BAC Information

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BAC

Clone NameB6Ng01-106I14
Chromosome11 (Build37)
Map Location 60,244,261 - 60,491,910
singlet/doubletdoublet
Overlap gene4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424
Upstream gene1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2
Downstream geneOTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106I14.bB6Ng01-106I14.g
ACCDH914248DH914249
length1,1741,049
definitionDH914248|Mus musculus domesticus DNA, BAC clone: B6Ng01-106I14, 5' end.DH914249|Mus musculus domesticus DNA, BAC clone: B6Ng01-106I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,244,261 - 60,245,435)(60,490,851 - 60,491,910)
sequence
gaattcagatccccagcacctgtgtttaaaaaacaaaggacggtcatgat
catgtaagtctgtaaccctagtgcagccaggatggacactaacagatcac
tgggactcactgccagcccgtccactagctggtgagccccatctcagaag
aaacggtcactccagcctccacacccatgcatgtgcacatactcacacac
aaaagagaaagaacagactgtgcatgtagctcagtggtagaacacttgtg
cacaccgggtcctggagtccacaaattaataataaaagcacacagtagtg
tcacaacaggcctcttcagtgtgtcccctgagtcacaggttgtgcagtgt
tgtttaagagggtttttgcacttacagaagtgaaaaaactatcagtgtgg
ctctattattttaattttatttattcaaagtatgcgggtgtttttcctac
atatatgtctgtgcaccacatgtgtacctgatgctacaaggccagaagag
ggcatcagatcccctgggactggagttacatacagttgtgagccaccatg
caggtgctggcaatgaaacctggacctctgatgaagtaatacatgttcaa
ctgctgaaccacgtctccactctcatctttttttccttaacgactataac
agctcagcttttgaggtggcatctttatgaatggttgtgattttgtattg
cacacatggtttgcatatttttccttatataaattgttcttaatccatgt
gacagaattaactgtctttctagcatatctgaaaattttcttccagagat
atttctagtcctggaaacttcaagaatagatataatgccagttatgggtg
gcacatgccttttaatttctaacacttgggaggtagagacatgctgatct
ctgtgagtccatgaccacccaggacacacagtgaaaccctgttttcaacc
aaaaaaaaacaaaggtagcaagggagcttgaggatccatgaaaggttggc
ccaaggtcaagggagattcagcttctgtatactaactcttggagcctttt
gctggatacatcctagaaacagcgtaacttgttttctgctttgactgtaa
agaattcgagttacctgtgtagaccaattctgctagtagaccgaacatag
ccagtgagctcaaagagaagtttt
gaattcctggtcttcctcagcctccatacctgctgctgtaacaggtgttt
aaggaatcaaaaggagaagaaatgaaggaagacgaataaataaaaaggaa
agaaaacatgattggtgaaaaaaaataagaaatgatacttacattcccta
agtatgagggaggagaaggtttactttagttatgtgggcaagcatagagg
ggtagggatgtctgggagagcccagtgtggacatgagctgacttaagctg
taccatgtgaggagagcagggagtggagaggacaagaggggagagcagtt
gcagcagccaatagccatgaaggtagaaagagtgagtaactacaacttct
gaggcaggaaggaaaatacagcaggcaggtctgctttgatagttagacac
ctcagccttttgtcctgggcttcaaacccaacatttacctataggccagc
tcaaactttcttctttttcttttccatttatttatttatttatttattta
tttatttagttttttggaggcaaaatttctctgtatatctctgaagtgcc
cagaacaacctctgtagaccaggctgatctcaaacgcaaatatcctccag
cctctgcctcctgacaatcaggattgaaggcatgctcctggtacagaact
gttttaaaaacttggctagctagtcagtcactaatccctctaatcccaga
acttgggaggcagagacaggcagacttctgagattcaggccagcatggtc
tacagagtgagttccaggacaaccaggacaaaacagagaaaccatgtcgc
aaaaacaaaacaaaacaaaaatcaatcaaacaaagaaacaaaaaatttgc
tggtctacctagcactgatatataacataaacacccactctgtaaagctt
ttctgcaaaatttattatttttaagatttatgtcttactatgagtgatgt
gtgtcttgtgatgtgtgcatgatccacaccttccaactattgaggtgccc
ttcccaccagaagacagcatggatccttggagtatagtgcaggtagttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60244261_60245435
seq2: B6Ng01-106I14.b_46_1219

seq1  GAATTCAGATCCCCAGCACCTGTGTTTAAAAAACAAAGGACGGTCATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCCCAGCACCTGTGTTTAAAAAACAAAGGACGGTCATGAT  50

seq1  CATGTAAGTCTGTAACCCTAGTGCAGCCAGGATGGACACTAACAGATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGTCTGTAACCCTAGTGCAGCCAGGATGGACACTAACAGATCAC  100

seq1  TGGGACTCACTGCCAGCCCGTCCACTAGCTGGTGAGCCCCATCTCAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCACTGCCAGCCCGTCCACTAGCTGGTGAGCCCCATCTCAGAAG  150

seq1  AAACGGTCACTCCAGCCTCCACACCCATGCATGTGCACATACTCACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGTCACTCCAGCCTCCACACCCATGCATGTGCACATACTCACACAC  200

seq1  AAAAGAGAAAGAACAGACTGTGCATGTAGCTCAGTGGTAGAACACTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAAGAACAGACTGTGCATGTAGCTCAGTGGTAGAACACTTGTG  250

seq1  CACACCGGGTCCTGGAGTCCACAAATTAATAATAAAAGCACACAGTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCGGGTCCTGGAGTCCACAAATTAATAATAAAAGCACACAGTAGTG  300

seq1  TCACAACAGGCCTCTTCAGTGTGTCCCCTGAGTCACAGGTTGTGCAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAGGCCTCTTCAGTGTGTCCCCTGAGTCACAGGTTGTGCAGTGT  350

seq1  TGTTTAAGAGGGTTTTTGCACTTACAGAAGTGAAAAAACTATCAGTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGAGGGTTTTTGCACTTACAGAAGTGAAAAAACTATCAGTGTGG  400

seq1  CTCTATTATTTTAATTTTATTTATTCAAAGTATGCGGGTGTTTTTCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTATTTTAATTTTATTTATTCAAAGTATGCGGGTGTTTTTCCTAC  450

seq1  ATATATGTCTGTGCACCACATGTGTACCTGATGCTACAAGGCCAGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTCTGTGCACCACATGTGTACCTGATGCTACAAGGCCAGAAGAG  500

seq1  GGCATCAGATCCCCTGGGACTGGAGTTACATACAGTTGTGAGCCACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGATCCCCTGGGACTGGAGTTACATACAGTTGTGAGCCACCATG  550

seq1  CAGGTGCTGGCAATGAAACCTGGACCTCTGATGAAGTAATACATGTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTGGCAATGAAACCTGGACCTCTGATGAAGTAATACATGTTCAA  600

seq1  CTGCTGAACCACGTCTCCACTCTCATCTTTTTTTCCTTAACGACTATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAACCACGTCTCCACTCTCATCTTTTTTTCCTTAACGACTATAAC  650

seq1  AGCTCAGCTTTTGAGGTGGCATCTTTATGAATGGTTGTGATTTTGTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCTTTTGAGGTGGCATCTTTATGAATGGTTGTGATTTTGTATTG  700

seq1  CACACATGGTTTGCATATTTTTCCTTATATAAATTGTTCTTAATCCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGGTTTGCATATTTTTCCTTATATAAATTGTTCTTAATCCATGT  750

seq1  GACAGAATTAACTGTCTTTCTAGCATATCTGAAAATTTTCTTCCAGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATTAACTGTCTTTCTAGCATATCTGAAAATTTTCTTCCAGAGAT  800

seq1  ATTTCTAGTCCTGGAAACTTCAAGAATAGATATAATGCCAGTTAT-GGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTCTAGTCCTGGAAACTTCAAGAATAGATATAATGCCAGTTATGGGTG  850

seq1  GCACATGCCTTT--AATTCTAACACTTGGGAGGTAGAGACATGCTGATCT  897
      ||||||||||||  | ||||||||||||||||||||||||||||||||||
seq2  GCACATGCCTTTTAATTTCTAACACTTGGGAGGTAGAGACATGCTGATCT  900

seq1  CTGTGAGTCCATGACCAGCCAAGGACACACAGTGAAACCCTG-TCTCAAC  946
      ||||||||||||||||| || ||||||||||||||||||||| | |||||
seq2  CTGTGAGTCCATGACCA-CCCAGGACACACAGTGAAACCCTGTTTTCAAC  949

seq1  CAAAAAAAAAACAAAAGGTAGCAAGGGAGCTTGAGGATCCATGAAGGGTT  996
      ||||||||||   |||||||||||||||||||||||||||||||| ||||
seq2  CAAAAAAAAA--CAAAGGTAGCAAGGGAGCTTGAGGATCCATGAAAGGTT  997

seq1  GGCCCAAGGTCAAGGGAGATTCAGC-TCTGTATACTAACTC-TGGAGCC-  1043
      ||||||||||||||||||||||||| ||||||||||||||| ||||||| 
seq2  GGCCCAAGGTCAAGGGAGATTCAGCTTCTGTATACTAACTCTTGGAGCCT  1047

seq1  TTTGCTGGGATACACCCCAGAAAACAGCGTAACTTGTATTCTGCTTTGAC  1093
      |||||| ||||||| || || |||||||||||||||| ||||||||||||
seq2  TTTGCT-GGATACATCCTAG-AAACAGCGTAACTTGTTTTCTGCTTTGAC  1095

seq1  TGTAGAGAATTCAGAGTTTACTTGTAGTAGA-CAATACTGGTAAGAGACC  1142
      |||| ||||||| ||| |||| ||| ||||| |||| ||| ||  ||| |
seq2  TGTAAAGAATTC-GAG-TTACCTGT-GTAGACCAATTCTGCTAGTAGA-C  1141

seq1  CGAACATAGCCAGTGAGGTCAAAGAGAAGTTTT  1175
      ||||||||||||||||| |||||||||||||||
seq2  CGAACATAGCCAGTGAGCTCAAAGAGAAGTTTT  1174

seq1: chr11_60490851_60491910
seq2: B6Ng01-106I14.g_70_1115 (reverse)

seq1  CAACTACCTGCAACTCTACTTCCAAAGGATCCCATGCTGTCTTCTGGTGT  50
      ||||||||||| ||| ||||  | |||||| |||||||||||||||||| 
seq2  CAACTACCTGC-ACTATACT--CCAAGGAT-CCATGCTGTCTTCTGGTGG  46

seq1  GAAGGGCACCTACATATGTTTGGAAGGTGTGGGTTCATGCACACATTCAC  100
      |||||||||||  |||   ||||||||||| || ||||||||||| ||||
seq2  GAAGGGCACCTCAATA--GTTGGAAGGTGT-GGATCATGCACACA-TCAC  92

seq1  AA-ACACACAGTACTCATAGT-AGACATAAATCTTAAAAATAATAAATTT  148
      || |||||||  ||||||||| ||||||||||||||||||||||||||||
seq2  AAGACACACATCACTCATAGTAAGACATAAATCTTAAAAATAATAAATTT  142

seq1  TTGGCAGAAATGATTTACAGAGTGGGAGGGTATGTTATATATTAGTCCTT  198
      |  ||||||| | ||||||||||||| |  |||||||||||| ||| || 
seq2  T--GCAGAAAAGCTTTACAGAGTGGGTGTTTATGTTATATATCAGTGCTA  190

seq1  GGTAGGCTAGCGAATTTTTTCTTTGTTTGTTTGTTTGATTGATTTTTGTT  248
      ||||| | ||| |||||    ||||||| |||||||||||||||||||||
seq2  GGTAGACCAGCAAATTT----TTTGTTTCTTTGTTTGATTGATTTTTGTT  236

seq1  TTGTTTTGTTTTTGCGACATGGTTTCTCTGTTTTCTCCTGGTTGTCCTGG  298
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGTTTTGTTTTTGCGACATGGTTTCTCTGTTTTGTCCTGGTTGTCCTGG  286

seq1  AACTCACTCTGTAGACCATGCTGGCCTGGAACTCAGAAGTCTGCCTGTCT  348
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  AACTCACTCTGTAGACCATGCTGGCCTGAATCTCAGAAGTCTGCCTGTCT  336

seq1  CTGCCTCCCAAGTTCTGGGATTAGAGGGATTAGTGACTGACTAGATAGCC  398
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGCCTCCCAAGTTCTGGGATTAGAGGGATTAGTGACTGACTAGCTAGCC  386

seq1  AAGTTTTTAAAACAGTTCTGTACCAGGAGCATGCCTTCAATCCTGGTACT  448
      ||||||||||||||||||||||||||||||||||||||||||||| |  |
seq2  AAGTTTTTAAAACAGTTCTGTACCAGGAGCATGCCTTCAATCCTGATTGT  436

seq1  CAGGAGGCAGAGGCTGGAGGATATTTGCGTTTGAGGTCAGCCTGGTCTAC  498
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGGAGGCAGAGGCTGGAGGATATTTGCGTTTGAGATCAGCCTGGTCTAC  486

seq1  AGAGGTTGTTCTTGGCTCTTCACAGATATACA-AGAAACTTTGCCTCCAA  547
      |||||||||||| ||| ||||| ||||||||| ||||| |||||||||||
seq2  AGAGGTTGTTCTGGGCACTTCAGAGATATACAGAGAAATTTTGCCTCCAA  536

seq1  AAAACTAACTAACTAACTAAATAAATAAATAAATAAATGGAAAAGATAAA  597
      |||||||| ||| ||| ||||||||||||||||||||||||      |||
seq2  AAAACTAAATAAATAAATAAATAAATAAATAAATAAATGGA------AAA  580

seq1  GAAAAAGAAGAAAGTATGAGGTGTCCT-TAGGTAAATGTTGGGTTTGAAG  646
      ||||||||||||||| |||| || ||| ||||||||||||||||||||||
seq2  GAAAAAGAAGAAAGTTTGAGCTGGCCTATAGGTAAATGTTGGGTTTGAAG  630

seq1  CCCAGGACAAAAGGCTGAGGTGTCTAACTATCAAAGCAGACCTGCCTGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACAAAAGGCTGAGGTGTCTAACTATCAAAGCAGACCTGCCTGCT  680

seq1  GTATTTTCCTTCCTCCCTTGGAAGTTGTAGTTACTCACTCTTTCTACCTT  746
      |||||||||||||| |||  ||||||||||||||||||||||||||||||
seq2  GTATTTTCCTTCCTGCCTCAGAAGTTGTAGTTACTCACTCTTTCTACCTT  730

seq1  CATGGCTATTGGCTGCTGCAACTGCTCTCCCCTCTTGTCCTCTCCACTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTATTGGCTGCTGCAACTGCTCTCCCCTCTTGTCCTCTCCACTCC  780

seq1  CTGCTCTCCTCACATGGTACAGCTTAAGTCAGCTCATGTCCACACTGGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCCTCACATGGTACAGCTTAAGTCAGCTCATGTCCACACTGGGC  830

seq1  TCTCCCAAATATCCCTACCGCTCT-TGCTTGCCCATATAACCAAAATAAA  895
      ||||||| | ||||||||| |||| |||||||||| ||||| ||| ||||
seq2  TCTCCCAGACATCCCTACCCCTCTATGCTTGCCCACATAACTAAAGTAAA  880

seq1  CCTTCTCCTCCCTCATACTTAGGGAATGTAAGTATCTTTTCTTA-TTTTT  944
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  CCTTCTCCTCCCTCATACTTAGGGAATGTAAGTATCATTTCTTATTTTTT  930

seq1  TTCACCAATCATGTTTTCTTTCTTTTTTATTTATTCGTCCTCCTTCATTT  994
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  TTCACCAATCATGTTTTCTTTCCTTTTTATTTATTCGTCTTCCTTCATTT  980

seq1  CTTCTCCTTTTGATTCCTAAAACACCTGTTACAGCAGCAGGTAAGGAGGC  1044
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  CTTCTCCTTTTGATTCCTTAAACACCTGTTACAGCAGCAGGTATGGAGGC  1030

seq1  TGAGAAAGACCAGGAA  1060
      |||| |||||||||||
seq2  TGAGGAAGACCAGGAA  1046