BAC Information

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BAC

Clone NameB6Ng01-108J06
Chromosome11 (Build37)
Map Location 21,567,223 - 21,750,825
singlet/doubletdoublet
Overlap geneAV249152, Pgam1-ps1
Upstream geneAftph, 1110067D22Rik, LOC100042035, Peli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1
Downstream geneLOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108J06.bB6Ng01-108J06.g
ACCDH915728DH915729
length1,0771,049
definitionDH915728|Mus musculus domesticus DNA, BAC clone: B6Ng01-108J06, 5' end.DH915729|Mus musculus domesticus DNA, BAC clone: B6Ng01-108J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,567,223 - 21,568,306)(21,749,753 - 21,750,825)
sequence
gaattcaatttagttgaaatctcctttaaaaatctttaaaaggtccactt
gtttagaaatctttgaagaggctactgcagtataaaggattaacaaggat
gtaatctgaacttggatctttatgtcaaataaggagaatttacaagttgt
cattaccaaagcttagtttatattattgatccaatgacctataaattgtt
acatataaaatacttttctccacttacaaactcagaacattttacaagtc
aagggttacttagtataaaaaaattgtctttggagcttttgtattcaaaa
ctatccctattcgtagggattattgaaatctatacaatacaattagaatt
ttgatttcagcaactagtcaatatactcagttttgttttcttaatcaaca
gaattttttaatagtttgctgttttgactttcttaaaccacttatataaa
cttttttaatgaaaaaaatagtttcagttaaatactgttaaatagtttat
ctctcttatggaatgtgctatgggcatatcaataggttactttgtaataa
gttaaaaatgttttcattaagcatagatataacctaatatactgattttt
agattaaaatgtttgacacacacatataatctgtgtacacaagtgtacaa
atacaactttctgagtccattgttgttaatgtgcatatggtttgagggtt
gacaactctatattggataaccaatatgagggctcatctgtacaaaggct
aatttcccttttaccagcagtcattcattgcctaaggggggtctcctgtg
aaaatttctcctttctctctatattaacatgtccattgatacaacatgtc
cttccagtcttgtttttttttttttttttttagatttatttattattata
tgtaagtacactgtagctatcttcagacacaccagaagagggagtcagat
cttgttaccgatggttgtgagccaccatgtgttgctgggatttgactccg
gacttcggaagagcagtcggtggctctactcactgagccatcctcaccag
ccccagtctgttttatgcagctatttt
gaattctctattcactcttgaaaacaaaagaaaccatgaattacttagaa
ttttgctttagtctttttttctaggacaaagtttgtggtccatgtaccaa
attcaattgacagatgtttaacctacagtgtttaaaagttatttttagtt
acttaccaacactgaaaattggtaaacttttttttctttaaaatttcaca
ttattaaaaagatgatacattcttgcatgtgaaaaggatatgatatttag
acttcagtggctaaatgaagtctgactggagcatagccactgttgtttaa
cttgagtagtttaaactgagattctgtgacctacaaaactcaacatattt
cttgattcgtgaggaagtccttgaaccctgctgtggctcaaaatatttca
ttcccttgcttcttcttgtttcttttgtctcttgcagtgtttttactctc
tcttatcgtacacatgctcacaggacagaaaggcagcagtgaaaaattca
agagactggatatgatctctgctttaacagtcacctaagacaaactatct
catctctttgagcttctttttcctcacttgttcaacaaaagtgatagatt
agtcttgaacagtggcacacatctgtcatatcagcattggaagggagagg
caggaggattagcagttcaaggctagcttgggctgcagaacagattcttg
catcatgatagtacgttcctgaaatgttgggcataaagtctgagttgtcc
atttcaacaatggtttgactcaagacaattcagtgcagatcacatttgtt
atttgacatgatcttccacattattcttaaatctttctattttggtggct
ctgtgccttcaaagaagataccacccagtctccagaggattttcagggta
gacacatttcaaggtgtgtaatcacatggagatgaaatcttttataaatt
gtgaactgacagctcacctaacgaagccattaagtattacaagtacagct
gctcttgtaaatcaggtacagggatcaaatacagctgatagtgcagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_21567223_21568306
seq2: B6Ng01-108J06.b_43_1119

seq1  GAATTCAATTTAGTTGAAATCTCCTTTAAAAATCTTTAAAAGGTCCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAGTTGAAATCTCCTTTAAAAATCTTTAAAAGGTCCACTT  50

seq1  GTTTAGAAATCTTTGAAGAGGCTACTGCAGTATAAAGGATTAACAAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAAATCTTTGAAGAGGCTACTGCAGTATAAAGGATTAACAAGGAT  100

seq1  GTAATCTGAACTTGGATCTTTATGTCAAATAAGGAGAATTTACAAGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTGAACTTGGATCTTTATGTCAAATAAGGAGAATTTACAAGTTGT  150

seq1  CATTACCAAAGCTTAGTTTATATTATTGATCCAATGACCTATAAATTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCAAAGCTTAGTTTATATTATTGATCCAATGACCTATAAATTGTT  200

seq1  ACATATAAAATACTTTTCTCCACTTACAAACTCAGAACATTTTACAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAAATACTTTTCTCCACTTACAAACTCAGAACATTTTACAAGTC  250

seq1  AAGGGTTACTTAGTATAAAAAAATTGTCTTTGGAGCTTTTGTATTCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTACTTAGTATAAAAAAATTGTCTTTGGAGCTTTTGTATTCAAAA  300

seq1  CTATCCCTATTCGTAGGGATTATTGAAATCTATACAATACAATTAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCTATTCGTAGGGATTATTGAAATCTATACAATACAATTAGAATT  350

seq1  TTGATTTCAGCAACTAGTCAATATACTCAGTTTTGTTTTCTTAATCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCAGCAACTAGTCAATATACTCAGTTTTGTTTTCTTAATCAACA  400

seq1  GAATTTTTTAATAGTTTGCTGTTTTGACTTTCTTAAACCACTTATATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTAATAGTTTGCTGTTTTGACTTTCTTAAACCACTTATATAAA  450

seq1  CTTTTTTAATGAAAAAAATAGTTTCAGTTAAATACTGTTAAATAGTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTAATGAAAAAAATAGTTTCAGTTAAATACTGTTAAATAGTTTAT  500

seq1  CTCTCTTATGGAATGTGCTATGGGCATATCAATAGGTTACTTTGTAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTATGGAATGTGCTATGGGCATATCAATAGGTTACTTTGTAATAA  550

seq1  GTTAAAAATGTTTTCATTAAGCATAGATATAACCTAATATACTGATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAATGTTTTCATTAAGCATAGATATAACCTAATATACTGATTTTT  600

seq1  AGATTAAAATGTTTGACACACACATATAATCTGTGTACACAAGTGTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAAATGTTTGACACACACATATAATCTGTGTACACAAGTGTACAA  650

seq1  ATACAACTTTCTGAGTCCATTGTTGTTAATGTGCATATGGTTTGAGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACTTTCTGAGTCCATTGTTGTTAATGTGCATATGGTTTGAGGGTT  700

seq1  GACAACTCTATATTGGATAACCAATATGAGGGCTCATCTGTACAAAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTCTATATTGGATAACCAATATGAGGGCTCATCTGTACAAAGGCT  750

seq1  AATTTCCCTTTTACCAGCAGTCATTCATTGCCTAAGGGGGGTCTCCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCTTTTACCAGCAGTCATTCATTGCCTAAGGGGGGTCTCCTGTG  800

seq1  AAAATTTCTCCTTTCTCTCTATATTAACATGTCCATTGATACAACATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTCCTTTCTCTCTATATTAACATGTCCATTGATACAACATGTC  850

seq1  CTTCCAGTCTTGTTTTTTTTTTTTTTTTTTTTAGATTTATTTATTATTAT  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTCTTG-TTTTTTTTTTTTTTTTTTTAGATTTATTTATTATTAT  899

seq1  ATGTAAGTACACTGTAGCTATCTTCAGACACACCAGAAGAGGGAGTCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGTACACTGTAGCTATCTTCAGACACACCAGAAGAGGGAGTCAGA  949

seq1  TCTTGTTACCGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACT  1000
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  TCTTGTTACCGATGGTTGTGAGCCACCATGT-GTTGCTGGGATTTG-ACT  997

seq1  CCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACTCACTGAGCCAT-CTC  1049
      ||||| ||||||||||||||||||  |||| ||||||||||||||| |||
seq2  CCGGA-CTTCGGAAGAGCAGTCGGTGGCTC-TACTCACTGAGCCATCCTC  1045

seq1  ACCAGCCCCCAGTCTTGTTTTTATGCAGCTATTTT  1084
      ||||| |||||||||   |||||||||||||||||
seq2  ACCAG-CCCCAGTCT--GTTTTATGCAGCTATTTT  1077

seq1: chr11_21749753_21750825
seq2: B6Ng01-108J06.g_67_1115 (reverse)

seq1  TATCTTGCACTTATCAGCTTGTTTATTTTGATTCCCCTGTACCTGTATAT  50
      |||| ||||| ||||||| |||    ||||||  |||||||||||   ||
seq2  TATC-TGCAC-TATCAGC-TGT---ATTTGAT--CCCTGTACCTG---AT  39

seq1  CTAACAAGAGCAGCTGCTACTTTGTAAATACTTTAATGGCTTCTGTTAGG  100
       | ||||||||||||| ||| |||| ||||| ||||||||||| ||||||
seq2  -TTACAAGAGCAGCTG-TAC-TTGT-AATAC-TTAATGGCTTC-GTTAGG  83

seq1  TAGAGCTGTCAGTTTCACAATTTTATAAAAGATTTTCATTCTTCCATGTG  150
      | |||||||||| ||||||| ||||||||||| ||||||   ||||||||
seq2  T-GAGCTGTCAG-TTCACAA-TTTATAAAAGA-TTTCAT--CTCCATGTG  127

seq1  ATTACACACCTTGAAATGTGTCCTACCCTGAAAATCCTCTGGAGACTGGG  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTACACACCTTGAAATGTGT-CTACCCTGAAAATCCTCTGGAGACTGGG  176

seq1  TGGTATCTTCTTTGAAGGCACAGAGCCAACAAAATAGAAAGATTTAAGAA  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGTATCTTCTTTGAAGGCACAGAGCCACCAAAATAGAAAGATTTAAGAA  226

seq1  TAATGTGGAAGATCATGTCAAATAACAAATGTGATCTGCACTGAATTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGGAAGATCATGTCAAATAACAAATGTGATCTGCACTGAATTGTC  276

seq1  TTGAGTCAAACCATTGTTGAAATGGACAACTCAGACTTTATGCCCAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCAAACCATTGTTGAAATGGACAACTCAGACTTTATGCCCAACAT  326

seq1  TTCAGGAACGTACTATCATGATGCAAGAATCTGTTCTGCAGCCCAAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAACGTACTATCATGATGCAAGAATCTGTTCTGCAGCCCAAGCTA  376

seq1  GCCTTGAACTGCTAATCCTCCTGCCTCTCCCTTCCAATGCTGATATGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAACTGCTAATCCTCCTGCCTCTCCCTTCCAATGCTGATATGACA  426

seq1  GATGTGTGCCACTGTTCAAGACTAATCTATCACTTTTGTTGAACAAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGCCACTGTTCAAGACTAATCTATCACTTTTGTTGAACAAGTGA  476

seq1  GGAAAAAGAAGCTCAAAGAGATGAGATAGTTTGTCTTAGGTGACTGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAAGCTCAAAGAGATGAGATAGTTTGTCTTAGGTGACTGTTAA  526

seq1  AGCAGAGATCATATCCAGTCTCTTGAATTTTTCACTGCTGCCTTTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGATCATATCCAGTCTCTTGAATTTTTCACTGCTGCCTTTCTGTC  576

seq1  CTGTGAGCATGTGTACGATAAGAGAGAGTAAAAACACTGCAAGAGACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCATGTGTACGATAAGAGAGAGTAAAAACACTGCAAGAGACAAA  626

seq1  AGAAACAAGAAGAAGCAAGGGAATGAAATATTTTGAGCCACAGCAGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGAAGAAGCAAGGGAATGAAATATTTTGAGCCACAGCAGGGTT  676

seq1  CAAGGACTTCCTCACGAATCAAGAAATATGTTGAGTTTTGTAGGTCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACTTCCTCACGAATCAAGAAATATGTTGAGTTTTGTAGGTCACAG  726

seq1  AATCTCAGTTTAAACTACTCAAGTTAAACAACAGTGGCTATGCTCCAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGTTTAAACTACTCAAGTTAAACAACAGTGGCTATGCTCCAGTC  776

seq1  AGACTTCATTTAGCCACTGAAGTCTAAATATCATATCCTTTTCACATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCATTTAGCCACTGAAGTCTAAATATCATATCCTTTTCACATGCA  826

seq1  AGAATGTATCATCTTTTTAATAATGTGAAATTTTAAAGAAAAAAAAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTATCATCTTTTTAATAATGTGAAATTTTAAAGAAAAAAAAGTTT  876

seq1  ACCAATTTTCAGTGTTGGTAAGTAACTAAAAATAACTTTTAAACACTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTTCAGTGTTGGTAAGTAACTAAAAATAACTTTTAAACACTGTA  926

seq1  GGTTAAACATCTGTCAATTGAATTTGGTACATGGACCACAAACTTTGTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAACATCTGTCAATTGAATTTGGTACATGGACCACAAACTTTGTCC  976

seq1  TAGAAAAAAAGACTAAAGCAAAATTCTAAGTAATTCATGGTTTCTTTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAAAGACTAAAGCAAAATTCTAAGTAATTCATGGTTTCTTTTGT  1026

seq1  TTTCAAGAGTGAATAGAGAATTC  1073
      |||||||||||||||||||||||
seq2  TTTCAAGAGTGAATAGAGAATTC  1049