BAC Information

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BAC

Clone NameB6Ng01-107A04
Chromosome11 (Build37)
Map Location 41,624,514 - 41,770,592
singlet/doubletdoublet
Overlap geneGabrg2
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
Downstream geneGabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107A04.bB6Ng01-107A04.g
ACCDH914593DH914594
length4511,146
definitionDH914593|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A04, 5' end.DH914594|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,770,136 - 41,770,592)(41,624,514 - 41,625,670)
sequence
ttaaagacacatcagtgtcagtatataaaactaatgtctcctattacatg
tgatgttttgaagtaaatataaaaaacatcaaatgattcgtgaaaattaa
atgtgagggagaaaatgtgaccaagaacatagggtcagtactttaactgc
aatgaatatgtttattttctgtgaatgggtgattcatctgtgctacattt
gcctttatagaatgctctgctcaatgttgcagacctaaaatcttaggtat
gtatcatacaaagaaaagcaaatacctggagaaaacaatgtttctttctc
tttatttcattaaaagaatattactgagaaggtcacaacattttgccttt
gaaaaaagcttggaaagaattttatttggtgtgtgtgtgcatctctctct
ctctcaatctatctctgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgt
g
gaattctttcaaaatgttaaaaaaaaaaaaaaaccacgtacttggtattc
ttttcctaagagtcaaggggctaaggtcaaggaatgatgggattgttaac
aaggaacctgaaatgaataactgaattgatacgtacatatatttaaaaaa
aaaaaatcccaccaccaccaccaacaacaacaacaaaaactggacttttg
gtctgcaagagataagctagcagaaagaaagcatttcctttctttagaat
tgtcttttttttctctttttctttttaatttaatctttttttatttccca
gattccatccccctcccattccaccctttgaggggttccacatccacaag
catgtccctaaccccacaccccccaaccccaccagacctcctcattccgt
ggggcctccagtttcttgagggttaggtgaatcttctctgactgagtcca
aacctggtggtacttggatgtatatgtgttgggggcctatatcagctggt
ctatgctgcctggttggcggcccagtgtctgagagatcttggggttccaa
gttagttgagattgctggtcctcttataggatcacactcctcctcagctt
cttccagcatttccctaattcaaccacagaggtcagctgcttctgtccat
tagttgggtgtaaatatctgcatctgactctttcagctgctggtctggtt
ttccagagggcagtttgatagtcccctttttgtgagcaaaacatagccct
cagtaatagtgtcaggccttagggccttcccttgagctggatcccaattt
gggtctatcgccaacctcttttcctcagggtcttcttcatttttattccc
gaggttctttcttttctagcaagaactgagctgtcccgggatctcttaag
agcgaacacagcactccaaggttttttctaacaagatttatgattcagtt
ggaaatccatgaagagaagaacacagctctttgaaatttttcataagttc
ttttagaattttttcaataagtattttctgaaagagcaacacggttcttt
tgactgttttcagcagctatctcaagaaagctgtctgatagggaacaggt
cttcaagaattttttctgcttcctgaatttgacagaaaactaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41770136_41770592
seq2: B6Ng01-107A04.b_48_504 (reverse)

seq1  CACACACACACACACACACACACACACACAAACACAGAGATAGATTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACAAACACAGAGATAGATTGAGA  50

seq1  GAGAGAGAGATGCACACACACACCAAATAAAATTCTTTCCAAGCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGATGCACACACACACCAAATAAAATTCTTTCCAAGCTTTTTT  100

seq1  CAAAGGCAAAATGTTGTGACCTTCTCAGTAATATTCTTTTAATGAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCAAAATGTTGTGACCTTCTCAGTAATATTCTTTTAATGAAATAA  150

seq1  AGAGAAAGAAACATTGTTTTCTCCAGGTATTTGCTTTTCTTTGTATGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAAACATTGTTTTCTCCAGGTATTTGCTTTTCTTTGTATGATA  200

seq1  CATACCTAAGATTTTAGGTCTGCAACATTGAGCAGAGCATTCTATAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTAAGATTTTAGGTCTGCAACATTGAGCAGAGCATTCTATAAAGG  250

seq1  CAAATGTAGCACAGATGAATCACCCATTCACAGAAAATAAACATATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAGCACAGATGAATCACCCATTCACAGAAAATAAACATATTCAT  300

seq1  TGCAGTTAAAGTACTGACCCTATGTTCTTGGTCACATTTTCTCCCTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTAAAGTACTGACCCTATGTTCTTGGTCACATTTTCTCCCTCACA  350

seq1  TTTAATTTTCACGAATCATTTGATGTTTTTTATATTTACTTCAAAACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTCACGAATCATTTGATGTTTTTTATATTTACTTCAAAACATC  400

seq1  ACATGTAATAGGAGACATTAGTTTTATATACTGACACTGATGTGTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAATAGGAGACATTAGTTTTATATACTGACACTGATGTGTCTTTA  450

seq1  AGAATTC  457
      |||||||
seq2  AGAATTC  457

seq1: chr11_41624514_41625670
seq2: B6Ng01-107A04.g_68_1213

seq1  GAATTCTTTCAAAATGTTAAAAAAAAAAAAAAACCACGTACTTGGTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAAATGTTAAAAAAAAAAAAAAACCACGTACTTGGTATTC  50

seq1  TTTTCCTAAGAGTCAAGGGGCTAAGGTCAAGGAATGATGGGATTGTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAAGAGTCAAGGGGCTAAGGTCAAGGAATGATGGGATTGTTAAC  100

seq1  AAGGAACCTGAAATGAATAACTGAATTGATACGTACATATATTTAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCTGAAATGAATAACTGAATTGATACGTACATATATTTAAAAAA  150

seq1  AAAAAATCCCACCACCACCACCAACAACAACAACAAAAACTGGACTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCCCACCACCACCACCAACAACAACAACAAAAACTGGACTTTTG  200

seq1  GTCTGCAAGAGATAAGCTAGCAGAAAGAAAGCATTTCCTTTCTTTAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAAGAGATAAGCTAGCAGAAAGAAAGCATTTCCTTTCTTTAGAAT  250

seq1  TGTCTTTTTTTTCTCTTTTTCTTTTTAATTTAATCTTTTTTTATTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTTTTCTCTTTTTCTTTTTAATTTAATCTTTTTTTATTTCCCA  300

seq1  GATTCCATCCCCCTCCCATTCCACCCTTTGAGGGGTTCCACATCCACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCATCCCCCTCCCATTCCACCCTTTGAGGGGTTCCACATCCACAAG  350

seq1  CATGTCCCTAACCCCACACCCCCCAACCCCACCAGACCTCCTCATTCCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCCTAACCCCACACCCCCCAACCCCACCAGACCTCCTCATTCCGT  400

seq1  GGGGCCTCCAGTTTCTTGAGGGTTAGGTGAATCTTCTCTGACTGAGTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTCCAGTTTCTTGAGGGTTAGGTGAATCTTCTCTGACTGAGTCCA  450

seq1  AACCTGGTGGTACTTGGATGTATATGTGTTGGGGGCCTATATCAGCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTGGTACTTGGATGTATATGTGTTGGGGGCCTATATCAGCTGGT  500

seq1  CTATGCTGCCTGGTTGGCGGCCCAGTGTCTGAGAGATCTTGGGGTTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGCCTGGTTGGCGGCCCAGTGTCTGAGAGATCTTGGGGTTCCAA  550

seq1  GTTAGTTGAGATTGCTGGTCCTCTTATAGGATCACACTCCTCCTCAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTGAGATTGCTGGTCCTCTTATAGGATCACACTCCTCCTCAGCTT  600

seq1  CTTCCAGCATTTCCCTAATTCAACCACAGAGGTCAGCTGCTTCTGTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCATTTCCCTAATTCAACCACAGAGGTCAGCTGCTTCTGTCCAT  650

seq1  TAGTTGGGTGTAAATATCTGCATCTGACTCTTTCAGCTGCTGGTCTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGGTGTAAATATCTGCATCTGACTCTTTCAGCTGCTGGTCTGGTT  700

seq1  TTCCAGAGGGCAGTTTGATAGTCCCCTTTTTGTGAGCAAAACATAG-CCT  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCCAGAGGGCAGTTTGATAGTCCCCTTTTTGTGAGCAAAACATAGCCCT  750

seq1  CAGTAATAGTGTCAGGCCTTAGGGCCTTCCCTTGAGCTGGATCCCAATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATAGTGTCAGGCCTTAGGGCCTTCCCTTGAGCTGGATCCCAATTT  800

seq1  GGGTCTATCGCCAACCTCTTTTCCTCAGGGTCTTCTTCATTTTTATTCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTATCGCCAACCTCTTTTCCTCAGGGTCTTCTTCATTTTTATTCCC  850

seq1  GAGGTTCTTTCTTTTCTAGCAAGAACTGAGCTGTCCCGGGATCTCTAAAG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGGTTCTTTCTTTTCTAGCAAGAACTGAGCTGTCCCGGGATCTCTTAAG  900

seq1  AGCGAACACAGCACTTCAAGGTTTTTTTCTAACAAGATTTATGATTTCAG  949
      ||||||||||||||| ||||| |||||||||||||||||||||| |||||
seq2  AGCGAACACAGCACTCCAAGG-TTTTTTCTAACAAGATTTATGA-TTCAG  948

seq1  TTGGAAAATCCATGAAGAG-AGAACACAGCTCTTTTGAAAATTTTTCAT-  997
      |||| |||||||||||||| |||||||||||||||   ||||||||||| 
seq2  TTGG-AAATCCATGAAGAGAAGAACACAGCTCTTT--GAAATTTTTCATA  995

seq1  AGCTCTTTTAGAATTTTTTCAAATAGTATTTTCTGAGAGAGCAAACACGG  1047
      || |||||||||||||||||||  |||||||||||| ||||| |||||||
seq2  AGTTCTTTTAGAATTTTTTCAATAAGTATTTTCTGAAAGAGC-AACACGG  1044

seq1  TTCTTTTTGACTGTTTTCAAGCAGCTATCTCGAGAAGGCTGTCTGATAGG  1097
      ||| |||||||||||||| |||||||||||| |||| |||||||||||||
seq2  TTC-TTTTGACTGTTTTC-AGCAGCTATCTCAAGAAAGCTGTCTGATAGG  1092

seq1  TGAACACAGTTCTTCAAGAATTTTTTTCTGGCTTTCTGATTTTGATCAGA  1147
       ||  |||| |||||||||| |||||||| |||| |||| ||||| ||||
seq2  -GA--ACAGGTCTTCAAGAA-TTTTTTCT-GCTTCCTGAATTTGA-CAGA  1136

seq1  AAACTAAAAA  1157
      ||||||||||
seq2  AAACTAAAAA  1146