BAC Information

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BAC

Clone NameB6Ng01-108I06
Chromosome11 (Build37)
Map Location 13,572,146 - 13,573,227
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108I06.bB6Ng01-108I06.g
ACCDH915682DH915683
length8031,065
definitionDH915682|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I06, 5' end.DH915683|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatttttccatgacttttatcatgaagtggtgttgaattttg
tcaaatgctttctcagcatctaatgtgatcatgtgatttttgtctttgag
tttgtttatataatggattatgttgacagatttccatatattaaaacatc
cctgcatccctgggatgaagcctacttggtcatgatggatggtcattttg
atgtattcttggattctgttaggggggattttattgagtatttgcatcga
tattcataagggaaattggcctgacgttctctttctttgttggatctttg
cgtggattaggtatcagagtaattgttgcttcatagaatgaattgtgtag
agtatcttctgtttctattttgtggaatagtttgaggagagttggaatta
ggtcttctttgaaggtctgatagaactctgcactaaacccatctggacct
ggactttttttggttgggagactattaatgactgcttctatttctttagg
ggagattagactgttaagatctttaatctaatcctgatttaactttggta
cctggtatctgtctaggaagttgttcatttccaccaggttttccagtttt
gttgagtatagacttttgtagtaggatctgataatattttgaatttcctc
aggttctgttgttatgtctcctttttcatctctgatttttgttacttaag
tacagtccctgtgccctcaaattatctggggtaagggtttatctgtcttg
ttgatttttcttaaagaaccagctcctggtttgggttgattcttgaatag
gtc

gaattcaaggctgacttatggtgcatagtaaaaaataaaaataaaaagta
aaaatataaaaaaccttcagaaaatgtttatgctgagatcttagtaagat
tctgattttaggggctttggtttctttattcagatatgtgatactatctc
atcataggtaacataattaagatatttcaaactttaaatgacatctaata
taaaagttacatgagaagaaaaatagtttgtcgttccattttaaaaatag
aatgcatgtgcttttgtaaatttgaatttaaaagaatgaaaattcatcca
ggcacactcatgctgggaatggaaatgtcttaaagtcatgatatcagaaa
actatgtcaggaaaggtctgcaaactgaccccacagtttgaccacatcag
tggacgtgtgcatatgtccttgcttctatttcatattttctctaaatacg
actggacagaagattaaaaggatattttctctctactgctcccgacaaaa
cagtaactaatcctctctttcacataacagctgaacttgccaatcaattt
catcacagacttttaccgattcctttctattattttttcatgtaataaac
atcaaatatcagctttctgtcaaacaccataaacaattctttaggtcagt
gaattgacatctttttacccctaccatgaatgatgtttatgaaaatcttt
ttatcttccccacactgtaaaaccttcatgcaaatattttaatcacctca
tactcacatacccaggaaaacttttgtttacacaaagtccctgttacaga
tactgaatataggtgatgtaagtggcccacccccttccactttcatttgt
ttcttttgtgctgattcatttaaactggccattcccaaaacatgttgagg
tcagtccctagccatagtaaaacaatcatctctgcattaagtaaagtcaa
gtgaatttcttatacagtgtgtacttactgtaccagtgtacactttcatc
tgtcaaatgctctctgcatgcattttgtctatttttgtgtattcgatttc
catattctgtgtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_13572146_13573227
seq2: B6Ng01-108I06.g_69_1133 (reverse)

seq1  AGTACACAGAAATATGGGAAATACGAAATACACAGAAATAGGACAAAAAT  50
      ||||||||| ||||| |||||| || |||||||| ||||| ||| |||||
seq2  AGTACACAG-AATAT-GGAAAT-CG-AATACACAAAAATA-GAC-AAAAT  44

seq1  GCATGCCAGAAGAGGCAATTTGACCAGGATGGAAAGTGTACACTGGTACA  100
      ||||||    ||||   |||||||   ||| |||||||||||||||||||
seq2  GCATGC----AGAGAGCATTTGAC--AGAT-GAAAGTGTACACTGGTACA  87

seq1  GTAAGTACACACTGGTATAAGAAATTCACTTGACTTTTACTTAATGCAGA  150
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  GTAAGTACACACT-GTATAAGAAATTCACTTGAC-TTTACTTAATGCAGA  135

seq1  GATGATTGTTTTACTATTGGCTAGGGACTGACCTCAACATGTTTTGGGAA  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATGATTGTTTTACTA-TGGCTAGGGACTGACCTCAACATGTTTTGGGAA  184

seq1  TGGCCAGTTTTAAATGAATCAGCACAAAAGAAACAAATGAAAGTGGAAGG  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAG-TTTAAATGAATCAGCACAAAAGAAACAAATGAAAGTGGAAGG  233

seq1  GGGTGGGCCACTTACATCACCTATATTCAGTATCTGTAACAGGGACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCCACTTACATCACCTATATTCAGTATCTGTAACAGGGACTTTG  283

seq1  TGTAAACAAAAGTTTTCCTGGGTATGTGAGTATGAGGTGATTAAAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACAAAAGTTTTCCTGGGTATGTGAGTATGAGGTGATTAAAATATT  333

seq1  TGCATGAAGGTTTTACAGTGTGGGGAAGATAAAAAGATTTTCATAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAAGGTTTTACAGTGTGGGGAAGATAAAAAGATTTTCATAAACAT  383

seq1  CATTCATGGTAGGGGTAAAAAGATGTCAATTCACTGACCTAAAGAATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGGTAGGGGTAAAAAGATGTCAATTCACTGACCTAAAGAATTGT  433

seq1  TTATGGTGTTTGACAGAAAGCTGATATTTGATGTTTATTACATGAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTGTTTGACAGAAAGCTGATATTTGATGTTTATTACATGAAAAAA  483

seq1  TAATAGAAAGGAATCGGTAAAAGTCTGTGATGAAATTGATTGGCAAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAAGGAATCGGTAAAAGTCTGTGATGAAATTGATTGGCAAGTTC  533

seq1  AGCTGTTATGTGAAAGAGAGGATTAGTTACTGTTTTGTCGGGAGCAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTATGTGAAAGAGAGGATTAGTTACTGTTTTGTCGGGAGCAGTAG  583

seq1  AGAGAAAATATCCTTTTAATCTTCTGTCCAGTCGTATTTAGAGAAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATATCCTTTTAATCTTCTGTCCAGTCGTATTTAGAGAAAATAT  633

seq1  GAAATAGAAGCAAGGACATATGCACACGTCCACTGATGTGGTCAAACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAGCAAGGACATATGCACACGTCCACTGATGTGGTCAAACTGT  683

seq1  GGGGTCAGTTTGCAGACCTTTCCTGACATAGTTTTCTGATATCATGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAGTTTGCAGACCTTTCCTGACATAGTTTTCTGATATCATGACTT  733

seq1  TAAGACATTTCCATTCCCAGCATGAGTGTGCCTGGATGAATTTTCATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACATTTCCATTCCCAGCATGAGTGTGCCTGGATGAATTTTCATTCT  783

seq1  TTTAAATTCAAATTTACAAAAGCACATGCATTCTATTTTTAAAATGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTCAAATTTACAAAAGCACATGCATTCTATTTTTAAAATGGAAC  833

seq1  GACAAACTATTTTTCTTCTCATGTAACTTTTATATTAGATGTCATTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACTATTTTTCTTCTCATGTAACTTTTATATTAGATGTCATTTAAA  883

seq1  GTTTGAAATATCTTAATTATGTTACCTATGATGAGATAGTATCACATATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAATATCTTAATTATGTTACCTATGATGAGATAGTATCACATATC  933

seq1  TGAATAAAGAAACCAAAGCCCCTAAAATCAGAATCTTACTAAGATCTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAGAAACCAAAGCCCCTAAAATCAGAATCTTACTAAGATCTCAG  983

seq1  CATAAACATTTTCTGAAGGTTTTTTATATTTTTACTTTTTATTTTTATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACATTTTCTGAAGGTTTTTTATATTTTTACTTTTTATTTTTATTT  1033

seq1  TTTACTATGCACCATAAGTCAGCCTTGAATTC  1082
      ||||||||||||||||||||||||||||||||
seq2  TTTACTATGCACCATAAGTCAGCCTTGAATTC  1065


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