BAC Information

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BAC

Clone NameB6Ng01-107K15
Chromosome11 (Build37)
Map Location 90,996,513 - 91,182,449
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107K15.bB6Ng01-107K15.g
ACCDH915066DH915067
length1,171812
definitionDH915066|Mus musculus domesticus DNA, BAC clone: B6Ng01-107K15, 5' end.DH915067|Mus musculus domesticus DNA, BAC clone: B6Ng01-107K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,181,231 - 91,182,449)(90,996,513 - 90,997,320)
sequence
gaattcttcataccaagtttctgtatcacagacatgtatatgtgtgagtg
tgagcatggcatatgtatatgtgtgagtgtgagcatggcatatgtatatg
tgtgagtgtgagcatggcatgtgtatatgtgtgaatgtgagcatggcata
tgtgcacttggcaggggagaggggagatgcacatgcggaggatgacagct
agtgccattgatctctatatgacttaatgtaggaaagtttttaattgaca
acagtacttatataataatgttttttctattttatgtttcctatttctat
tctcataatcatatcataaacttctttcaaataaccgtactgaaattatt
tagcatgcctaggagggcggagaatattgaaaaccagtgtagtttaagag
tgtggacactcttccctgaagcacgtatgacacaatagtcaagaaaataa
accaaagacatagccagggtcattgcagcagactctactataactggtga
tttcactgaaagtttaggtcaggcttttgcattaaataagtaaatgtttc
atatgtcatttctaagagtttttttttatgtgtatgcctttacatattga
tatatccattcattagcagttaattgttcatcatataacaagtgctgaaa
attaattttaaagcactgaaataaacatttacatcctccaaccaccctgt
atgtgactttggtttccctctccaaacactggagtgcggtgcctctccta
aatactaagtagctttagaagatcgtccttaattagtttttccaagccca
gcatcatcccagtgagctctgtttagaagattcagaaatctgaaaaagat
ttggttaaataagttgagtgaatattttaagtgagatttctacttcttac
cactttgtctacatgctaattttaataaatgttaccattggaggagtgcg
tatgcatgaatgcactaagtttgtgtttgtagaaaacaattcatgctaaa
gtatacaaatagcatatattttagtattaagtaaataaatgtccaaacta
aaaaatcaaaacgttaaacaatacgtattttagctctaatataaactcag
tttcatcatgctcccttcagcaatagggattaagtgataggctgaagatc
tgtaaatcaaggaaattttgc
gaattctttctttcacctcttgatacagaaacaaacgtgtcttcatttct
cttctattgctgcgataaagctttctgatgaaagcggtttgaaagagaaa
gtttagtttaggcttatggcttgagaaggacggacaacaggtggtgacag
tacggtggcagaagcagcacactgactggtcacacagcaaccacacagga
agcagagagtgagcaggaagtgaggtcagccaataatgcctcaagggcag
ccctcagctacacacatcatccagcaatctcctcattcaataccaccagt
tgaggaccaagtatttaagcacataaacctatggggggggggcatttccc
actcaaaccacatcaaaccatcttagcactcattagaaatgagcttgcct
gacccaaagttcacttgaattatttttttaaagtgagtggttgtcatggt
tgaatatgcttggcgaagggagtggcactattagaggtgtggccttgttg
gaatagatatgtcactgtaggtgtgggctttaagtccatatcctaactgt
ctgaaagtcagtattttgctagcagctttcagatgaagatgtagaactcc
cagctcctcctataccatgtctgcctgaatgttgccatgttccctccttg
atgatactggactgaacctcttaatctgtaagccagccccaaataaatgt
tgtccatataagtctttgccttggtcatgggtgtctgttacagcagtaag
aaccctaagacagtgttttttggtttttgttttttgttttgttctgtttg
gttttccaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_91181231_91182449
seq2: B6Ng01-107K15.b_47_1217 (reverse)

seq1  GCAAAATTATTCCTTTTGATTTATCAAGTACTCTCAGCCTTAATTCACTT  50
      |||||||  ||||  ||||||||   ||  || |||||||    ||||||
seq2  GCAAAAT--TTCC--TTGATTTA--CAGATCT-TCAGCCT---ATCACTT  40

seq1  AAAATTTCACCTAATTGCCTGAAGGGAGCATATGGAAATGATAACTGTAG  100
      ||    || ||| |||| |||||||||||||      |||| ||||| ||
seq2  AA----TC-CCT-ATTG-CTGAAGGGAGCAT-----GATGA-AACTG-AG  76

seq1  TTTTTAATATTATGAAGCTAAAAATAACTGTATTGTTTTACTGTTTTGTA  150
      |||   ||||||   |||| ||||||   ||||||||| || ||||||  
seq2  TTT---ATATTA--GAGCT-AAAATA--CGTATTGTTTAAC-GTTTTG--  115

seq1  TTTTTTTAGTGTGTGACATATATTTTACTATATACTTAAAATATTATGCT  200
       ||||||||| || ||||| || ||||||  |||| ||||||| ||||||
seq2  ATTTTTTAGTTTG-GACATTTA-TTTACTTAATAC-TAAAATA-TATGCT  161

seq1  ATATTGTATACTTTTAGCATGAAATTGTTTTCTACAAACACAAACTTAGT  250
      || |||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  AT-TTGTATAC-TTTAGCATG-AATTGTTTTCTACAAACACAAACTTAGT  208

seq1  GCATTCATGCATACGCACTTCCTCCAATGGTTAACATTTATTAAAATTAG  300
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  GCATTCATGCATACGCAC-TCCTCCAATGG-TAACATTTATTAAAATTAG  256

seq1  CATGTTAGACAAAGTGGTAAGAAGTAGGAAATCTCACTTAAAATATTCAC  350
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATG-TAGACAAAGTGGTAAGAAGTA-GAAATCTCACTTAAAATATTCAC  304

seq1  TCAACCTTATTTAACCAAATCTTTTTTCAGATTTCTGAATCTTCTAAACA  400
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAA-CTTATTTAACCAAATC-TTTTTCAGATTTCTGAATCTTCTAAACA  352

seq1  GAGCTCACTGGGATGATGCTGGGCTTGGAAAAACTAATTAAGGACGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCACTGGGATGATGCTGGGCTTGGAAAAACTAATTAAGGACGATCT  402

seq1  TCTAAAGCTACTTAGTATTTAGGAGAGGCACCGCACTCCAGTGTTTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGCTACTTAGTATTTAGGAGAGGCACCGCACTCCAGTGTTTGGAG  452

seq1  AGGGAAACCAAAGTCACATACAGGGTGGTTGGAGGATGTAAATGTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACCAAAGTCACATACAGGGTGGTTGGAGGATGTAAATGTTTATT  502

seq1  TCAGTGCTTTAAAATTAATTTTCAGCACTTGTTATATGATGAACAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTTTAAAATTAATTTTCAGCACTTGTTATATGATGAACAATTAA  552

seq1  CTGCTAATGAATGGATATATCAATATGTAAAGGCATACACATAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAATGAATGGATATATCAATATGTAAAGGCATACACATAAAAAAAA  602

seq1  ACTCTTAGAAATGACATATGAAACATTTACTTATTTAATGCAAAAGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGAAATGACATATGAAACATTTACTTATTTAATGCAAAAGCCTG  652

seq1  ACCTAAACTTTCAGTGAAATCACCAGTTATAGTAGAGTCTGCTGCAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAACTTTCAGTGAAATCACCAGTTATAGTAGAGTCTGCTGCAATGA  702

seq1  CCCTGGCTATGTCTTTGGTTTATTTTCTTGACTATTGTGTCATACGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTATGTCTTTGGTTTATTTTCTTGACTATTGTGTCATACGTGCT  752

seq1  TCAGGGAAGAGTGTCCACACTCTTAAACTACACTGGTTTTCAATATTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAAGAGTGTCCACACTCTTAAACTACACTGGTTTTCAATATTCTC  802

seq1  CGCCCTCCTAGGCATGCTAAATAATTTCAGTACGGTTATTTGAAAGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTCCTAGGCATGCTAAATAATTTCAGTACGGTTATTTGAAAGAAGT  852

seq1  TTATGATATGATTATGAGAATAGAAATAGGAAACATAAAATAGAAAAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATATGATTATGAGAATAGAAATAGGAAACATAAAATAGAAAAAAC  902

seq1  ATTATTATATAAGTACTGTTGTCAATTAAAAACTTTCCTACATTAAGTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATATAAGTACTGTTGTCAATTAAAAACTTTCCTACATTAAGTCA  952

seq1  TATAGAGATCAATGGCACTAGCTGTCATCCTCCGCATGTGCATCTCCCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGATCAATGGCACTAGCTGTCATCCTCCGCATGTGCATCTCCCCT  1002

seq1  CTCCCCTGCCAAGTGCACATATGCCATGCTCACATTCACACATATACACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTGCCAAGTGCACATATGCCATGCTCACATTCACACATATACACA  1052

seq1  TGCCATGCTCACACTCACACATATACATATGCCATGCTCACACTCACACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGCTCACACTCACACATATACATATGCCATGCTCACACTCACACA  1102

seq1  TATACATATGCCATGCTCACACTCACACATATACATGTCTGTGATACAGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATGCCATGCTCACACTCACACATATACATGTCTGTGATACAGA  1152

seq1  AACTTGGTATGAAGAATTC  1219
      |||||||||||||||||||
seq2  AACTTGGTATGAAGAATTC  1171

seq1: chr11_90996513_90997320
seq2: B6Ng01-107K15.g_66_877

seq1  GAATTCTTTCTTTCACCTCTTGATACAGAAACAAACGTGTCTTCATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTCACCTCTTGATACAGAAACAAACGTGTCTTCATTTCT  50

seq1  CTTCTATTGCTGCGATAAAGCTTTCTGATGAAAGCGGTTTGAAAGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTGCTGCGATAAAGCTTTCTGATGAAAGCGGTTTGAAAGAGAAA  100

seq1  GTTTAGTTTAGGCTTATGGCTTGAGAAGGACGGACAACAGGTGGTGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTTAGGCTTATGGCTTGAGAAGGACGGACAACAGGTGGTGACAG  150

seq1  TACGGTGGCAGAAGCAGCACACTGACTGGTCACACAGCAACCACACAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTGGCAGAAGCAGCACACTGACTGGTCACACAGCAACCACACAGGA  200

seq1  AGCAGAGAGTGAGCAGGAAGTGAGGTCAGCCAATAATGCCTCAAGGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAGTGAGCAGGAAGTGAGGTCAGCCAATAATGCCTCAAGGGCAG  250

seq1  CCCTCAGCTACACACATCATCCAGCAATCTCCTCATTCAATACCACCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCTACACACATCATCCAGCAATCTCCTCATTCAATACCACCAGT  300

seq1  TGAGGACCAAGTATTTAAGCACATAAACCTATGGGGGGGGGGCATTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACCAAGTATTTAAGCACATAAACCTATGGGGGGGGGGCATTTCCC  350

seq1  ACTCAAACCACATCAAACCATCTTAGCACTCATTAGAAATGAGCTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACCACATCAAACCATCTTAGCACTCATTAGAAATGAGCTTGCCT  400

seq1  GACCCAAAGTTCACTTGAATTATTTTTTTAAAGTGAGTGGTTGTCATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAAGTTCACTTGAATTATTTTTTTAAAGTGAGTGGTTGTCATGGT  450

seq1  TGAATATGCTTGGCGAAGGGAGTGGCACTATTAGAGGTGTGGCCTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGCTTGGCGAAGGGAGTGGCACTATTAGAGGTGTGGCCTTGTTG  500

seq1  GAATAGATATGTCACTGTAGGTGTGGGCTTTAAGTCCATATCCTAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATATGTCACTGTAGGTGTGGGCTTTAAGTCCATATCCTAACTGT  550

seq1  CTGAAAGTCAGTATTTTGCTAGCAGCTTTCAGATGAAGATGTAGAACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTCAGTATTTTGCTAGCAGCTTTCAGATGAAGATGTAGAACTCC  600

seq1  CAGCTCCTCCTATACCATGTCTGCCTGAATGTTGCCATGTTCCCTCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTCCTATACCATGTCTGCCTGAATGTTGCCATGTTCCCTCCTTG  650

seq1  ATGATACTGGACTGAACCTCTTAATCTGTAAGCCAGCCCCAAATAAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACTGGACTGAACCTCTTAATCTGTAAGCCAGCCCCAAATAAATGT  700

seq1  TGTCCATATAAGTC-TTGCCTTGGTCAT-GGTGTCTGTTACAGCAGTAAG  748
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  TGTCCATATAAGTCTTTGCCTTGGTCATGGGTGTCTGTTACAGCAGTAAG  750

seq1  -ACCCTAAGACAGTGTTTTT--GTTTTTGTTTTTTTGTTTTGTTTTGTTT  795
       |||||||||||||||||||  ||||||| |||||||||||||| |||||
seq2  AACCCTAAGACAGTGTTTTTTGGTTTTTG-TTTTTTGTTTTGTTCTGTTT  799

seq1  TGTTTTTCAAACA  808
       ||||| ||||||
seq2  GGTTTTCCAAACA  812