BAC Information

Click to search

BAC

Clone NameB6Ng01-108J13
Chromosome11 (Build37)
Map Location 50,013,820 - 50,154,699
singlet/doubletdoublet
Overlap geneSqstm1, Mgat4b, Ltc4s, Maml1, Canx
Upstream geneZfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik
Downstream gene1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108J13.bB6Ng01-108J13.g
ACCDH915740DH915741
length1,1771,158
definitionDH915740|Mus musculus domesticus DNA, BAC clone: B6Ng01-108J13, 5' end.DH915741|Mus musculus domesticus DNA, BAC clone: B6Ng01-108J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,013,820 - 50,015,021)(50,153,537 - 50,154,699)
sequence
gaattctccattccctaggagctgtaggcccctgcctgccacctttcact
cactatggacagtcccctcttaacataatggctttatttgttgaaaataa
ctagcagttgtactaatcacttttaataaaggaaacacgggttgtcaggc
aggaattctggactgctggtgcaatgctggcggcaagagcaggtgggagt
gcagtgtgtgctgcagttccctgcagaggccaggcctagggaaagcagag
gaagctcagctcagccacgggtacctgggtctgttctcaggcgtcagcat
atgcacattcaaaactctcctcatgcactttcctattgcctgaaaaggca
tcacacattcccacctgaagattctacaagaatgccaagacactgggcct
atctatagaagccctgctgctctacgtgatgcaactacaagacaaagggg
gtggggcttggccacagcactatcacaatggtggagggtgcttcgaatac
tggatcgtgtccagagcagccccgatgtcgtaattcttggtctgtaggag
cctggtgagccagccgccttcatccgagaaacccatggacagcatctggg
agagggactcaatcagccggggatcagcctctgccaaaacaagacaggaa
agtaaggtatcctgctgcattcccagcagagcagctcctgcctgccagga
agaccccacccctctgcttagccttatagggaccctcaaaggctaaagga
tcagacagcttgcttggcagactctccagtcctggtcacaactgttcagt
tctgccactgaagtacaaaacagccagaaggtatgtagacaaataagtgc
agctgttttcctataaagttttattgacagatgtgatagctcaagcctgt
tatcccaacactcaagagctggaagcaggaacatcgtgggcacagtgaga
cgccatctcaaaccaacaaccaaaatcctttatagattaaaaaaaaaatc
tctaactgcgtgttgtactcgtggttcccacgtgggtgaacatttatgtt
gtaaaggggtggagccagagctgaagtaggcttcctctatggtctccact
ggattgagtaggacctgtggagcatgctaacatccactgagccacttcca
gagtcgtctgcctctagcctggaacta
gaattccaagacagctagagctacaacagagaaacatgcctcaaaaaaac
taaaactaactaactaactaaacctttgtgctaggcatgatgacataagc
ttttattcctagcactgagaaaatagaggcaaacagatctcttggttcca
gctctacctggttatatagtgagaccctgtctctaacacatgtaaaaaag
aaaaatctttgatgagagctgaggatttatacagtggtagagtgttgtct
taggatgcataaggccctgagttcagcactgcagaaatgtcttgtgatgg
ccgggcgtggtggcgcatacctgaaatcccagcacttgcgatgcagaggc
aggcagatttctgagtttgaggccagtctggtctacagagtgagttccag
gacagccagggctacagagaaaccctgtctcaaaaaaacagaaaaaaata
aaaaaaattaaaattaatgtcttatgatttatatttatagactagatata
aatgaataattttatttgttttttgtaactgagctacatgtctacttaaa
tgaatactttaaaagtaggtttatgtttatgtgtactcagataagcctat
gtggggttaatctctagcccatgtgtgcttgctttgtctggaccaatccc
tttttacctggaagcttgctatcactttgatgaacacctgaggtattctg
cacataacagaactctgttcgagctttgagcttccaaaatagactcgggg
cagtcgtcctaaatgaaaaaagcctgtcccctccccccttttgaggacag
gttctttgaagccctatcctgtttacttcagtagcacctcctaccccgcc
cagtgctggtgttatacagtcttgtacggccttgctagctttaaagttat
gtgaagaatatttctgtgcccattaactaatttctgtcatcatttcagcc
tatttgcctgtttctaagtgttcatatacatataagtcattttttggaaa
ggattattttatatatattgagtggcactgtagctgacttcagaccacca
gaaggaggcatcgggattccattagattgtgtgagcaccatggggttgcc
tggactgactcagaactctgggagagacagggctgctcttagcactgagc
catatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50013820_50015021
seq2: B6Ng01-108J13.b_49_1225

seq1  GAATTCTCCATTCCCTAGGAGCTGTAGGCCCCTGCCTGCCACCTTTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTCCCTAGGAGCTGTAGGCCCCTGCCTGCCACCTTTCACT  50

seq1  CACTATGGACAGTCCCCTCTTAACATAATGGCTTTATTTGTTGAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGGACAGTCCCCTCTTAACATAATGGCTTTATTTGTTGAAAATAA  100

seq1  CTAGCAGTTGTACTAATCACTTTTAATAAAGGAAACACGGGTTGTCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGTTGTACTAATCACTTTTAATAAAGGAAACACGGGTTGTCAGGC  150

seq1  AGGAATTCTGGACTGCTGGTGCAATGCTGGCGGCAAGAGCAGGTGGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTCTGGACTGCTGGTGCAATGCTGGCGGCAAGAGCAGGTGGGAGT  200

seq1  GCAGTGTGTGCTGCAGTTCCCTGCAGAGGCCAGGCCTAGGGAAAGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGTGCTGCAGTTCCCTGCAGAGGCCAGGCCTAGGGAAAGCAGAG  250

seq1  GAAGCTCAGCTCAGCCACGGGTACCTGGGTCTGTTCTCAGGCGTCAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCAGCTCAGCCACGGGTACCTGGGTCTGTTCTCAGGCGTCAGCAT  300

seq1  ATGCACATTCAAAACTCTCCTCATGCACTTTCCTATTGCCTGAAAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATTCAAAACTCTCCTCATGCACTTTCCTATTGCCTGAAAAGGCA  350

seq1  TCACACATTCCCACCTGAAGATTCTACAAGAATGCCAAGACACTGGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATTCCCACCTGAAGATTCTACAAGAATGCCAAGACACTGGGCCT  400

seq1  ATCTATAGAAGCCCTGCTGCTCTACGTGATGCAACTACAAGACAAAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAGAAGCCCTGCTGCTCTACGTGATGCAACTACAAGACAAAGGGG  450

seq1  GTGGGGCTTGGCCACAGCACTATCACAATGGTGGAGGGTGCTTCGAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTTGGCCACAGCACTATCACAATGGTGGAGGGTGCTTCGAATAC  500

seq1  TGGATCGTGTCCAGAGCAGCCCCGATGTCGTAATTCTTGGTCTGTAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCGTGTCCAGAGCAGCCCCGATGTCGTAATTCTTGGTCTGTAGGAG  550

seq1  CCTGGTGAGCCAGCCGCCTTCATCCGAGAAACCCATGGACAGCATCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGAGCCAGCCGCCTTCATCCGAGAAACCCATGGACAGCATCTGGG  600

seq1  AGAGGGACTCAATCAGCCGGGGATCAGCCTCTGCCAAAACAAGACAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGACTCAATCAGCCGGGGATCAGCCTCTGCCAAAACAAGACAGGAA  650

seq1  AGTAAGGTATCCTGCTGCATTCCCAGCAGAGCAGCTCCTGCCTGCCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGTATCCTGCTGCATTCCCAGCAGAGCAGCTCCTGCCTGCCAGGA  700

seq1  AGACCCCACCCCTCTGCTTAGCCTTATAGGGACCCTCAAAGGCTAAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCACCCCTCTGCTTAGCCTTATAGGGACCCTCAAAGGCTAAAGGA  750

seq1  TCAGACAGCTTGCTTGGCAGACTCTCCAGTCCTGGTCACAACTGTTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGCTTGCTTGGCAGACTCTCCAGTCCTGGTCACAACTGTTCAGT  800

seq1  TCTGCCACTGAAGTACAAAACAGCCAGAAGGTATGTAGACAAATAAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACTGAAGTACAAAACAGCCAGAAGGTATGTAGACAAATAAGTGC  850

seq1  AGCTGTTTTCCTATAAAGTTTTATTGACAGATGTGATAGCTCAAGCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTTCCTATAAAGTTTTATTGACAGATGTGATAGCTCAAGCCTGT  900

seq1  AATCCCAACACTCAAGAGCTGGAAGCAGGAACATCGTGGGCAACAGTGAG  950
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATCCCAACACTCAAGAGCTGGAAGCAGGAACATCGTGGGC-ACAGTGAG  949

seq1  ACGCCATCTCAAAACCAACCAACCAAAATCCTTTATAGATTAAAAAAAAA  1000
      |||||||||| ||||||| ||||||||||||||||||||||  |||||||
seq2  ACGCCATCTC-AAACCAA-CAACCAAAATCCTTTATAGATT--AAAAAAA  995

seq1  AAATCTCTAACTGCCGTG-TGTACTCGT-GTTCCCACGTGGGTGAACATG  1048
      ||||||||||||| |||| ||||||||| |||||||||||||||||||| 
seq2  AAATCTCTAACTG-CGTGTTGTACTCGTGGTTCCCACGTGGGTGAACATT  1044

seq1  TATG-TGTAAAGGTGTGGAAGCCCAGAGCTGAAGTAAGGCTTTTCCTCTA  1097
      |||| |||||||| |||||   ||||||||||||| ||||  ||||||||
seq2  TATGTTGTAAAGGGGTGGA--GCCAGAGCTGAAGT-AGGC--TTCCTCTA  1089

seq1  TGGCTCTCCACTTGATTGAGTTAGGGTCTCTGTGAGCCAATAGCTTACCA  1147
      ||| |||||||| ||||||| ||||  || || ||||  || ||| ||  
seq2  TGG-TCTCCACTGGATTGAG-TAGGACCTGTG-GAGC--AT-GCTAAC--  1131

seq1  ATCCCACTGAGCCACTTGTACAGGAAGTCTGTCTGCCTCCTAAGGCCTGG  1197
      || |||||||||||||  | |||  |||| |||||||| |||  ||||||
seq2  AT-CCACTGAGCCACT--TCCAG--AGTC-GTCTGCCT-CTA--GCCTGG  1172

seq1  GACTA  1202
       ||||
seq2  AACTA  1177

seq1: chr11_50153537_50154699
seq2: B6Ng01-108J13.g_68_1225 (reverse)

seq1  GAGAGATGGCTCAGTGGTTAAGAGCAGCCACTG-CTCTTCCAGAGGTCCT  49
      |||| |||||||||| | ||||||||||| ||| |||| ||||| || ||
seq2  GAGATATGGCTCAGT-GCTAAGAGCAGCC-CTGTCTCTCCCAGA-GTTCT  47

seq1  GAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGGG  99
      ||| |||| |||  |||||| |||||| |||||| || |||  |||||| 
seq2  GAG-TCAG-TCCAGGCAACCCCATGGT-GCTCAC-ACAATC--TAATGGA  91

seq1  AT-CCGATGCCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTG-CACTC-  146
      || ||||||||  ||||||||| |||||||||||||||||||| ||||| 
seq2  ATCCCGATGCCTCCTTCTGGTG-GTCTGAAGTCAGCTACAGTGCCACTCA  140

seq1  ATATATAT-AAATAATTCTTTTCAAAAAATGACTATAATGTATATGAACA  195
      |||||||| ||||||| |||| ||||||||||||   |||||||||||||
seq2  ATATATATAAAATAATCCTTTCCAAAAAATGACTTATATGTATATGAACA  190

seq1  CTTAGAAACAAGGCAAATAGGCTGAAATGATGACAGAAATTAGTTAATGG  245
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAC-AGGCAAATAGGCTGAAATGATGACAGAAATTAGTTAATGG  239

seq1  GCACAGAAATATTCTTCACATAACTTTAAAGCTAGCAAGGCCGTACAAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAATATTCTTCACATAACTTTAAAGCTAGCAAGGCCGTACAAGA  289

seq1  CTGTATAACACCAGCACTGGGCGGGGTAGGAGGTGCTACTGAAGT-AACA  344
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGTATAACACCAGCACTGGGCGGGGTAGGAGGTGCTACTGAAGTAAACA  339

seq1  GGATAGGGCTTCAAAGAACCTGTCCTCAAAAGGGGGGAGGGGACAGGCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGGCTTCAAAGAACCTGTCCTCAAAAGGGGGGAGGGGACAGGCTT  389

seq1  TTTTCATTTAGGACGACTGCCCCGAGTCTATTTTGGAAGCTCAAAGCTCG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTAGGACGACTGCCCCGAGTCTATTTTGGAAGCTCAAAGCTCG  439

seq1  AACAGAGTTCTGTTATGTGCAGAATACCTCAGGTGTTCATCAAAGTGATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTTCTGTTATGTGCAGAATACCTCAGGTGTTCATCAAAGTGATA  489

seq1  GCAAGCTTCCAGGTAAAAAGGGATTGGTCCAGACAAAGCAAGCACACATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTTCCAGGTAAAAAGGGATTGGTCCAGACAAAGCAAGCACACATG  539

seq1  GGCTAGAGATTAACCCCACATAGGCTTATCTGAGTACACATAAACATAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAGATTAACCCCACATAGGCTTATCTGAGTACACATAAACATAAA  589

seq1  CCTACTTTTAAAGTATTCATTTAAGTAGACATGTAGCTCAGTTACAAAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTTAAAGTATTCATTTAAGTAGACATGTAGCTCAGTTACAAAAA  639

seq1  ACAAATAAAATTATTCATTTATATCTAGTCTATAAATATAAATCATAAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAAATTATTCATTTATATCTAGTCTATAAATATAAATCATAAGA  689

seq1  CATTAATTTTAATTTTTTTTATTTTTTTCTGTTTTTTTGAGACAGGGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTTTAATTTTTTTTATTTTTTTCTGTTTTTTTGAGACAGGGTTT  739

seq1  CTCTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGACTGGCCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGACTGGCCT  789

seq1  CAAACTCAGAAATCTGCCTGCCTCTGCATCGCAAGTGCTGGGATTTCAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGAAATCTGCCTGCCTCTGCATCGCAAGTGCTGGGATTTCAGG  839

seq1  TATGCGCCACCACGCCCGGCCATCACAAGACATTTCTGCAGTGCTGAACT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGCCACCACGCCCGGCCATCACAAGACATTTCTGCAGTGCTGAACT  889

seq1  CAGGGCCTTATGCATCCTAAGACAACACTCTACCACTGTATAAATCCTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTTATGCATCCTAAGACAACACTCTACCACTGTATAAATCCTCA  939

seq1  GCTCTCATCAAAGATTTTTCTTTTTTACATGTGTTAGAGACAGGGTCTCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATCAAAGATTTTTCTTTTTTACATGTGTTAGAGACAGGGTCTCA  989

seq1  CTATATAACCAGGTAGAGCTGGAACCAAGAGATCTGTTTGCCTCTATTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAACCAGGTAGAGCTGGAACCAAGAGATCTGTTTGCCTCTATTTT  1039

seq1  CTCAGTGCTAGGAATAAAAGCTTATGTCATCATGCCTAGCACAAAGGTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCTAGGAATAAAAGCTTATGTCATCATGCCTAGCACAAAGGTTT  1089

seq1  AGTTAGTTAGTTAGTTTTAGTTTTTTTGAGGCATGTTTCTCTGTTGTAGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTAGTTAGTTTTAGTTTTTTTGAGGCATGTTTCTCTGTTGTAGC  1139

seq1  TCTAGCTGTCTTGGAATTC  1163
      |||||||||||||||||||
seq2  TCTAGCTGTCTTGGAATTC  1158