BAC Information

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BAC

Clone NameB6Ng01-107O03
Chromosome11 (Build37)
Map Location 41,090,492 - 41,225,963
singlet/doubletdoublet
Overlap geneLOC100039285
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256
Downstream geneHspd1, LOC100039292, Gabrg2, Gabra1, Gabra6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107O03.bB6Ng01-107O03.g
ACCDH915220DH915221
length1,186351
definitionDH915220|Mus musculus domesticus DNA, BAC clone: B6Ng01-107O03, 5' end.DH915221|Mus musculus domesticus DNA, BAC clone: B6Ng01-107O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,090,492 - 41,091,685)(41,225,613 - 41,225,963)
sequence
gaattcctagtataagaaaatgaaactttaattaatagaggatcagggct
tcatagacagccctcccctccgattgattgtggtgttctatatactttca
ataagctttctcttcagtttcccttgttgtctaacacactatagcaaggc
tgtccttgctctgttgtttcctcccggctctcttctttatttttaacaga
gctcagtggactcaacaaagttggttgctgtggaaacacagccttgattt
tcacaaatatttttctaggactaaatgtcacaatgattttttttctcagt
cttctccttgaacctctgttgctatgatctttcctgctcaaattttttga
acaatgttcctccaaatttttatgacaaattctaaattttaaacttaatc
acagttgtgacatatgatgacagagtatgagactgcttacaaaacagaca
aatacatcttgtcctggtgtgaacttgttttgtgctagggagaggaaaaa
aataatctaaatagtgaagcatgcattagcattggcaagaacgggatatc
tcagtatgtctggaatatgaaaattttcttgttgagtatatcagcaatac
ctaacatatagaacactgtgggtccctctattttgccactttcagtagta
acaaattttatatttattctcagtaaatattctctcttaattcatattca
gtgatggcaacacaatggaggcctgagtctttccttttactaagcattta
acccagtgcctatattgctaagagcaatcaatgatttttcagggtacctg
aaacactctcagaatcattgtctaaaaagcaaaacaacaacaatatcatg
atcatcatcattaccatctttaacaacaacaacaacaatagcagcacacc
cacacaccaacacacacatacaacacacaccacaacacacacactaccac
aaccaatgtatctagactggccctgaatttatgacatagtcaagaatgac
cttgaacttcgttttcacctttcttcatctacttcttggatcctaagatt
gcaagttatgcatgcttagaattatggcattctggaacttgaactcagag
ctcccatctgtgaggcaactaatagtccccagcctaaaatcttgagagag
tatctgaattcacctcacttggagaaatttttgacc
agaaatgtggagatgtgtatgatcgagcaagatctagagtcaaatcaaaa
gagaaaggagaattgttcagactaatcaacagatgtacatttttaaaaat
caagagagaagaatttagacatagagagaatctgacacttgggttttcag
ttaaggctgagctgtgtataaaaattcaacagtgttattgaaaagttcca
ttcagtgtccccacctcaccatggccatggggagactattcatatttagt
ttagaagagtcaagaactacagagggaataagaaaacaagagacagaata
tatgattcaaaagagggaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41090492_41091685
seq2: B6Ng01-107O03.b_49_1234

seq1  GAATTCCTAGTATAAGAAAATGAAACTTTAATTAATAGAGGATCAGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTATAAGAAAATGAAACTTTAATTAATAGAGGATCAGGGCT  50

seq1  TCATAGACAGCCCTCCCCTCCGATTGATTGTGGTGTTCTATATACTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGACAGCCCTCCCCTCCGATTGATTGTGGTGTTCTATATACTTTCA  100

seq1  ATAAGCTTTCTCTTCAGTTTCCCTTGTTGTCTAACACACTATAGCAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTTTCTCTTCAGTTTCCCTTGTTGTCTAACACACTATAGCAAGGC  150

seq1  TGTCCTTGCTCTGTTGTTTCCTCCCGGCTCTCTTCTTTATTTTTAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGCTCTGTTGTTTCCTCCCGGCTCTCTTCTTTATTTTTAACAGA  200

seq1  GCTCAGTGGACTCAACAAAGTTGGTTGCTGTGGAAACACAGCCTTGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGACTCAACAAAGTTGGTTGCTGTGGAAACACAGCCTTGATTT  250

seq1  TCACAAATATTTTTCTAGGACTAAATGTCACAATGATTTTTTTTCTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATATTTTTCTAGGACTAAATGTCACAATGATTTTTTTTCTCAGT  300

seq1  CTTCTCCTTGAACCTCTGTTGCTATGATCTTTCCTGCTCAAATTTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTGAACCTCTGTTGCTATGATCTTTCCTGCTCAAATTTTTTGA  350

seq1  ACAATGTTCCTCCAAATTTTTATGACAAATTCTAAATTTTAAACTTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTCCTCCAAATTTTTATGACAAATTCTAAATTTTAAACTTAATC  400

seq1  ACAGTTGTGACATATGATGACAGAGTATGAGACTGCTTACAAAACAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTGACATATGATGACAGAGTATGAGACTGCTTACAAAACAGACA  450

seq1  AATACATCTTGTCCTGGTGTGAACTTGTTTTGTGCTAGGGAGAGGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCTTGTCCTGGTGTGAACTTGTTTTGTGCTAGGGAGAGGAAAAA  500

seq1  AATAATCTAAATAGTGAAGCATGCATTAGCATTGGCAAGAACGGGATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCTAAATAGTGAAGCATGCATTAGCATTGGCAAGAACGGGATATC  550

seq1  TCAGTATGTCTGGAATATGAAAATTTTCTTGTTGAGTATATCAGCAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGTCTGGAATATGAAAATTTTCTTGTTGAGTATATCAGCAATAC  600

seq1  CTAACATATAGAACACTGTGGGTCCCTCTATTTTGCCACTTTCAGTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATATAGAACACTGTGGGTCCCTCTATTTTGCCACTTTCAGTAGTA  650

seq1  ACAAATTTTATATTTATTCTCAGTAAATATTCTCTCTTAATTCATATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTTATATTTATTCTCAGTAAATATTCTCTCTTAATTCATATTCA  700

seq1  GTGATGGCAACACAATGGAGGCCTGAGTCTTTCCTTTTACTAAGCATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCAACACAATGGAGGCCTGAGTCTTTCCTTTTACTAAGCATTTA  750

seq1  ACCCAGTGCCTATATTGCTAAGAGCAATCAATGATTTTTCAGGGTACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGCCTATATTGCTAAGAGCAATCAATGATTTTTCAGGGTACCTG  800

seq1  AAACACTCTCAGAATCATTGTCTAAAAAGCAAAACAACAACAATATCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTCTCAGAATCATTGTCTAAAAAGCAAAACAACAACAATATCATG  850

seq1  ATCATCATCATTACCATCTTTAACAACAACAACAACAATAGCAGCACACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATCATTACCATCTTTAACAACAACAACAACAATAGCAGCACACC  900

seq1  CACACACACAAACACACACATACAAACACACACACACAAACACACACACA  950
        ||||||| ||||||||||||| ||||||||| ||| ||||||||||| 
seq2  --CACACACCAACACACACATAC-AACACACAC-CAC-AACACACACAC-  944

seq1  TACACACAAACCAATGTATTCTAGACTGGCCCTGAATTTATGACATAGTC  1000
      ||| ||| |||||||||| |||||||||||||||||||||||||||||||
seq2  TAC-CAC-AACCAATGTA-TCTAGACTGGCCCTGAATTTATGACATAGTC  991

seq1  AAGAATGACCTTGAACTTCGTTTTCACCTTTCTTCATCTACTTCTTGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGAATGACCTTGAACTTCGTTTTCACCTTTCTTCATCTACTTCTTGGAT  1041

seq1  CCTAAGATTGC-AGGTATGCATGCTTAG-ATTATGGCATTCTGGAAC-TG  1097
      ||||||||||| || ||||||||||||| |||||||||||||||||| ||
seq2  CCTAAGATTGCAAGTTATGCATGCTTAGAATTATGGCATTCTGGAACTTG  1091

seq1  AACTCAGAGCTCCACATCTGTGAGGCAAACTATTAGTTCCTCAGCTACAA  1147
      ||||||||||||| |||||||||||| ||||| ||| ||| ||||   ||
seq2  AACTCAGAGCTCC-CATCTGTGAGGC-AACTAATAG-TCCCCAGCCTAAA  1138

seq1  ATCTTGATGAGGTAATCTGAATTCACCT-ACTTGAAGATA-TTTTGACC  1194
      ||||||| |||   |||||||||||||| ||||| ||| | ||||||||
seq2  ATCTTGA-GAGAGTATCTGAATTCACCTCACTTGGAGAAATTTTTGACC  1186

seq1: chr11_41225613_41225963
seq2: B6Ng01-107O03.g_73_423 (reverse)

seq1  CACACACACACACACACACACACACACACATATTCCCTCTTTTGAATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATATTCCCTCTTTTGAATCAT  50

seq1  ATATTCTGTCTCTTGTTTTCTTATTCCCTCTGTAGTTCTTGACTCTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGTCTCTTGTTTTCTTATTCCCTCTGTAGTTCTTGACTCTTCTA  100

seq1  AACTAAATATGAATAGTCTCCCCATGGCCATGGTGAGGTGGGGACACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATATGAATAGTCTCCCCATGGCCATGGTGAGGTGGGGACACTGA  150

seq1  ATGGAACTTTTCAATAACACTGTTGAATTTTTATACACAGCTCAGCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTTTTCAATAACACTGTTGAATTTTTATACACAGCTCAGCCTTA  200

seq1  ACTGAAAACCCAAGTGTCAGATTCTCTCTATGTCTAAATTCTTCTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAACCCAAGTGTCAGATTCTCTCTATGTCTAAATTCTTCTCTCTT  250

seq1  GATTTTTAAAAATGTACATCTGTTGATTAGTCTGAACAATTCTCCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAAAAATGTACATCTGTTGATTAGTCTGAACAATTCTCCTTTCT  300

seq1  CTTTTGATTTGACTCTAGATCTTGCTCGATCATACACATCTCCACATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATTTGACTCTAGATCTTGCTCGATCATACACATCTCCACATTTC  350

seq1  T  351
      |
seq2  T  351