BAC Information

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BAC

Clone NameB6Ng01-109N02
Chromosome11 (Build37)
Map Location 13,241,346 - 13,363,172
singlet/doubletdoublet
Overlap genenone
Upstream geneCobl, LOC627244
Downstream geneLOC432535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109N02.bB6Ng01-109N02.g
ACCDH916619DH916620
length1,0981,074
definitionDH916619|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N02, 5' end.DH916620|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,241,346 - 13,242,072)(13,362,075 - 13,363,172)
sequence
gaattctcattttagttctataccccatttttgaattagtttgttgttgt
tgttatcttcatgagataggattttagaacagattcctaattttcaggtg
tgttggtgcattcagggcttgctgtttgtaagagagctgggttctgatga
ggcctacatatattcgcttctgttgcttatgttgttgtgcttgtcactca
ccatgtgactatctctggtgtttgttggtctgtgtgactgtctggagtct
gcctcttttgtccctggattgcttcaggtctcctggtaggcctgcaacac
tggctgtatcacaccatgtgtaggaccttccaatggggggctctttagag
gggcagagaagctactgatctgttgcccttgctgcagtagatctcctggc
atgaggggggagtgcttcagactgtttggtctttggtgaagcagtcatgc
tgttgtcctatgtgaagatgttttccaagggggcctaagaactatggttt
ctgtttccaggtgtgcagcagaactccagggaggtttgcagtctgtcagg
tcaggtgccctgcttgccttcaagctgtggtgtcaactactctgattgca
gctgatcctctatgatggatcaaaatatggtgtctttgggagcagaccaa
ccagcagtcagctgctctgagtgcagtggatcctcaactgctctgaacat
agcagatcctctagcatagatatgttgtctttgctggaacagaccagcta
ggaatgtccccccaggagaaaggactctgaggaaagggcagaaggagagt
tttgggtgggtgataggtcctgaatacactggactcccagaggcagcttc
tggaactgggggatgggcttctttttgtttgttgtttgttttgaataatc
actttatatggctttgaatttccatgcttagagagcatattatgacaatt
cacacatgcaaccttacattaatattcaatttggttaaggatatgcatct
ttcatcatcatgtttttgtgttgagtgtcccccccttggtagttttcttt
tctttatttattaatcaatatttgcttcattacaattcaatggctatc
gaattcatacccaaagaaatccaagtcaatatagtgcacagatagtactt
ttgagtgtgattgtaccaacagtcattagagctgtactataaaatgaact
tgtgttcaatatcagagaagcaatgaagaaaatgttgtgtattcacacag
tgaatttttttttcagtgggacaaacaaagttaggtcgggtagaggaaaa
atggataaaacacatggtgaaataagttagtattattaaaacaagtcagg
ctcagaaagacaaacaatatatgtattctttcatttgtagcacatacatg
ctgtgtatatatactatttataacataaaaatatacactatattaaaata
taatacatcaaaatatgtgtacatgacatgaaaatagaaatgaaaccatg
agtgatacatggaaactaagatgatggaaggctgaattgtgggagatggg
gttaatatggggaaaatagtctcaatattcattgtatgcttgaatgaaaa
cactgttatatgtttcagtgccatagatatacactaaaacaaactaaaaa
tagcatataaaatagaaaatccagagcaagtataatgcagagttgtaggg
gtccatcaatgcctaaagtcattcattttgataaaggtgagccagtgtgg
caatggagaacctacagagagttttcatgcggagtggaccatgtccttca
ggagaactgagattcctatcaaagtaacatatatagaaataatctaccct
agtgatggctggaagactcatccatctcaacctttaccttgaatgaagaa
gggtaaatgatctcctgtgaaaaataaagctgctagtcatgcctttgtca
gagtatagagagcatatctatgatgcttgcatgttttaacagagagtaaa
caaagacaatcaataaacttgccagtgtaactctttccagttagcatttc
atatatgactaattgatgaaaactaaatgcatacttcttaaccattgtac
aagtatacatcagaaaacattgggaatatatcagcattacaagttaagac
cactcagcaggagctgtaagttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_13241346_13242072
seq2: B6Ng01-109N02.b_429_1144

seq1  TGCAGTAGATCTCCTGGCATGAGGGGGGAGTGCTTCAGACTGTTTGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAGATCTCCTGGCATGAGGGGGGAGTGCTTCAGACTGTTTGGTCT  50

seq1  TTGGTGAAGCAGTCATGCTGTTGTCCTATGTGAAGATGTTTTCCAAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAAGCAGTCATGCTGTTGTCCTATGTGAAGATGTTTTCCAAGGGG  100

seq1  GCCTAAGAACTATGGTTTCTGTTTCCAGGTGTGCAGCAGAACTCCAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGAACTATGGTTTCTGTTTCCAGGTGTGCAGCAGAACTCCAGGGA  150

seq1  GGTTTGCAGTCTGTCAGGTCAGGTGCCCTGCTTGCCTTCAAGCTGTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCAGTCTGTCAGGTCAGGTGCCCTGCTTGCCTTCAAGCTGTGGTG  200

seq1  TCAACTACTCTGATTGCAGCTGATCCTCTATGATGGATCAAAATATGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTACTCTGATTGCAGCTGATCCTCTATGATGGATCAAAATATGGTG  250

seq1  TCTTTGGGAGCAGACCAACCAGCAGTCAGCTGCTCTGAGTGCAGTGGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGAGCAGACCAACCAGCAGTCAGCTGCTCTGAGTGCAGTGGATC  300

seq1  CTCAACTGCTCTGAACATAGCAGATCCTCTAGCATAGATATGTTGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTGCTCTGAACATAGCAGATCCTCTAGCATAGATATGTTGTCTTT  350

seq1  GCTGGAACAGACCAGCTAGGAATGTCCCCCCAGGAGAAAGGACTCTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAACAGACCAGCTAGGAATGTCCCCCCAGGAGAAAGGACTCTGAGG  400

seq1  AAAGGGCAGAAGGAGAGTTTTGGGTGGGTGATAGGTCCTGAATACACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCAGAAGGAGAGTTTTGGGTGGGTGATAGGTCCTGAATACACTGG  450

seq1  ACTCCCAGAGGCAGC-TCTGGAACTGGGGGATGGGCTTCTTTTTTGTTTG  499
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  ACTCCCAGAGGCAGCTTCTGGAACTGGGGGATGGGCTTC-TTTTTGTTTG  499

seq1  TTTGTTTGTTTTGAAT-ATCACTTTATTATTGCTTTGAATTTCCATGCTT  548
       ||||||||||||||| ||||||||| ||| |||||||||||||||||||
seq2  -TTGTTTGTTTTGAATAATCACTTTA-TATGGCTTTGAATTTCCATGCTT  547

seq1  AGAGAGCATAGTATGACAATTCAACACATGCAAACCTTACA-TAATATTC  597
      |||||||||| ||||||||||| |||||||| ||||||||| ||||||||
seq2  AGAGAGCATATTATGACAATTC-ACACATGC-AACCTTACATTAATATTC  595

seq1  AAATTTGGTTAAGGATATGCATCTTTTCATTCATCATGTTTTTGTGTTGA  647
       |||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  -AATTTGGTTAAGGATATGCATC-TTTCA-TCATCATGTTTTTGTGTTGA  642

seq1  GTGTCCCCCCCCTTGGTAGTTTTTCTTTTTCTTTTTATTTATTATTCAAT  697
      |||| |||||||||||||| ||||||||   | ||||||||||| |||||
seq2  GTGT-CCCCCCCTTGGTAG-TTTTCTTT---TCTTTATTTATTAATCAAT  687

seq1  ATTTTCTTCATTTACAATTCAAATGCTATC  727
      |||| ||||| |||||||||||  ||||||
seq2  ATTTGCTTCA-TTACAATTCAATGGCTATC  716

seq1: chr11_13362075_13363172
seq2: B6Ng01-109N02.g_66_1139 (reverse)

seq1  TTAACTTTACAGCTCCTGCTGAGT-GTCTTTATATCTTGTATTTTGGCTG  49
      ||||| |||||||||||||||||| ||||   || |||||| |   ||||
seq2  TTAAC-TTACAGCTCCTGCTGAGTGGTCT---TAACTTGTAAT---GCTG  43

seq1  AATTAATATATCCCATATGTTTTCTGTTGTAATACTTGGTACAATGGTTT  99
           |||||| ||  |||||||||| ||| |||||| ||||||||| ||
seq2  -----ATATATTCCCAATGTTTTCTGATGT-ATACTT-GTACAATGG-TT  85

seq1  AAGAAGGTATGCATTTTAGTTTTTCATCAATTAGTCATATATGGAAATGC  149
      ||||| ||||||| ||||| |||||||||||||||||||||| |||||||
seq2  AAGAA-GTATGCA-TTTAG-TTTTCATCAATTAGTCATATAT-GAAATGC  131

seq1  TAACTTGGAAAGAGTTTACACTGGCAAGTTTATTTTGATTGTCTTTTGTT  199
      |||| ||||||||| |||||||||||||||||  ||||||||||||   |
seq2  TAAC-TGGAAAGAG-TTACACTGGCAAGTTTA--TTGATTGTCTTT--GT  175

seq1  TTACTCTCTGTTAAAAACATGCAAGCATCATAGATATGCTCTCTATACTC  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCTGTT-AAAACATGCAAGCATCATAGATATGCTCTCTATACTC  224

seq1  TGAC-AAGGCATGACTAGCAGCCTTATTTTTCACAGGAGATCATTTACCC  298
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGACAAAGGCATGACTAGCAGCTTTATTTTTCACAGGAGATCATTTACCC  274

seq1  TTCTTCATTCAAGGTAAAGGTTGAGATGGATGAGTCTTCCAGCCATCACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTCAAGGTAAAGGTTGAGATGGATGAGTCTTCCAGCCATCACT  324

seq1  AGGGTAGATTATTTCTATATATGTTACTTTGATAGGAATCTCAGTTCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGATTATTTCTATATATGTTACTTTGATAGGAATCTCAGTTCTCC  374

seq1  TGAAGGACATGGTCCACTCCGCATGAAAACTCTCTGTAGGTTCTCCATTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACATGGTCCACTCCGCATGAAAACTCTCTGTAGGTTCTCCATTG  424

seq1  CCACACTGGCTCACCTTTATCAAAATGAATGACTTTAGGCATTGATGGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGGCTCACCTTTATCAAAATGAATGACTTTAGGCATTGATGGAC  474

seq1  CCCTACAACTCTGCATTATACTTGCTCTGGATTTTCTATTTTATATGCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACAACTCTGCATTATACTTGCTCTGGATTTTCTATTTTATATGCTA  524

seq1  TTTTTAGTTTGTTTTAGTGTATATCTATGGCACTGAAACATATAACAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTTTGTTTTAGTGTATATCTATGGCACTGAAACATATAACAGTG  574

seq1  TTTTCATTCAAGCATACAATGAATATTGAGACTATTTTCCCCATATTAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCAAGCATACAATGAATATTGAGACTATTTTCCCCATATTAAC  624

seq1  CCCATCTCCCACAATTCAGCCTTCCATCATCTTAGTTTCCATGTATCACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCCCACAATTCAGCCTTCCATCATCTTAGTTTCCATGTATCACT  674

seq1  CATGGTTTCATTTCTATTTTCATGTCATGTACACATATTTTGATGTATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTCATTTCTATTTTCATGTCATGTACACATATTTTGATGTATTA  724

seq1  TATTTTAATATAGTGTATATTTTTATGTTATAAATAGTATATATACACAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATATAGTGTATATTTTTATGTTATAAATAGTATATATACACAG  774

seq1  CATGTATGTGCTACAAATGAAAGAATACATATATTGTTTGTCTTTCTGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTGCTACAAATGAAAGAATACATATATTGTTTGTCTTTCTGAG  824

seq1  CCTGACTTGTTTTAATAATACTAACTTATTTCACCATGTGTTTTATCCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTGTTTTAATAATACTAACTTATTTCACCATGTGTTTTATCCAT  874

seq1  TTTTCCTCTACCCGACCTAACTTTGTTTGTCCCACTGAAAAAAAAATTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTACCCGACCTAACTTTGTTTGTCCCACTGAAAAAAAAATTCA  924

seq1  CTGTGTGAATACACAACATTTTCTTCATTGCTTCTCTGATATTGAACACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGAATACACAACATTTTCTTCATTGCTTCTCTGATATTGAACACA  974

seq1  AGTTCATTTTATAGTACAGCTCTAATGACTGTTGGTACAATCACACTCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTTTATAGTACAGCTCTAATGACTGTTGGTACAATCACACTCAA  1024

seq1  AAGTACTATCTGTGCACTATATTGACTTGGATTTCTTTGGGTATGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTATCTGTGCACTATATTGACTTGGATTTCTTTGGGTATGAATTC  1074