BAC Information

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BAC

Clone NameB6Ng01-106M11
Chromosome11 (Build37)
Map Location 57,851,452 - 58,005,949
singlet/doubletdoublet
Overlap geneLarp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605
Downstream geneIgtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106M11.bB6Ng01-106M11.g
ACCDH914423DH914424
length1,1221,118
definitionDH914423|Mus musculus domesticus DNA, BAC clone: B6Ng01-106M11, 5' end.DH914424|Mus musculus domesticus DNA, BAC clone: B6Ng01-106M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,004,825 - 58,005,949)(57,851,452 - 57,852,596)
sequence
gaattccaacagaaagctaacatgaaggcaaaaaatcacagtctagaccc
atttctttttttcttgaactttattgaggcataattgacattaaaaaaat
tacagggtttggtggatacacacctaagtttgttctttaagctttgcaaa
atgctaatattttaattgcatctctttttctgcaaagttatcattggtag
aatccttaggggtggcaccctctgggctagggttcgtcaggggtgggagg
ccttgaggtggggtcatctagacctcaacagacagtatttgtgactagct
atggaaaacacacagagtcatgaacccaaataacttaaattgaacaaaca
gtgcatggctctccacaaagggtgggaagattagatgtcaaacctgcgac
caatggctaagtgaaacatgcctatttaacatctcaaagtgagcctggct
gccaggttctcccagcatcccttagtccatactggtttcatggtatagct
gccgttccctatatactccaactgctaacacagtctttttgtctaccctt
taccttcctggccttttggtctcctggtctcctgactctcccctcccctt
ctcctcacacgacccagctcagggtcctgttcactctggactcttctaga
tgtccttgcctggctctgctctccctcgcatctacaattaaccttctcct
ctatcatacctaggagcagtcatggtctcctttttttctttttttcttcc
ccccaccctccaatcaagggtctgaatgatctaaattattgatggaaatt
tcatacaaagaaaaacctccctttgccagggtagtggcagcttttactcc
aatacccaggaggcagaggcaggcctgtgagttcaaggttacatagtgag
tttctagagttgggtagccaggactacacaatgagaccctatgtcagaca
gagagagagagagagagagagagagagagagagagagatacctcccttca
actttaaagaaattaaattttatgggtgctctagctgcatgccagaagag
ggtaccaggtcctatacagatggttttgaccaccaatttggtggctggga
actgaacttaggacctctggaa
tggtaggctgtgacaggggaatggctggaatgtagaggctgctttgggct
acaagcaagacccttccttaaaaatttttgagaaaatagcttttaaaggt
tttattacattgattgattgattgattgattgattgattgattgattggg
gaccagtaaggggaacaccatggcatgcctgtggaaatcagaggacagcc
tgtgagagctgatctctatttcctggcgaagtatgtttccctagaccaag
aaacttgaaaagaccagtgtctggaaacttttgctctctttttcagaggt
gattttcagtatacttcacttccagtccttgtgtatggggttcctgttgt
aaactttgttactagccctggggcttgctttcctgctagcatgtatcaat
gctgttgagtacatgaagaaatgactccagttatctccagttatagctca
ggtgggcactgcgctggccttgggctgaattggatgaagatctttttatt
tttttgtaattaagtaaagacagcagcaggcagaaaggaggggatcttct
gtgttctgcaaacgccactaactcttgggccttacctgatacataccctt
tggggtttctaatcaaccacccttcccattaatattgtgtgccttcacta
tgaaaactgttaacaaatttgcttcataaagttttattgatggcatttat
cccatggtttaacatgttaattatactgtaataaacatggctttaatatt
aaactttttccttattatccaaagtcaccacagtccatttcagtaaatat
aaaatatatgcttaatactttgtacaatactggtttttggtccaaacaaa
ctggatcagaaaagccataattcaactttaagaatccccattttttttaa
gatttccaatggatttaggcaactttgatatgggatttacatataaatct
ttgtctttgtgtatccctggctgtctggactgcttgtagactagctgcct
caaatttcagaagatcctttctcttgcactagtgctggcataaaggcatc
tacagcatctagctcaggtggaatctttatttgacagtcagggaattcta
gatgtcggtgttatctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58004825_58005949
seq2: B6Ng01-106M11.b_45_1166 (reverse)

seq1  TTCCAGAGGTCCTAAGTTCAGTTCCCAGCCACCAAA-TGGTGGTTCACAA  49
      |||||||||||||||||||||||||||||||||||| |||||| ||| ||
seq2  TTCCAGAGGTCCTAAGTTCAGTTCCCAGCCACCAAATTGGTGG-TCAAAA  49

seq1  CCATCTGTGATAGGACTTGGTACCCTCTTCTGGCATGCAGCTAGAGCACT  99
      |||||||| ||||||| |||||||||||||||||||||||||||||||| 
seq2  CCATCTGT-ATAGGACCTGGTACCCTCTTCTGGCATGCAGCTAGAGCACC  98

seq1  CATAAAATTTAATTTTCTTTTAAAGTTGAAGGGAGGTATTCTCTCTCTCT  149
      |||||||||||||||   |||||||||||||||||||| |||||||||||
seq2  CATAAAATTTAATTT--CTTTAAAGTTGAAGGGAGGTA-TCTCTCTCTCT  145

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGACATAGGGTCTCATTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGACATAGGGTCTCATTGT  195

seq1  GTAGTCCTGGCTACCCAACTCT-GGAACTCACTATGTAGCCTTGAACTCA  248
      |||||||||||||||||||||| | ||||||||||||| |||||||||||
seq2  GTAGTCCTGGCTACCCAACTCTAGAAACTCACTATGTAACCTTGAACTCA  245

seq1  CAGGCCTGCCTCTGCCTCCTGGGTATTGGAGTAAAAGCTGCCACTACCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGCCTCTGCCTCCTGGGTATTGGAGTAAAAGCTGCCACTACCCT  295

seq1  GGCAAAGGGAGGTTTTTCTTTGTATGAAATTTCCATCAATAATTTAGATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGGAGGTTTTTCTTTGTATGAAATTTCCATCAATAATTTAGATC  345

seq1  ATTCAGACCCTTGATTGGAGGGTGGGGGGAAGAAAAAAAGAAAAAAAGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGACCCTTGATTGGAGGGTGGGGGGAAGAAAAAAAGAAAAAAAGGA  395

seq1  GACCATGACTGCTCCTAGGTATGATAGAGGAGAAGGTTAATTGTAGATGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGACTGCTCCTAGGTATGATAGAGGAGAAGGTTAATTGTAGATGC  445

seq1  GAGGGAGAGCAGAGCCAGGCAAGGACATCTAGAAGAGTCCAGAGTGAACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGCAGAGCCAGGCAAGGACATCTAGAAGAGTCCAGAGTGAACA  495

seq1  GGACCCTGAGCTGGGTCGTGTGAGGAGAAGGGGAGGGGAGAGTCAGGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTGAGCTGGGTCGTGTGAGGAGAAGGGGAGGGGAGAGTCAGGAGA  545

seq1  CCAGGAGACCAAAAGGCCAGGAAGGTAAAGGGTAGACAAAAAGACTGTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGACCAAAAGGCCAGGAAGGTAAAGGGTAGACAAAAAGACTGTGT  595

seq1  TAGCAGTTGGAGTATATAGGGAACGGCAGCTATACCATGAAACCAGTATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTGGAGTATATAGGGAACGGCAGCTATACCATGAAACCAGTATG  645

seq1  GACTAAGGGATGCTGGGAGAACCTGGCAGCCAGGCTCACTTTGAGATGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGGGATGCTGGGAGAACCTGGCAGCCAGGCTCACTTTGAGATGTT  695

seq1  AAATAGGCATGTTTCACTTAGCCATTGGTCGCAGGTTTGACATCTAATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGCATGTTTCACTTAGCCATTGGTCGCAGGTTTGACATCTAATCT  745

seq1  TCCCACCCTTTGTGGAGAGCCATGCACTGTTTGTTCAATTTAAGTTATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCTTTGTGGAGAGCCATGCACTGTTTGTTCAATTTAAGTTATTT  795

seq1  GGGTTCATGACTCTGTGTGTTTTCCATAGCTAGTCACAAATACTGTCTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCATGACTCTGTGTGTTTTCCATAGCTAGTCACAAATACTGTCTGT  845

seq1  TGAGGTCTAGATGACCCCACCTCAAGGCCTCCCACCCCTGACGAACCCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTAGATGACCCCACCTCAAGGCCTCCCACCCCTGACGAACCCTA  895

seq1  GCCCAGAGGGTGCCACCCCTAAGGATTCTACCAATGATAACTTTGCAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGGGTGCCACCCCTAAGGATTCTACCAATGATAACTTTGCAGAA  945

seq1  AAAGAGATGCAATTAAAATATTAGCATTTTGCAAAGCTTAAAGAACAAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATGCAATTAAAATATTAGCATTTTGCAAAGCTTAAAGAACAAAC  995

seq1  TTAGGTGTGTATCCACCAAACCCTGTAATTTTTTTAATGTCAATTATGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGTGTATCCACCAAACCCTGTAATTTTTTTAATGTCAATTATGCC  1045

seq1  TCAATAAAGTTCAAGAAAAAAAGAAATGGGTCTAGACTGTGATTTTTTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAGTTCAAGAAAAAAAGAAATGGGTCTAGACTGTGATTTTTTGC  1095

seq1  CTTCATGTTAGCTTTCTGTTGGAATTC  1125
      |||||||||||||||||||||||||||
seq2  CTTCATGTTAGCTTTCTGTTGGAATTC  1122

seq1: chr11_57851452_57852596
seq2: B6Ng01-106M11.g_81_1198

seq1  TGGTAGGCTGTGACAGGGGAATGGCTGGAATGTAGAGGCTGCTTTGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGCTGTGACAGGGGAATGGCTGGAATGTAGAGGCTGCTTTGGGCT  50

seq1  ACAAGCAAGACCCTTCCTTAAAAATTTTTGAGAAAATAGCTTTTAAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAGACCCTTCCTTAAAAATTTTTGAGAAAATAGCTTTTAAAGGT  100

seq1  TTTATTAC----ATTGATTGATTGATTGATTGATTGATTGATTGATTGGG  146
      ||||||||    ||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGGG  150

seq1  GACCAGTAAGGGGAACACCATGGCATGCCTGTGGAAATCAGAGGACAGCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTAAGGGGAACACCATGGCATGCCTGTGGAAATCAGAGGACAGCC  200

seq1  TGTGAGAGCTGATCTCTATTTCCTGGCGAAGTATGTTTCCCTAGACCAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGCTGATCTCTATTTCCTGGCGAAGTATGTTTCCCTAGACCAAG  250

seq1  AAACTTGAAAAGACCAGTGTCTGGAAACTTTTGCTCTCTTTTTCAGAGGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAAAAGACCAGTGTCTGGAAACTTTTGCTCTCTTTTTCAGAGGT  300

seq1  GATTTTCAGTATACTTCACTTCCAGTCCTTGTGTATGGGGTTCCTGTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCAGTATACTTCACTTCCAGTCCTTGTGTATGGGGTTCCTGTTGT  350

seq1  AAACTTTGTTACTAGCCCTGGGGCTTGCTTTCCTGCTAGCATGTATCAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGTTACTAGCCCTGGGGCTTGCTTTCCTGCTAGCATGTATCAAT  400

seq1  GCTGTTGAGTACATGAAGAAATGACTCCAGTTATCTCCAGTTATAGCTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGAGTACATGAAGAAATGACTCCAGTTATCTCCAGTTATAGCTCA  450

seq1  GGTGGGCACTGCGCTGGCCTTGGGCTGAATTGGATGAAGATCTTTTTATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCACTGCGCTGGCCTTGGGCTGAATTGGATGAAGATCTTTTTATT  500

seq1  TTTTTGTAATTAAGTAAAGACAGCAGCAGGCAGAAAGGAGGGGATCTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAATTAAGTAAAGACAGCAGCAGGCAGAAAGGAGGGGATCTTCT  550

seq1  GTGTTCTGCAAACGCCACTAACTCTTGGGCCTTACCTGATACATACCCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGCAAACGCCACTAACTCTTGGGCCTTACCTGATACATACCCTT  600

seq1  TGGGGTTTCTAATCAACCACCCTTCCCATTAATATTGTGTGCCTTCACTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTCTAATCAACCACCCTTCCCATTAATATTGTGTGCCTTCACTA  650

seq1  TGAAAACTGTTAACAAATTTGCTTCATAAAGTTTTATTGATGGCATTTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTGTTAACAAATTTGCTTCATAAAGTTTTATTGATGGCATTTAT  700

seq1  CCCATGGTTTAACATGTTAATTATACTGTAATAAACATGGCTTTAATATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGTTTAACATGTTAATTATACTGTAATAAACATGGCTTTAATATT  750

seq1  AAACTTTTTCCTTATTATCCAAAGTCACCACAGTCCATTTCAGTAAATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTTCCTTATTATCCAAAGTCACCACAGTCCATTTCAGTAAATAT  800

seq1  AAAAATATATGCTTAATACTTTGTACAATACTGGTTTTTGGTCCAAACAA  846
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  -AAAATATATGCTTAATACTTTGTACAATACTGGTTTTTGGTCCAAAC-A  848

seq1  AACTGGATCAGAAAAGCCAATAAATTCAACTTTAAGAATCCCCAATTTTT  896
      |||||||||||||||||||   ||||||||||||||||||||||  ||||
seq2  AACTGGATCAGAAAAGCCA--TAATTCAACTTTAAGAATCCCCA--TTTT  894

seq1  TTTAAAGATTTCCAAATGGATTTAGGCAACTTTGAATAATGGGATTTACA  946
      ||| ||||||||| |||||||||||||||||||||   ||||||||||||
seq2  TTTTAAGATTTCC-AATGGATTTAGGCAACTTTGA--TATGGGATTTACA  941

seq1  TAATAAAATCTTTGTCTTTGTGTATCCCTGGCTGTCCTGGAACTTGCTTT  996
      ||   |||||||||||||||||||||||||||||| |||||   ||| ||
seq2  TA--TAAATCTTTGTCTTTGTGTATCCCTGGCTGT-CTGGA--CTGC-TT  985

seq1  GTAGACTAAGCTGCCCTCAAATTTCCAGAGATCCTTCTCTCTGCCACCTA  1046
      ||||||| ||||| |||||||||||   |||||||| |||||  |||   
seq2  GTAGACT-AGCTG-CCTCAAATTTCAGAAGATCCTT-TCTCTTGCAC--T  1030

seq1  AGTGCTGGCATTAAAGGCATCTACCAGCATACCTAGCTCAGGTGGAGATC  1096
      |||||||||| |||||||||||| ||||||  |||||||||||||| |||
seq2  AGTGCTGGCA-TAAAGGCATCTA-CAGCAT--CTAGCTCAGGTGGA-ATC  1075

seq1  TTTATTTAGACCAGTCAGGGAATTACTAGATGTTCGGTGTCTTATCTGG  1145
      ||||||| || ||||||||||||| ||||||| ||||||  ||||||||
seq2  TTTATTT-GA-CAGTCAGGGAATT-CTAGATG-TCGGTG--TTATCTGG  1118