BAC Information

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BAC

Clone NameB6Ng01-108C23
Chromosome11 (Build37)
Map Location 87,718,958 - 87,720,013
singlet/doubletsinglet
Overlap genenone
Upstream geneYpel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463
Downstream geneOlfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108C23.b
ACCDH915435
length1,056
definitionDH915435|Mus musculus domesticus DNA, BAC clone: B6Ng01-108C23, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttagatagctgttggttcttgtgtcacaggggcactgatctca
aaggtgtggtatttggaggtgactttttttttttcgggacagggtttctc
ggtgtagccctggctgtcctggaactcactctgtagaccaggctggcctc
gtactcagaaatctgcctgcctctccctcccaagtgctgggattaaagga
gtgctccaccatgcctggcatggaggtgacttttatagcctgacatggag
tgctgagtggttgcatgcacatgagcagacttttgttttgtgaagttcat
atgtgcagacatttatgcaacttctaagagttggagtatgcaccagcatg
tctcctctgcttcttagtcactcatttacccatattcacagccacaatat
agatatgagaggaggagagcatgggcctgtgtgacttgatccatctcaca
caggttctcccttctcacaaaagtcctgtctcccggttctgttcacatcc
tccagatcgcctcctcctcaggcacagcatctgtggtcctccagttggtt
tctttatcccaacctcctgaccccagcatcatgggcaaaccttctgtctt
cactgctgtatgacaacatccccctcttaaatgtggcatttactgtgaga
ccctttgcgcatgtttgtgtgtgtgtgtgtgaattgttcagaaaacatag
gctattgcctctgaattctgcaccaaccacttctgaagttggtatcagtg
agatgcctttgtctgtcagcagcttgactaagccaatgagagcagctcaa
gtaaggagttaagctctgtctcagatagaagacccaggacaagcactttc
ctgatagttaattctgcacatcaaaaaatgtcatggctcatgtgtcttct
tggtgatgccgtactttcttctcatgaagatgtggctgccagagctccgg
atgtcacagcttcacattttgagccctttaattgagacaaagaaaggaac
cacatgcagttaattttcctttgtgcatatgtgtgtgcaatatatacgtt
gcatgt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_87718958_87720013
seq2: B6Ng01-108C23.b_46_1101 (reverse)

seq1  ACATGC-ACGTATATA-TGCACACACATATGCACAAAGGAAAAATAACTT  48
      |||||| ||||||||| |||||||||||||||||||||||||| |||| |
seq2  ACATGCAACGTATATATTGCACACACATATGCACAAAGGAAAATTAAC-T  49

seq1  GCATGTGTTTCCCTTTTCTTTTGTCTC-ACTAAAGGGCTC-AAATGTGAA  96
      ||||||| ||||  |||| |||||||| | |||||||||| |||||||||
seq2  GCATGTGGTTCC--TTTC-TTTGTCTCAATTAAAGGGCTCAAAATGTGAA  96

seq1  GCTGTGACATCCGGAGCTCTGGCAGCCACATCTTCATGAGACGAAAGTAC  146
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTGTGACATCCGGAGCTCTGGCAGCCACATCTTCATGAGAAGAAAGTAC  146

seq1  GGCATCACCAAGAAGACAACATGAGCCATGACATTTTTTGATGTGCAGAA  196
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGCATCACCAAGAAGAC-ACATGAGCCATGACATTTTTTGATGTGCAGAA  195

seq1  TTAACTATCAGGAAAGTGCTTGTCCTGGGTCTTCTATCTGAGACAGAGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATCAGGAAAGTGCTTGTCCTGGGTCTTCTATCTGAGACAGAGCT  245

seq1  TAACTCCTTACTTGAGCTGCTCTCATTGGCTTAGTC-AGCTGCTGACAGA  295
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAACTCCTTACTTGAGCTGCTCTCATTGGCTTAGTCAAGCTGCTGACAGA  295

seq1  CAAAGGCATCTCACTGATACCAACTTCAGAAGTGGTTGGTGCAGAATTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCATCTCACTGATACCAACTTCAGAAGTGGTTGGTGCAGAATTCA  345

seq1  GAGGCAATAGCCTATGTTTTCTGAACAATTCACACACACACACACAAACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAATAGCCTATGTTTTCTGAACAATTCACACACACACACACAAACA  395

seq1  TGCGCAAAGGGTCTCACAGTAAATGCCACATTTAAGAGGGGGATGTTGTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAAAGGGTCTCACAGTAAATGCCACATTTAAGAGGGGGATGTTGTC  445

seq1  ATACAGCAGTGAAGACAGAAGGTTTGCCCATGATGCTGGGGTCAGGAGGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAGTGAAGACAGAAGGTTTGCCCATGATGCTGGGGTCAGGAGGT  495

seq1  TGGGATAAAGAAACCAACTGGAGGACCACAGATGCTGTGCCTGAGGAGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAAAGAAACCAACTGGAGGACCACAGATGCTGTGCCTGAGGAGGA  545

seq1  GGCGATCTGGAGGATGTGAACAGAACCGGGAGACAGGACTTTTGTGAGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATCTGGAGGATGTGAACAGAACCGGGAGACAGGACTTTTGTGAGAA  595

seq1  GGGAGAACCTGTGTGAGATGGATCAAGTCACACAGGCCCATGCTCTCCTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAACCTGTGTGAGATGGATCAAGTCACACAGGCCCATGCTCTCCTC  645

seq1  CTCTCATATCTATATTGTGGCTGTGAATATGGGTAAATGAGTGACTAAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATATCTATATTGTGGCTGTGAATATGGGTAAATGAGTGACTAAGA  695

seq1  AGCAGAGGAGACATGCTGGTGCATACTCCAACTCTTAGAAGTTGCATAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGAGACATGCTGGTGCATACTCCAACTCTTAGAAGTTGCATAAA  745

seq1  TGTCTGCACATATGAACTTCACAAAACAAAAGTCTGCTCATGTGCATGCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCACATATGAACTTCACAAAACAAAAGTCTGCTCATGTGCATGCA  795

seq1  ACCACTCAGCACTCCATGTCAGGCTATAAAAGTCACCTCCATGCCAGGCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCAGCACTCCATGTCAGGCTATAAAAGTCACCTCCATGCCAGGCA  845

seq1  TGGTGGAGCACTCCTTTAATCCCAGCACTTGGGAGGGAGAGGCAGGCAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAGCACTCCTTTAATCCCAGCACTTGGGAGGGAGAGGCAGGCAGA  895

seq1  TTTCTGAGTACGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTACGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC  945

seq1  AGGGCTACACCGAGAAACCCTGTCCCGAAAAAAAAAAAGTCACCTCCAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACCGAGAAACCCTGTCCCGAAAAAAAAAAAGTCACCTCCAAA  995

seq1  TACCACACCTTTGAGATCAGTGCCCCTGTGACACAAGAACCAACAGCTAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACCTTTGAGATCAGTGCCCCTGTGACACAAGAACCAACAGCTAT  1045

seq1  CTAAGGAATTC  1056
      |||||||||||
seq2  CTAAGGAATTC  1056