BAC Information

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BAC

Clone NameB6Ng01-106H04
Chromosome11 (Build37)
Map Location 8,956,465 - 8,957,598
singlet/doubletsinglet
Overlap geneOTTMUSG00000005148
Upstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1
Downstream geneUpp1, LOC626887, LOC100041469, Abca13, LOC665435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106H04.bB6Ng01-106H04.g
ACCDH914187DH914188
length7201,118
definitionDH914187|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H04, 5' end.DH914188|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaaattcttaggcaaatggatgcatctgaaggatatcattct
gagtgaggtaacccaatcacaaaagaacacacatgatatgcactcactga
taaacggatattagcccagaaacttagaatacccaagatacaatttgcaa
aacacatgaaactcaagaagaaagaagaccaaagtgtggatactttgttc
atttttagaatggggaacaaaatacccatggaaggagttacagaaacaaa
gttcggagctgagacagaaggaaggaccatccagagactgtcccacccgg
ggacccatcgcataaacaaccaccaaacccagacactattgcatatgcca
gcaagattttgctgacaggaccctgatatagctatctcttgtgaagctat
gccagtgcctggaaaatgcagaagtggatgttcacagtcatctattggat
ggaacacagggtccccaatgaaggagctagagaaagtacctaaggagtta
aagggatctgcaaccctataggaagaacaacaatatgaactaaccagtac
cccccagagctgtgtctctagttgcatatgtagcagaggatgtcctagta
ggccatcaattggaggaggggcccttggtctttcgaagattctatgcccc
agtacaggggaatgccaaggccaggaagtgggagtgggtgggttgggaag
caggggcgggagggtatagg

gaattcaaccccgatcaggccaatggtagctatgagtccagacaaggccc
ctttgactttgacaggaaaacaatttggcaaagggaggctgaggagcttg
aaaatgtgaagagaaaggtaactcggttggcgagggggcgtccatcatcc
cagccatcatctgcgtctgctttgcttttgtgactccatgaatgatttag
ggggttgctgctgctgtctgcggaaggcctgcagccttggctccttgctc
tgttctctgtgctctgtgttccatgatctgagttctctgctccctgctct
acatgctccattctccatgttatatgctctgagttctatgcttgacctct
gagctcagtacttggtgctctgagctctgtgctctgaactctgagctctg
ggccctgttttaagttttggactactaagaggcaagcaaccacattctcc
ctgtgaatgttgactttgtagtaagattgctttttactggcaggtgtcta
gccagttaactgtaatcttggggaagaaattgacctaacacttcatatct
aacatgtagagcagagatgcatttatgtgtgttcaatatcctgcttctga
gtatttttatcctctttaagtccagattacccacagtgctccttgatgat
gatgataaaggaaagaaagaggaagtgctttcttctatacagagacgccc
agtggtgttttgtctgtgaggtcttaactggcctgcaaggtgaagccttt
tcagaagacttggcctatctgagcaactgggaatcccagaaagtagctag
gatggccagagggttggaatcggcccacctgtactctttgtaggacccat
gagaacatagtcaagtacacacacttccaggggctctacattgctgctag
tatccaggtcggaaatgaattttagcatttgagacatcagggtttatgac
tgaggagtggctttatatttaaattgtcagaggggtttaagtcttagaac
gagagtgggtaccttgttcatttaacagcaaggagacaaggtatcttgga
cactggactaggtttcttcgagtctgggggaagagatgcctcagctctgg
cggactctagttgattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_8956465_8957598
seq2: B6Ng01-106H04.g_68_1185

seq1  GAATTCAACCCCGATCAGGCCAATGGTAGCTATGAGTCCAGACAAGGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCCGATCAGGCCAATGGTAGCTATGAGTCCAGACAAGGCCC  50

seq1  CTTTGACTTTGACAGGAAAACAATTTGGCAAAGGGAGGCTGAGGAGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTTTGACAGGAAAACAATTTGGCAAAGGGAGGCTGAGGAGCTTG  100

seq1  AAAATGTGAAGAGAAAGGTAACTCGGTTGGCGAGGGGGCGTCCATCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGAAGAGAAAGGTAACTCGGTTGGCGAGGGGGCGTCCATCATCC  150

seq1  CAGCCATCATCTGCGTCTGCTTTGCTTTTGTGACTCCATGAATGATTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCATCTGCGTCTGCTTTGCTTTTGTGACTCCATGAATGATTTAG  200

seq1  GGGGTTGCTGCTGCTGTCTGCGGAAGGCCTGCAGCCTTGGCTCCTTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGCTGCTGCTGTCTGCGGAAGGCCTGCAGCCTTGGCTCCTTGCTC  250

seq1  TGTTCTCTGTGCTCTGTGTTCCATGATCTGAGTTCTCTGCTCCCTGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTGTGCTCTGTGTTCCATGATCTGAGTTCTCTGCTCCCTGCTCT  300

seq1  ACATGCTCCATTCTCCATGTTATATGCTCTGAGTTCTATGCTTGACCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTCCATTCTCCATGTTATATGCTCTGAGTTCTATGCTTGACCTCT  350

seq1  GAGCTCAGTACTTGGTGCTCTGAGCTCTGTGCTCTGAACTCTGAGCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGTACTTGGTGCTCTGAGCTCTGTGCTCTGAACTCTGAGCTCTG  400

seq1  GGCCCTGTTTTAAGTTTTGGACTACTAAGAGGCAAGCAACCACATTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGTTTTAAGTTTTGGACTACTAAGAGGCAAGCAACCACATTCTCC  450

seq1  CTGTGAATGTTGACTTTGTAGTAAGATTGCTTTTTACTGGCAGGTGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATGTTGACTTTGTAGTAAGATTGCTTTTTACTGGCAGGTGTCTA  500

seq1  GCCAGTTAACTGTAATCTTGGGGAAGAAATTGACCTAACACTTCATATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTAACTGTAATCTTGGGGAAGAAATTGACCTAACACTTCATATCT  550

seq1  AACATGTAGAGCAGAGATGCATTTATGTGTGTTCAATATCCTGCTTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTAGAGCAGAGATGCATTTATGTGTGTTCAATATCCTGCTTCTGA  600

seq1  GTATTTTTATCCTCTTTAAGTCCAGATTACCCACAGTGCTCCTTGATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTATCCTCTTTAAGTCCAGATTACCCACAGTGCTCCTTGATGAT  650

seq1  GATGATAAAGGAAAGAAAGAGGAAGTGCTTTCTTCTATACAGAGACGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAAAGGAAAGAAAGAGGAAGTGCTTTCTTCTATACAGAGACGCCC  700

seq1  AGTGGTGTTTTGTCTGTGAGGTCTTAACTGGCCTGCAAGGTGAAGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGTTTTGTCTGTGAGGTCTTAACTGGCCTGCAAGGTGAAGCCTTT  750

seq1  TCAGAAGACTTGGCCTATCTGAGCAACTGGGAATCCCAGAAAGTAGCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGACTTGGCCTATCTGAGCAACTGGGAATCCCAGAAAGTAGCTAG  800

seq1  GATGGCCAGAGGGTTGGAATCGGCCCACCTGTACTCTTTGTAGGACCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCAGAGGGTTGGAATCGGCCCACCTGTACTCTTTGTAGGACCCAT  850

seq1  GAGAACATAGTCAAGTACACACACTTCCAGGGGCTCTACATTGCTGCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATAGTCAAGTACACACACTTCCAGGGGCTCTACATTGCTGCTAG  900

seq1  TATCCAGGTCGGAAATGAATTTTAGCATTTGAGACATCAGGATTTATGAC  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATCCAGGTCGGAAATGAATTTTAGCATTTGAGACATCAGGGTTTATGAC  950

seq1  TGAAGAGTTGGCATTTATATTTAAAATGTCAGAGGTGTTTTAAGTCTAAG  1000
      ||| ||| |||| |||||||||||| ||||||||| | ||||||||| ||
seq2  TGAGGAG-TGGC-TTTATATTTAAATTGTCAGAGG-GGTTTAAGTCTTAG  997

seq1  AACGAGAGTGGGTAACTTTGTCATTTAAACAGCAAGGAGACCAAAGTATC  1050
      |||||||||||||| |||  |||||| ||||||||||||| ||| |||||
seq2  AACGAGAGTGGGTACCTTGTTCATTT-AACAGCAAGGAGA-CAAGGTATC  1045

seq1  TTGGGAACACTGGACCTAGTTTCTCAGAGTCTTGGGGGGAAAGAGGACGG  1100
      ||||  |||||||||   ||||||  ||||||   |||| |||||    |
seq2  TTGG--ACACTGGACTAGGTTTCTTCGAGTCT---GGGGGAAGAG--ATG  1088

seq1  CTTCAGCTCCTTGGCGGACTTCGTAGTTGATTAC  1134
      | |||||||  |||||||||   |||||||||||
seq2  CCTCAGCTC--TGGCGGACT--CTAGTTGATTAC  1118


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