTGCTGGCAGGAGGCCATCTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGGGTACTAAAGGGTAAAGATTTCCTGCTGGCAGGAGGCCATCTTC  487

seq1  TGCTAACTTTTAGGCTTACTGCACAAAAGCTTAAGCACCTGACAATTAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACTTTTAGGCTTACTGCACAAAAGCTTAAGCACCTGACAATTAGC  537

seq1  TATTTCAGTAAATCTCCAAGACACTTCTCCATTTCTTTTCAGCTAATTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGTAAATCTCCAAGACACTTCTCCATTTCTTTTCAGCTAATTCA  587

seq1  CTGTTTTTGGAACCAACATTAAAAAAATTCAACTTGCAAATACAAGCACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTGGAACCAACATTAAAAAAATTCAACTTGCAAATACAAGCACA  637

seq1  ACTTTCCCTTTTTAAACTCTAGAAGCAATCAATTGTAGGTTTAGCTGACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCTTTTTAAACTCTAGAAGCAATCAATTGTAGGTTTAGCTGACA  687

seq1  CAGCATGTCCTTAGGATTCATGAAAAGACATTTCTCTCACAGGCAATATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGTCCTTAGGATTCATGAAAAGACATTTCTCTCACAGGCAATATA  737

seq1  CCTCCCAGTCTTTAAGTCAATCACTGAAGTTAACTGAGGTGTAAACATTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGTCTTTAAGTCAATCACTGAAGTTAACTGAGGTGTAAACATTC  787

seq1  CTGACTAACTGAGCCTATCCGTCATGAAAGGAGATCAAGGGCTACTACTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAACTGAGCCTATCCGTCATGAAAGGAGATCAAGGGCTACTACTT  837

seq1  GGGTGATCCAGCTACACCAACCTGACACCAACACAAGTTTCTTTGCTTGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATCCAGCTACACCAACCTGACACCAACACAAGTTTCTTTGCTTGT  887

seq1  TCCATTCCTTCACAAGAGACAAGTCCTGCTCTCTTCCCTCCCGAGCCCCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCTTCACAAGAGACAAGTCCTGCTCTCTTCCCTCCCGAGCCCCA  937

seq1  CGTGTACAGTGACCACTACAAGTAGCTCAGCACATGACTCAGCAATTAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTACAGTGACCACTACAAGTAGCTCAGCACATGACTCAGCAATTAGG  987

seq1  GTGCAGTGGCGATTAGGAGCACTCCTGTACAGAATCATCTCAAGAATGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGGCGATTAGGAGCACTCCTGTACAGAATCATCTCAAGAATGAA  1037

seq1  TGGCTTCAACAATGTGACATGACCTAAGTCATCGGAACACATCCAGCATC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCAACAATGTGACATGACCTAAGTCATCGGAACACATCCAGCATC  1087

seq1  TATAGCTGTCGTTAAAGAGACTGTAACATTTCCTGGATAAGCCTATTAAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTGTCGTTAAAGAGACTGTAACATTTCCTGGATAAGCCTATTAAA  1137

seq1  AAACTGCATTTCCCTTGAGATAAGCTTCCTTGGCAAAAAGTTGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCATTTCCCTTGAGATAAGCTTCCTTGGCAAAAAGTTGAATTC  1185

seq1: chr11_5273647_5273884
seq2: B6Ng01-106C04.g_72_309

seq1  TGAGGACAGAAGTAATGTGGTCTGGCGTGTCTTTTAACTGGATTGCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAGAAGTAATGTGGTCTGGCGTGTCTTTTAACTGGATTGCTATA  50

seq1  GCTGCTGCTGTACTTGGAAAGAATTGGTATGGGGAAGACCATAGAAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGTACTTGGAAAGAATTGGTATGGGGAAGACCATAGAAAGTG  100

seq1  GGACTGCATAAGGAAAGCTAGGCAGGAGGCTTGAGGAGAAGCAATAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCATAAGGAAAGCTAGGCAGGAGGCTTGAGGAGAAGCAATAGCAG  150

seq1  TGTGGAATCAGGTAGTAAAGTAAAGGTGTTGGTTGAGAAGTGGTTAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATCAGGTAGTAAAGTAAAGGTGTTGGTTGAGAAGTGGTTAGTTA  200

seq1  GGCTCTGAGAGTGAAAGTAGAATGGTGGGGTGGGGTGG  238
      ||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAGAGTGAAAGTAGAATGGTGGGGTGGGGTGG  238