BAC Information

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BAC

Clone NameB6Ng01-106E24
Chromosome11 (Build37)
Map Location 81,398,661 - 81,578,951
singlet/doubletdoublet
Overlap geneAccn1
Upstream geneMyo1d, Tmem98, Spaca3, 1700071K01Rik
Downstream gene5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e, Cct6b, Ccdc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106E24.bB6Ng01-106E24.g
ACCDH914088DH914089
length1,1111,114
definitionDH914088|Mus musculus domesticus DNA, BAC clone: B6Ng01-106E24, 5' end.DH914089|Mus musculus domesticus DNA, BAC clone: B6Ng01-106E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,398,661 - 81,399,803)(81,577,829 - 81,578,951)
sequence
gaattcattcatttactcattcattcattcattcgcttagcagttggggt
atttgaactcacacatggccccacacactgcagtaggcattacaatgctc
aaagggacttccagctctttcccctttccaggcccattcctttggaagct
gggcttcactggtcaccttgctttggacagtgaaatatgagtaaaggtga
caaatgtgatttctggaccaaataacttaatggcctctgctccattccca
acattttcttcttttgtcatggtagacctcggagcccttgtttgtggtat
agcctggcaggtaaaggctcccctgtcaacgatggccttgagcaatgaac
acaactccttggtagtccacattagacttagaacacaggagagaagaaag
tctttgatatactaacactgatgtttcagggccatttgttactgtgccat
actcacatttagctgacatccactctgtcatttacttagtaagttttgtt
tttaagtacttcggaaatatgatacttcttagaggctcagggatgataag
gaacaaaatggaccttgattgtgttcacacagagataaaatcaactggga
agtgggatacagacagatgtgtagacacatatctgtctgtgggtatctta
cacacattctgtgtagaaaaataaagccagataggaagtttgggggatac
attctgtatgcagtgagtagagagctccctttgagaagatgacaatggcc
cagatatctgggttgagtagaagcaccaactgtccagctacccggaggat
cttctgcagagcaaagagagcacactaaggactgaggtcacctaagactg
cgtgcagcagctgtggcgcgtacaccagggtggctgggtccaagtagaga
tttaaatgtcaccgccaaaggccgggcagagaaagaataaagcagagctt
cgtggagcatacattgagacacagaaggacatcctcagtcagcagacagc
gatcgatttccaaaacagacgaagattgacaggcattggaaaaaaccacg
aataagatattcataccaataccaatacctgctcagatcctatattccaa
gatatgagatt
gaattccttcttccatgagtaactttctagcccagctgtgcggagcagcg
ggcaatgcacgtttacagagtgctgtgaggctgaggttgggggcttaccc
aaacctcttccttagtcacctgtgtgaccttgaggtattattcagtacaa
cccctgccctccattcccccaaccataaaacgaaccacagaagaggtgat
gaataaggccttttctaactgccctagtatatacgtttcacagaaatgtg
gtctgtagatagatggaccagtcagccttggaaactggaaatatttgcag
gcacagccctcgtatgtcagcctgtcatctgccagggggtctgaagtttg
gagagaaatgggttccattttctttcttggcacagagctctggccagcat
cagaggtaccacctttttccatctcctgccagtagatgtctctgtctgga
aactttgaatctttgaatatgttccctaaacaatgggatttagcaacaac
agcagggaaacggagcctaatgagggagtaaggaaaccagtggagcagag
ggcagggattaatgccatcattgttatcacgagaaggactcatggaggtt
ccttggaagagagttaatcccctcaatcaagggcctgttcttacctttct
gtctttccccatggagtgctgtagcaagaagaccttccccagatgttgtc
agtctttagaaccaatcaatagtgctctgaggtccaggcagggcctggta
gctggaccaaatggactggaggtacctttgctgcatggtctgtatagcct
agccatggatactgagcaagctgcctgggcagaagccatgtcatcatctc
aggagcttgggagccacctgcatgagaagagggctcttcctggctgtgcc
atatccaaactctgattattctttgtgaggtatcagtgtattaaagagat
gcatgagcaatggaattccagggctgagttttatctttaccctttgtggt
ggatttaggaatgtagtactagtcaagtgtccatttccaatatgtatcac
cctctagctcacaggcagtattttttaagatgatggagtaatttaaaact
gctctttaaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_81398661_81399803
seq2: B6Ng01-106E24.b_40_1150

seq1  GAATTCATTCATTTACTCATTCATTCATTCATTCGCTTAGCAGTTGGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTTACTCATTCATTCATTCATTCGCTTAGCAGTTGGGGT  50

seq1  ATTTGAACTCACACATGGCCCCACACACTGCAGTAGGCATTACAATGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTCACACATGGCCCCACACACTGCAGTAGGCATTACAATGCTC  100

seq1  AAAGGGACTTCCAGCTCTTTCCCCTTTCCAGGCCCATTCCTTTGGAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACTTCCAGCTCTTTCCCCTTTCCAGGCCCATTCCTTTGGAAGCT  150

seq1  GGGCTTCACTGGTCACCTTGCTTTGGACAGTGAAATATGAGTAAAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCACTGGTCACCTTGCTTTGGACAGTGAAATATGAGTAAAGGTGA  200

seq1  CAAATGTGATTTCTGGACCAAATAACTTAATGGCCTCTGCTCCATTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGATTTCTGGACCAAATAACTTAATGGCCTCTGCTCCATTCCCA  250

seq1  ACATTTTCTTCTTTTGTCATGGTAGACCTCGGAGCCCTTGTTTGTGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTTCTTTTGTCATGGTAGACCTCGGAGCCCTTGTTTGTGGTAT  300

seq1  AGCCTGGCAGGTAAAGGCTCCCCTGTCAACGATGGCCTTGAGCAATGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCAGGTAAAGGCTCCCCTGTCAACGATGGCCTTGAGCAATGAAC  350

seq1  ACAACTCCTTGGTAGTCCACATTAGACTTAGAACACAGGAGAGAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCCTTGGTAGTCCACATTAGACTTAGAACACAGGAGAGAAGAAAG  400

seq1  TCTTTGATATACTAACACTGATGTTTCAGGGCCATTTGTTACTGTGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATATACTAACACTGATGTTTCAGGGCCATTTGTTACTGTGCCAT  450

seq1  ACTCACATTTAGCTGACATCCACTCTGTCATTTACTTAGTAAGTTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATTTAGCTGACATCCACTCTGTCATTTACTTAGTAAGTTTTGTT  500

seq1  TTTAAGTACTTCGGAAATATGATACTTCTTAGAGGCTCAGGGATGATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTACTTCGGAAATATGATACTTCTTAGAGGCTCAGGGATGATAAG  550

seq1  GAACAAAATGGACCTTGATTGTGTTCACACAGAGATAAAATCAACTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAATGGACCTTGATTGTGTTCACACAGAGATAAAATCAACTGGGA  600

seq1  AGTGGGATACAGACAGATGTGTAGACACATATCTGTCTGTGGGTATCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGATACAGACAGATGTGTAGACACATATCTGTCTGTGGGTATCTTA  650

seq1  CACACATTCTGTGTAGAAAAATAAAGCCAGATAGGAAGTTTGGGGGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTCTGTGTAGAAAAATAAAGCCAGATAGGAAGTTTGGGGGATAC  700

seq1  ATTCTGTATGCAGTGAGTAGAGAGCTCCCTTTGAGAAGATGACAATGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATGCAGTGAGTAGAGAGCTCCCTTTGAGAAGATGACAATGGCC  750

seq1  CAGATATCTGGGTTGAGTAGAAGCACCAACTGTCCAGCTACCCGGAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCTGGGTTGAGTAGAAGCACCAACTGTCCAGCTACCCGGAGGAT  800

seq1  CTTCTGCAGAGCAAAGAGAGCACACTAAGGACTGAGGTCACCTAAGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCAGAGCAAAGAGAGCACACTAAGGACTGAGGTCACCTAAGACTG  850

seq1  CGTGCAGCAGCTGTGGCGCGTACACCAGGGTGGCTGGGTCCAAGTAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CGTGCAGCAGCTGTGGCGCGTACACCAGGGTGGCTGGGTCCAAGTAG-AG  899

seq1  ATTTAAAATGTCACCGCCAAAGGCCGGGGCAGAGAAAAGAATAAAGCCAG  950
      |||| |||||||||||||||||||| |||||||| ||||||||||| |||
seq2  ATTT-AAATGTCACCGCCAAAGGCC-GGGCAGAG-AAAGAATAAAG-CAG  945

seq1  AGCCCCGTGGGAGCATACATTGAGAACACAGAAAGAACATCCTCAAGTCA  1000
      |||  ||| ||||||||||||||| |||||| ||| |||||||| |||||
seq2  AGCTTCGT-GGAGCATACATTGAG-ACACAG-AAGGACATCCTC-AGTCA  991

seq1  GCAAGACAAGCGAATCGAATTTCCAAAAACAGACGAAAGATTTGAACAGG  1050
      || |||| |||| |||| |||||| |||||||||| ||||||   |||||
seq2  GC-AGAC-AGCG-ATCG-ATTTCC-AAAACAGACG-AAGATT--GACAGG  1033

seq1  CAATTTGAAAAAAAACCAACAGATACAGATATTTAAATTACCAATAAACC  1100
      ||  ||| ||||||  | ||  ||| ||||||| |   |||||||  |||
seq2  CA--TTGGAAAAAA--CCACGAATA-AGATATTCA---TACCAAT--ACC  1073

seq1  AATACACTGCTCAGATCCTATTATTCCCAAGGATAATGAGATT  1143
      ||||| |||||||||||||| ||||||  | ||| ||||||||
seq2  AATAC-CTGCTCAGATCCTA-TATTCC--AAGAT-ATGAGATT  1111

seq1: chr11_81577829_81578951
seq2: B6Ng01-106E24.g_66_1179 (reverse)

seq1  TATAT---AAGAGCAGTTTTATAAATATTACATCATCATACTCATAAAAA  47
      |||||   ||||||||||||| || || | ||||||| ||     |||||
seq2  TATATTTAAAGAGCAGTTTTA-AATTACTCCATCATCTTA-----AAAAA  44

seq1  TAATG-CTGTGAGCTAGAGGTGAATACATATGTGGAAATGGACACTTGAC  96
      || || ||||||||||||||   |||||||| ||||||||||||||||||
seq2  TACTGCCTGTGAGCTAGAGGGTGATACATAT-TGGAAATGGACACTTGAC  93

seq1  CTTAGTAACTACATTTCCTTAAATCCA-CACAAAGGGTTAAAGATAAAAC  145
        |||| ||||||||  | |||||||| ||||||||| ||||||||||||
seq2  --TAGT-ACTACATT--CCTAAATCCACCACAAAGGG-TAAAGATAAAAC  137

seq1  TCAGCCCTGGAATTCCATTGCTCATGCATTCTCTTTAATACACTGATACC  195
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAGCCCTGGAATTCCATTGCTCATGCA-TCTCTTTAATACACTGATACC  186

seq1  TCACAAAGAATAATCAGAGTTTGGATATGGCACAGCCAGGAAGAGCCCTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGAATAATCAGAGTTTGGATATGGCACAGCCAGGAAGAGCCCTC  236

seq1  TTCTCATGCAGGTGGCTCCCAAGCTCCTGAGATGATGACATGGCTTCTGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGCAGGTGGCTCCCAAGCTCCTGAGATGATGACATGGCTTCTGC  286

seq1  CCAGGCAGCTTGCTCAGTATCCATGGCTAGGCTATACAGACCATGCAGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGCTTGCTCAGTATCCATGGCTAGGCTATACAGACCATGCAGCA  336

seq1  AAGGTACCTCCAGTCCATTTGGTCCAGCTACCAGGCCCTGCCTGGACCTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACCTCCAGTCCATTTGGTCCAGCTACCAGGCCCTGCCTGGACCTC  386

seq1  AGAGCACTATTGATTGGTTCTAAAGACTGACAACATCTGGGGAAGGTCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTATTGATTGGTTCTAAAGACTGACAACATCTGGGGAAGGTCTT  436

seq1  CTTGCTACAGCACTCCATGGGGAAAGACAGAAAGGTAAGAACAGGCCCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTACAGCACTCCATGGGGAAAGACAGAAAGGTAAGAACAGGCCCTT  486

seq1  GATTGAGGGGATTAACTCTCTTCCAAGGAACCTCCATGAGTCCTTCTCGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGGGGATTAACTCTCTTCCAAGGAACCTCCATGAGTCCTTCTCGT  536

seq1  GATAACAATGATGGCATTAATCCCTGCCCTCTGCTCCACTGGTTTCCTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAATGATGGCATTAATCCCTGCCCTCTGCTCCACTGGTTTCCTTA  586

seq1  CTCCCTCATTAGGCTCCGTTTCCCTGCTGTTGTTGCTAAATCCCATTGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCATTAGGCTCCGTTTCCCTGCTGTTGTTGCTAAATCCCATTGTT  636

seq1  TAGGGAACATATTCAAAGATTCAAAGTTTCCAGACAGAGACATCTACTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAACATATTCAAAGATTCAAAGTTTCCAGACAGAGACATCTACTGG  686

seq1  CAGGAGATGGAAAAAGGTGGTACCTCTGATGCTGGCCAGAGCTCTGTGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATGGAAAAAGGTGGTACCTCTGATGCTGGCCAGAGCTCTGTGCC  736

seq1  AAGAAAGAAAATGGAACCCATTTCTCTCCAAACTTCAGACCCCCTGGCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAATGGAACCCATTTCTCTCCAAACTTCAGACCCCCTGGCAG  786

seq1  ATGACAGGCTGACATACGAGGGCTGTGCCTGCAAATATTTCCAGTTTCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGCTGACATACGAGGGCTGTGCCTGCAAATATTTCCAGTTTCCA  836

seq1  AGGCTGACTGGTCCATCTATCTACAGACCACATTTCTGTGAAACGTATAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACTGGTCCATCTATCTACAGACCACATTTCTGTGAAACGTATAT  886

seq1  ACTAGGGCAGTTAGAAAAGGCCTTATTCATCACCTCTTCTGTGGTTCGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGCAGTTAGAAAAGGCCTTATTCATCACCTCTTCTGTGGTTCGTT  936

seq1  TTATGGTTGGGGGAATGGAGGGCAGGGGTTGTACTGAATAATACCTCAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTGGGGGAATGGAGGGCAGGGGTTGTACTGAATAATACCTCAAG  986

seq1  GTCACACAGGTGACTAAGGAAGAGGTTTGGGTAAGCCCCCAACCTCAGCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACAGGTGACTAAGGAAGAGGTTTGGGTAAGCCCCCAACCTCAGCC  1036

seq1  TCACAGCACTCTGTAAACGTGCATTGCCCGCTGCTCCGCACAGCTGGGCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCACTCTGTAAACGTGCATTGCCCGCTGCTCCGCACAGCTGGGCT  1086

seq1  AGAAAGTTACTCATGGAAGAAGGAATTC  1123
      ||||||||||||||||||||||||||||
seq2  AGAAAGTTACTCATGGAAGAAGGAATTC  1114