BAC Information

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BAC

Clone NameB6Ng01-107O19
Chromosome11 (Build37)
Map Location 101,397,803 - 101,493,258
singlet/doubletdoublet
Overlap geneBrca1, Nbr1, Tmem106a, LOC667306, Rdm1
Upstream geneTtc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2
Downstream geneArl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107O19.bB6Ng01-107O19.g
ACCDH915250DH915251
length1,075995
definitionDH915250|Mus musculus domesticus DNA, BAC clone: B6Ng01-107O19, 5' end.DH915251|Mus musculus domesticus DNA, BAC clone: B6Ng01-107O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,397,803 - 101,398,880)(101,492,269 - 101,493,258)
sequence
gaattcaaagccaggctgatctagagaatgagtcccaggatggctaggac
tctttttttgtttggttggttttttttctttgagacaaggtttttctgtg
tagccctggctattccggactcacttagtagaccaggttgacctcaaact
ctgagatccacctgctttggcctcccaagtgctgagattaaagtgcaggc
caccacactcagtgatagccagggctcttaatccaatcattctccacctt
attttttgagacaggctctctgactgcacccggggcttgttgatttggct
gtaataactagtcagcaagcccagggaccctcctatctctccttccccag
ccctgggattccaggcacacacagccacgcttagctttgggtcctgggca
cataaagaccttagttttgtatggtgcatactttgccaactgggtcattt
cctcaacccaaaagtcactccacacacaaaaaggaactcgaatggctcat
ggacaagcggtagagattcagtggtgataattaacgatgtgactcaggca
cacgactaactcataactggtacctctccagatacagtaagtgctaaagc
aaaggaaaatccttgctattttaatgcacatgacagggtagggaataaaa
agcagataccaacattaatgacaaccaaggaagatgaaaggaattgaaaa
gttagtgttaatagtgaactaggagacaaatgtagtgtatggccaagtct
tttaacatatatttccctctttttaaattccttatttttaaatgctttat
tcagtagtgtaggatagggctaagagaatagcaagctcttacaggatgct
gttgctactgacccataaactccttgaggagtaagctttaagagttgcac
tatccagtaaaacagctacagccagatgtggtactgagcaatgtgtcagc
ctgaactaaggtaaggtaattatgggaacaacacaggcacgtggagactg
taactctcactctttggagtaacgttttcgcttacattcagttcacagct
gctggctccaggtgctctggccaga
gaattctgcagagcagggttgggtgtggaacagggtctggtgatgaaccc
acaacgagctttaccgatccagcagtctcgggagcctaccccatcccacc
ggtgactaaacacccttgcctccaacttgaacccctcctgctgaagacca
tggagcctataaaaaaaccttgacttcaactggagtggcttttcacaatg
cccttctacctagcccagccattccattccaaggcagaggattgagtgtc
tgtctatacaaaagtttgtggcactgtttagataacaataaatgatgggt
ctgtctgtttgtccctctgtgtacacaagagagctgtcggccaggtatgc
ttttaatcccagcacttgggaggcagaggcaggccagcctggtctacaaa
gtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaaa
ccaaaacaaccaaaacaaacaaacaaacaacaaaaaaaagagaggtgtca
gagcctactggatctgcagacaggtgtttcagccaccggaaccgagtgct
ggctagaattcctttacaacaaaagtacaggctaacacactgagccattt
ctcctgtcctagagcagggcttttctgagataattgaagacgaagataaa
ggactctggccaattatttcaacctaaagcaagtccttgaccaaaaactg
gggacacaatttctcccctaagccttctgggcaggagggcagtccctgtt
gtaaatgtaaagggtttgtcatgcgtacacttaaggtgaaagtccctatt
acaaggcataacaattctgcctaagacttcagtctagtctagtcagccta
ggcttcggaaggtcctggctagtagctgacaacaagtggagagaaggaag
agagacagagagacagagagacagacagatccggtgacataatccactct
tccctgagccaaggacataccttctttcagctggcgcagaggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101397803_101398880
seq2: B6Ng01-107O19.b_47_1121

seq1  GAATTCAAAGCCAGGCTGATCTAGAGAATGAGTCCCAGGATGGCTAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCAGGCTGATCTAGAGAATGAGTCCCAGGATGGCTAGGAC  50

seq1  TCTTTTTTTGTTTGGTTGGTTTTTTTTCTTTGAGACAAGGTTTTTCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTGTTTGGTTGGTTTTTTTTCTTTGAGACAAGGTTTTTCTGTG  100

seq1  TAGCCCTGGCTATTCCGGACTCACTTAGTAGACCAGGTTGACCTCAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTATTCCGGACTCACTTAGTAGACCAGGTTGACCTCAAACT  150

seq1  CTGAGATCCACCTGCTTTGGCCTCCCAAGTGCTGAGATTAAAGTGCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCCACCTGCTTTGGCCTCCCAAGTGCTGAGATTAAAGTGCAGGC  200

seq1  CACCACACTCAGTGATAGCCAGGGCTCTTAATCCAATCATTCTCCACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACTCAGTGATAGCCAGGGCTCTTAATCCAATCATTCTCCACCTT  250

seq1  ATTTTTTGAGACAGGCTCTCTGACTGCACCCGGGGCTTGTTGATTTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGAGACAGGCTCTCTGACTGCACCCGGGGCTTGTTGATTTGGCT  300

seq1  GTAATAACTAGTCAGCAAGCCCAGGGACCCTCCTATCTCTCCTTCCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAACTAGTCAGCAAGCCCAGGGACCCTCCTATCTCTCCTTCCCCAG  350

seq1  CCCTGGGATTCCAGGCACACACAGCCACGCTTAGCTTTGGGTCCTGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGATTCCAGGCACACACAGCCACGCTTAGCTTTGGGTCCTGGGCA  400

seq1  CATAAAGACCTTAGTTTTGTATGGTGCATACTTTGCCAACTGGGTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGACCTTAGTTTTGTATGGTGCATACTTTGCCAACTGGGTCATTT  450

seq1  CCTCAACCCAAAAGTCACTCCACACACAAAAAGGAACTCGAATGGCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACCCAAAAGTCACTCCACACACAAAAAGGAACTCGAATGGCTCAT  500

seq1  GGACAAGCGGTAGAGATTCAGTGGTGATAATTAACGATGTGACTCAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGCGGTAGAGATTCAGTGGTGATAATTAACGATGTGACTCAGGCA  550

seq1  CACGACTAACTCATAACTGGTACCTCTCCAGATACAGTAAGTGCTAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGACTAACTCATAACTGGTACCTCTCCAGATACAGTAAGTGCTAAAGC  600

seq1  AAAGGAAAATCCTTGCTATTTTAATGCACATGACAGGGTAGGGAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAATCCTTGCTATTTTAATGCACATGACAGGGTAGGGAATAAAA  650

seq1  AGCAGATACCAACATTAATGACAACCAAGGAAGATGAAAGGAATTGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATACCAACATTAATGACAACCAAGGAAGATGAAAGGAATTGAAAA  700

seq1  GTTAGTGTTAATAGTGAACTAGGAGACAAATGTAGTGTATGGCCAAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGTTAATAGTGAACTAGGAGACAAATGTAGTGTATGGCCAAGTCT  750

seq1  TTTAACATATATTTCCCTCTTTTTAAATTCCTTATTTTTAAATGCTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATATATTTCCCTCTTTTTAAATTCCTTATTTTTAAATGCTTTAT  800

seq1  TCAGTAGTGTAGGATAGGGCTAAGAGAATAGCAAGCTCTTACAGGATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTGTAGGATAGGGCTAAGAGAATAGCAAGCTCTTACAGGATGCT  850

seq1  GTTGCTACTGACCCATAAACTCCTTGAGGAGTAAGCTTTAAGAGTTGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTACTGACCCATAAACTCCTTGAGGAGTAAGCTTTAAGAGTTGCAC  900

seq1  TATCCAGTAAAACAGCTACAGCCAGATGTGGTACTGAGCAATGTGTCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTAAAACAGCTACAGCCAGATGTGGTACTGAGCAATGTGTCAGC  950

seq1  CTGAACTAAGGTAAGGTAAATAT-GGAACAACACAGGCACGTGGAGACTG  999
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  CTGAACTAAGGTAAGGTAATTATGGGAACAACACAGGCACGTGGAGACTG  1000

seq1  TAACTCTCACTCTTTGGAGTAAACGTTTTCGCTTACAATTTCAGTTCACA  1049
      |||||||||||||||||||| ||||||||||||||||  |||||||||||
seq2  TAACTCTCACTCTTTGGAGT-AACGTTTTCGCTTACA--TTCAGTTCACA  1047

seq1  GCTGGCTGGCTCCA-GTGCTCTGGGCCAGA  1078
      ||| |||||||||| ||||||| |||||||
seq2  GCT-GCTGGCTCCAGGTGCTCT-GGCCAGA  1075

seq1: chr11_101492269_101493258
seq2: B6Ng01-107O19.g_67_1061 (reverse)

seq1  GAGCCTCTGCGCCAGCTGGAGGAAGGTATGTCCTTGGCTCAGGG-AGGGT  49
      |||||||||||||||||| | ||||||||||||||||||||||| || ||
seq2  GAGCCTCTGCGCCAGCTGAAAGAAGGTATGTCCTTGGCTCAGGGAAGAGT  50

seq1  GGA-TATGTCA-CGGATCTGTCTGTCTCTCTGTCTCTCTGTCTCTCTTCC  97
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGATTATGTCACCGGATCTGTCTGTCTCTCTGTCTCTCTGTCTCTCTTCC  100

seq1  TTCTCTCCACTTGTTGTCAGCTACTAGCCAGGCCCTTCCGAAGCCTAGGC  147
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCTCTCCACTTGTTGTCAGCTACTAGCCAGGACCTTCCGAAGCCTAGGC  150

seq1  TGACTAGACTAGACTGAAGTCTTAGGCAGAATTGTTATGCCTTGTAATAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGACTAGACTGAAGTCTTAGGCAGAATTGTTATGCCTTGTAATAG  200

seq1  GGACTTTCACCTTAAGTGTACGCATGACAAACCCTTTACATTTACAACA-  246
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGACTTTCACCTTAAGTGTACGCATGACAAACCCTTTACATTTACAACAG  250

seq1  GGACTGCCCTCCTGCCCAG-AGGCTTAGGGGAGAAATTGTGTCCCCAGTT  295
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGACTGCCCTCCTGCCCAGAAGGCTTAGGGGAGAAATTGTGTCCCCAGTT  300

seq1  TTTGGTCAAGGACTTGCTTTAGGTTGAAATAATTGGCCAGAGTCCTTTAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCAAGGACTTGCTTTAGGTTGAAATAATTGGCCAGAGTCCTTTAT  350

seq1  CTTCGTCTTCAATTATCTCAGAAAAGCCCTGCTCTAGGACAGGAGAAATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTCTTCAATTATCTCAGAAAAGCCCTGCTCTAGGACAGGAGAAATG  400

seq1  GCTCAGTGTGTTAGCCTGTACTTTTGTTGTAAAGGAATTCTAGCCAGCAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGTGTTAGCCTGTACTTTTGTTGTAAAGGAATTCTAGCCAGCAC  450

seq1  TCGGTTCCGGTGGCTGAAACACCTGTCTGCAGATCCAGTAGGCTCTGACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTCCGGTGGCTGAAACACCTGTCTGCAGATCCAGTAGGCTCTGACA  500

seq1  CCTCTCTTTTTTTTGTTGTTTGTTTGTTTGTTTTGGTTGTTTTGGTTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTTTTTTTGTTGTTTGTTTGTTTGTTTTGGTTGTTTTGGTTTTT  550

seq1  TGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGT  600

seq1  AGACCAGGCTGGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGCATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGCATA  650

seq1  CCTGGCCGACAGCTCTCTTGTGTACACAGAGGGACAAACAGACAGACCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCGACAGCTCTCTTGTGTACACAGAGGGACAAACAGACAGACCCA  700

seq1  TCATTTATTGTTATCTAAACAGTGCCACAAACTTTTGTATAGACAGACAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTGTTATCTAAACAGTGCCACAAACTTTTGTATAGACAGACAC  750

seq1  TCAATCCTCTGCCTTGGAATGGAATGGCTGGGCTAGGTAGAAGGGCATTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCTCTGCCTTGGAATGGAATGGCTGGGCTAGGTAGAAGGGCATTG  800

seq1  TGAAAAGCCACTCCAGTTGAAGTCAAGGTTTTTTTATAGGCTCCATGGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCCACTCCAGTTGAAGTCAAGGTTTTTTTATAGGCTCCATGGTC  850

seq1  TTCAGCAGGAGGGGTTCAAGTTGGAGGCAAGGGTGTTTAGTCACCGGTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGGAGGGGTTCAAGTTGGAGGCAAGGGTGTTTAGTCACCGGTGG  900

seq1  GATGGGGTAGGCTCCCGAGACTGCTGGATCGGTAAAGCTCGTTGTGGGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGTAGGCTCCCGAGACTGCTGGATCGGTAAAGCTCGTTGTGGGTT  950

seq1  CATCACCAGACCCTGTTCCACACCCAACCCTGCTCTGCAGAATTC  990
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCAGACCCTGTTCCACACCCAACCCTGCTCTGCAGAATTC  995