BAC Information

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BAC

Clone NameB6Ng01-107O12
Chromosome11 (Build37)Y (Build37)
Map Location 29,786,126 - 29,787,155672,183 - 673,284
singlet/doubletsingletsinglet
Overlap geneC230094A16Rik
Upstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, 4931440F15Rik
Downstream geneSpnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107O12.bB6Ng01-107O12.g
ACCDH915236DH915237
length1,1321,088
definitionDH915236|Mus musculus domesticus DNA, BAC clone: B6Ng01-107O12, 5' end.DH915237|Mus musculus domesticus DNA, BAC clone: B6Ng01-107O12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,786,126 - 29,787,155)(672,183 - 673,284)
sequence
gaattcttccccacttttgaccatttagttcccagatagaagacacacat
cttggcagtgggccctaaggttcccagaggactctccatgctgcaggtcc
cctagaacacccaggtccttgagatcactgatgagtggaacgtagcataa
cttccaaaaaacccagagggtcttgtgctagcaggaacagagacaaagga
cagctgcctgagtagcagctgggttcgttctggttggcaccacccctgcg
ccatcttcagcacgtactctgtggagggccccaaggtccccagagatctc
tccacgctgcaggcatattaccacacctgggaccccgagatcactgatga
gtgttctaaaaacccagagagccgggcggtggtggcccatgcctttaatc
ccagcacttgggtggcagaggcaggtggatttctgagttccaggccagtc
tggtctacaaagtgagttccaggacaggcagggttatacagagaaacctg
gtctcaaaaaaccaaaaccaaccaaccaaccaaccaaccaaccaaacaaa
caagcaagccccagagggtcttttgctagcagcaacagggtcaaaggaca
aaggcaggccctagcacactcagaatcttgggatcactgagaccagtcta
cacaggagagcacatgagaggcaaaagcaacagcgcttcttagacagggt
ccctttgggccttcatcctcagccaggggacagagctcagacccagaccc
ctggacatcttcctttccaaaggagagtcggcctccagggagggctctga
cggcaggaatcaggaggtatctgtgcaccttccctgcaagaggacttctc
tgcttgcctgcagagagtgttctggccactgggacacaggagaaggtagg
tctcccagcagtgctgacagaggctaaagaatcacaggaggaacaagctc
aagccagagacagctagaacatctaacactagagattaccagttggcgaa
agcaaacgaaagaatcttgctacagaattcaggaccactgggcatcatca
gacccagtatgtccaccacctcgagtctagataccccaacacacccgaaa
agcaagtcagatctaaatcaatctcatgatgc
gaattcttcttgagattgtgttcgaatgagattttctgtcttcaaatacc
gcttatttttttctttttattctttcgattttgctttgtaagtcaaagaa
aagaatttaacttggatgtatttaatttttatttaaagtgaacttaatgt
taatgatttttagcttacttttcatctaaaaaaatcaaggaattcattta
ttactcttacattttgagtatctgaaactgtttttgaattaagtatttaa
gtcaattgtcaaatcattgtaaaagtactttcttacaagatatttagttt
tctaaaagtatatttttactagtataatgtgtaatgtctttttctaactc
cttaggaattaattgattatttcatctttcctgcatccaaagcttacctg
caatatatgagaagtggggaattgccaatcaagcaagctattccagtctg
tggttcaccagctacaattaatgctggttttgaactacttgtagctttgg
cttttggttgtgtaaggaatcttaaacagatagtaaactgtttgactgaa
ctgttttacataggcacaccagtaactagtaagtaaaatttaaaattctt
gtttactatgtctcagtattttattgtttaaaatttaagacatttgtaag
cagaaaaattttatactgaatgcatcactggtattaacttagttttgtaa
tttagcataataaattttatttaatattgtcataaaatctaaagtccaaa
atctctagaaccagaaatgatgccaccaatataaacatttaagcactaga
tattgtgaagaacttcatatgctaatttagagtgctaaatgttaattgag
ttctgataataaaatcatttttaagatccaaagagatattcaagtgacta
ctgtacgttccatggtctagagattttactcagaaaagaagacaaaccag
gcatagtggtacatacctttatcctcagactacagaagtgagtagagata
atgatttgaggcccagagagctaattatgtagcagtatgagaccactggc
tacatagcatgtatctaggttttgagacaaaaatgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29786126_29787155
seq2: B6Ng01-107O12.b_482_1180

seq1  TGTGTTCCAGGCCAGCCTAGCCTACAAAGTGAGTTCCAGGACAGCCAGGG  50
      || |||||||||||| || | ||||||||||||||||||||||| |||||
seq2  TGAGTTCCAGGCCAGTCTGGTCTACAAAGTGAGTTCCAGGACAGGCAGGG  50

seq1  GTACACCTAGAAACCCTGCTTCAAAAAATTAAAAATAAAAATAAAAAGCA  100
       || ||  |||||||  |  ||||||||  ||||                
seq2  TTATACAGAGAAACCTGGTCTCAAAAAACCAAAA----------------  84

seq1  GGGTCTGGAGAGGTGACTCAGCAGTTAAGAGTCTGCTCTTCCAGAAGACC  150
                                                        
seq2  --------------------------------------------------  84

seq1  AGAGTGTTAGTCCCAGCAACCACATGGTGGCTCACAATTTTCTGTAACTC  200
                 || | ||||||                            
seq2  -----------CCAACCAACCA----------------------------  95

seq1  CAGTTCCAGGAGATTTGACACAGACACACATGCAGCCAAACACCAAAGCA  250
                                 ||   || |||| |         
seq2  ---------------------------AC---CAACCAACC---------  106

seq1  CATAAAATTAAAATGGAAAAAAAAATCAAACATACAAAAATCATCTGTAT  300
                             || |||||| ||||             
seq2  -----------------------AACCAAACAAACAA-------------  120

seq1  TAACACATTTATTTTTCATGCAAGAATGCAAGATACCGATCTTGGTCATG  350
                                 |||||                  
seq2  ---------------------------GCAAG------------------  125

seq1  ATCTTGGTGGAGGGCCCAAAGGTCCCCAGAGGTCTCTCCATGCTGCAGGT  400
                                                        
seq2  --------------------------------------------------  125

seq1  TCCCTAGCACACCAGGGATCTTGAGATCACTGGTGAGTGGAATGCAACAT  450
       |||                                              
seq2  -CCC----------------------------------------------  128

seq1  CAGTTCCAAAAAACTCAGAGGGTCTTGTGCTAGCAGGAACAGGGTCAAAG  500
                     ||||||||||| ||||||||| |||||||||||||
seq2  ---------------CAGAGGGTCTTTTGCTAGCAGCAACAGGGTCAAAG  163

seq1  GACAAAGGCAGGCCCTAGCACACCCAGAATCTTGGGCTCACTGAGA----  546
      ||||||||||||||||||||||| |||||||||||| |||||||||    
seq2  GACAAAGGCAGGCCCTAGCACACTCAGAATCTTGGGATCACTGAGACCAG  213

seq1  ACTACGCAGGGGAGCATGTGGGCCGTAGAAGCAACAGAGCTTCCTGGACA  596
       |||| |||| |||||  || |  | | ||||||||| ||||| | ||||
seq2  TCTACACAGGAGAGCACATGAGAGGCAAAAGCAACAGCGCTTCTTAGACA  263

seq1  GGGTCCCTTTGGGCCTTCATCCTCAGACAGGAGACAGAGCTGAGACCCAG  646
      |||||||||||||||||||||||||| |||| ||||||||| ||||||||
seq2  GGGTCCCTTTGGGCCTTCATCCTCAGCCAGGGGACAGAGCTCAGACCCAG  313

seq1  ACCCCTGGAAACCTTCCCTGCCAGAGAAGAGTCAGCCTCCAGGGAGGGCT  696
      ||||||||| | ||||| | ||| || |||||| ||||||||||||||||
seq2  ACCCCTGGACATCTTCCTTTCCAAAGGAGAGTCGGCCTCCAGGGAGGGCT  363

seq1  CTGACTCCAGGAATCAGGAGGTGGATCTGAGCTC------------ATGA  734
      |||||  |||||||||||||||  ||||| || |            | ||
seq2  CTGACGGCAGGAATCAGGAGGT--ATCTGTGCACCTTCCCTGCAAGAGGA  411

seq1  CTTCTGTGCACCTTTCCTGCAGGAGGAGACCTTGCTCTGACCACTGGGAC  784
      ||||| ||   ||| ||||||    ||||   || |||| ||||||||||
seq2  CTTCTCTG---CTTGCCTGCA----GAGA--GTGTTCTGGCCACTGGGAC  452

seq1  ACAGGAGAGAGTTGGTCTCCTAGGAGTGCTGACAGAGGCTAAAGAATCAC  834
      ||||||||  || ||||||| || ||||||||||||||||||||||||||
seq2  ACAGGAGAAGGTAGGTCTCCCAGCAGTGCTGACAGAGGCTAAAGAATCAC  502

seq1  AGGAGGAACAAGCTCAAGCCAGAGACAGCTAGAACGTCTAGCACTAGAAA  884
      ||||||||||||||||||||||||||||||||||| |||| ||||||| |
seq2  AGGAGGAACAAGCTCAAGCCAGAGACAGCTAGAACATCTAACACTAGAGA  552

seq1  TTACCAGATGGTGAAAGGCAAATGAAAGAATCTTACTAACAGAAACCAAG  934
      ||||||| ||| |||| ||||| ||||||||||| || ||||||  || |
seq2  TTACCAGTTGGCGAAA-GCAAACGAAAGAATCTTGCT-ACAGAATTCAGG  600

seq1  ACCACTGGGCATCATAAGAACCCATTACACCCACCACAGTGAGTGTA---  981
      ||||||||||||||| || ||||| ||   |||||||   |||| ||   
seq2  ACCACTGGGCATCATCAG-ACCCAGTATGTCCACCACCTCGAGTCTAGAT  649

seq1  -----CTCACACCCGAAAAGCAAGATTCAGATCTAAAATCATATCTCATG  1026
             |||||||||||||||||  |||||||| |||||| ||||||||
seq2  ACCCCAACACACCCGAAAAGCAAG--TCAGATCT-AAATCA-ATCTCATG  695

seq1  ATGC  1030
      ||||
seq2  ATGC  699

seq1: chrY_672183_673284
seq2: B6Ng01-107O12.g_68_1155 (reverse)

seq1  CCTCAATTTTTTGTCTCAAAACCCTAGATACATGCTATGGTAGCCAGTGG  50
      |||||  |||||||||||||| |||||||||||||||| |||||||||||
seq2  CCTCA--TTTTTGTCTCAAAA-CCTAGATACATGCTAT-GTAGCCAGTGG  46

seq1  TCTTCCATACTGCTACATATATAGCTCTCTGTGGCCTCAAATTCATTATC  100
      |||  ||||||||||||||  |||||||||| ||||||||| ||||||||
seq2  TCT--CATACTGCTACATAATTAGCTCTCTG-GGCCTCAAA-TCATTATC  92

seq1  CTTCTACTCCACTTTCTGTAGTCTGAGGATAAAGGTATGTACCACTATGC  150
        |||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  --TCTACT-CAC-TTCTGTAGTCTGAGGATAAAGGTATGTACCACTATGC  138

seq1  CTGGTTTGTCTTTCTTTTCTGAGTAAAATCTCTAGACCATGGAACGTACA  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGTC-TTCTTTTCTGAGTAAAATCTCTAGACCATGGAACGTACA  187

seq1  GTAGTCACTTGAATATTCTCTTTGGATCTTAAAAATGATTTTATTATCAG  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTAGTCACTTGAATA-TCTCTTTGGATCTTAAAAATGATTTTATTATCAG  236

seq1  AACTCAATTAACATTTAGCACTCTAAATTAGCATATGAAGTTCTTCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAATTAACATTTAGCACTCTAAATTAGCATATGAAGTTCTTCACAA  286

seq1  TATCTAGTGCTTAAATGTTTATATTGGTGGCATCATTTCTGGTTCTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGTGCTTAAATGTTTATATTGGTGGCATCATTTCTGGTTCTAGAG  336

seq1  ATTTTGGACTTTAGATTTTATGACAATATTAAATAAAATTTATTATGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGACTTTAGATTTTATGACAATATTAAATAAAATTTATTATGCTA  386

seq1  AATTACAAAACTAAGTTAATACCAGTGATGCATTCAGTATAAAATTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAAACTAAGTTAATACCAGTGATGCATTCAGTATAAAATTTTTC  436

seq1  TGCTTACAAATGTCTTAAATTTTAAACAATAAAATACTGAGACATAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACAAATGTCTTAAATTTTAAACAATAAAATACTGAGACATAGTAA  486

seq1  ACAAGAATTTTAAATTTTACTTACTAGTTACTGGTGTGCCTATGTAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATTTTAAATTTTACTTACTAGTTACTGGTGTGCCTATGTAAAAC  536

seq1  AGTTCAGTCAAACAGTTTACTATCTGTTTAAGATTCCTTACACAACCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTCAAACAGTTTACTATCTGTTTAAGATTCCTTACACAACCAAA  586

seq1  AGCCAAAGCTACAAGTAGTTCAAAACCAGCATTAATTGTAGCTGGTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGCTACAAGTAGTTCAAAACCAGCATTAATTGTAGCTGGTGAAC  636

seq1  CACAGACTGGAATAGCTTGCTTGATTGGCAATTCCCCACTTCTCATATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTGGAATAGCTTGCTTGATTGGCAATTCCCCACTTCTCATATAT  686

seq1  TGCAGGTAAGCTTTGGATGCAGGAAAGATGAAATAATCAATTAATTCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTAAGCTTTGGATGCAGGAAAGATGAAATAATCAATTAATTCCTA  736

seq1  AGGAGTTAGAAAAAGACATTACACATTATACTAGTAAAAATATACTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTAGAAAAAGACATTACACATTATACTAGTAAAAATATACTTTTA  786

seq1  GAAAACTAAATATCTTGTAAGAAAGTACTTTTACAATGATTTGACAATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTAAATATCTTGTAAGAAAGTACTTTTACAATGATTTGACAATTG  836

seq1  ACTTAAATACTTAATTCAAAAACAGTTTCAGATACTCAAAATGTAAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATACTTAATTCAAAAACAGTTTCAGATACTCAAAATGTAAGAGT  886

seq1  AATAAATGAATTCCTTGATTTTTTTAGATGAAAAGTAAGCTAAAAATCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGAATTCCTTGATTTTTTTAGATGAAAAGTAAGCTAAAAATCAT  936

seq1  TAACATTAAGTTCACTTTAAATAAAAATTAAATACATCCAAGTTAAATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTAAGTTCACTTTAAATAAAAATTAAATACATCCAAGTTAAATTC  986

seq1  TTTTCTTTGACTTACAAAGCAAAATCGAAAGAATAAAAAGAAAAAAATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGACTTACAAAGCAAAATCGAAAGAATAAAAAGAAAAAAATAA  1036

seq1  GCGGTATTTGAAGACAGAAAATCTCATTCGAACACAATCTCAAGAAGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTATTTGAAGACAGAAAATCTCATTCGAACACAATCTCAAGAAGAAT  1086

seq1  TC  1102
      ||
seq2  TC  1088