BAC Information

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BAC

Clone NameB6Ng01-110D08
Chromosome11 (Build37)
Map Location 117,184,323 - 117,350,399
singlet/doubletdoublet
Overlap geneSept9, EG667423
Upstream geneFoxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1
Downstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110D08.bB6Ng01-110D08.g
ACCDH916897DH916898
length1,1191,127
definitionDH916897|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D08, 5' end.DH916898|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,349,264 - 117,350,399)(117,184,323 - 117,185,456)
sequence
gaattccttagaacaggtttctagaggctgtactgctgcagctgagatcc
aacaagacaggactcttatgatgagacaatgaatttatttgggttacata
tagaaacatggaggactcaaaatcagctgcatcacccaaagcccattcta
gcatgggtgagactcatgaaaggtagaaccttgaatttctctgcacaaca
tgtagaactcctctccttagcaattcttaccacctatttaaccttgggca
gggaagggctttgtgaaacttgtaagtttcagggacttcctgagacttgt
gagttgcttatttcctgaatcttaaggagtttctctacaggatggaatgt
tacaactgggaagaaattgctgtactgcacctgcccctactcctaccgcc
atcaactttcctggactctagaaagtcactgagggaatagtgaaagactg
gcgccactgttgggccagtctaggcagagcgggacataacacaggaaact
cacattcttagacatgctcaggcttataaagtattcaggaaaaagggagg
gaatagaagtttctaaggaagatacatgctcaggatgctaatccaggcct
gagcattttccactgatggaaagctgatgtctgtttcaactttggtgaat
tctgagatcataaatcattcctaccccttctccaagttccagaggctatt
cttctggccctctgtccccactcggcattctgttatagttgtgcccatag
tggctgcagggtgaagatctaccccattcagtttcaactatgaatagtat
aggctataaaaccaaatgagcctcattgtgctcaaactgagtaagcagat
taaaaaatgggtgggtttgggattagagtcgagtggttggctcctgggca
gcgatgtgtaccagggaacagagctgatagaattcatattcacatctacc
cagctactttcctacccatctataaaggggatttactagtagattaccag
caaggactgggcagaccacatgctcatctgagtgcagagagctcagtgag
ttgatactcaacagtctcatcctgtgctagagcctgcagcgtcctggagt
cctgatcttcagtcatatt
gaattctctggtgtgactgcagctctggaactttctagatgcttctagat
tactaccagctcaggctggaagacagtttcccttcccacctctggtggga
aagaaactgggaacaaaacttctagttccccttttcacaggtggagaggc
ccacctgtttccattcttgacttgggtgttcttctcaggcttgcagttat
acagatagggtcatgaaaaggtcacaggcccgagttctcactccttatct
gaaatgctcttctccctggcagcaaaaagccctcaggatgtcagtcagtg
tggacagacccgagacccgcttgctgcgtgtcattgtccacaccccccat
cctcactccacccgacccccagtctccctctctgagccccacctgtggaa
ttctgctggctcctgtggctgaagatgctgggcctgtgacaggaggtgcc
cgtggtccattcctcccttctcggagagctcgctcttgcaaagctgggac
accagtggccgtgagatcgcgtctctctgagttgagcggggagtggatgg
accagctccatgcagcccagccactgtgatcatcttgtcctggactggac
atgccaaggggcactctgacacttgccaccgccatgtctctagcccttcc
tcctccctgataccctggagggacttccccgggacttgcaaagcctttgc
cccttcaagtcccttgcttatgaggtctagatttgaaaactcttgttgcc
tcaagtcaccatcttgtgccatcttgactctatcagctgtacatggtaca
agtgtgtatgtgccagcgcactttgagtggaagccagagagaggggggtg
ctctgtcactctaccttgaagcagggtccctcactgggcctggagcaagg
ctggcagccaggaagccccacgatctccccatctctgcttcccacagcac
tgggttctaggtgcccgtgtgactttatgctggttctgggagtcaaactc
agtcttcttgtttctgtaacaagtgtctcacctgtcgaacatctcccagc
ctgtctctttgacatctctggtttagggcttcgtctgtgagcaccagttc
ctcagcccttgttacacaggttgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_117349264_117350399
seq2: B6Ng01-110D08.b_45_1163 (reverse)

seq1  AATATGGACTGAAGATCAGCGACTCCCAGGACGCTTGCAGGCCTCTAGCA  50
      ||||| ||||||||||||| |||| ||||||||| |||||| ||||||||
seq2  AATAT-GACTGAAGATCAG-GACT-CCAGGACGC-TGCAGG-CTCTAGCA  45

seq1  CAGGATTGAGACTGTTGAAGTATTCAACCTCACTGAGCTTCTTCTGCACT  100
      ||||| ||||||||||| |||| |||| |||||||||||   ||||||||
seq2  CAGGA-TGAGACTGTTG-AGTA-TCAA-CTCACTGAGCT--CTCTGCACT  89

seq1  CAGATGAGCATTGTTGGTCTGCCCAGTCCTTGCTGGTTAATCTTACTAGT  150
      |||||||||||   |||||||||||||||||||||| ||||| |||||||
seq2  CAGATGAGCAT--GTGGTCTGCCCAGTCCTTGCTGG-TAATC-TACTAGT  135

seq1  AAATCCCCTTTTATAGATGGGTAGGAAAGTAGCTGGGTAGATGTGAATAT  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCC-TTTATAGATGGGTAGGAAAGTAGCTGGGTAGATGTGAATAT  184

seq1  GAATTCTATCAGCTCTGTTCCCTGGTACACATCGCTGCCCAGGAGCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAATTCTATCAGCTCTGTTCCCTGGTACACATCGCTGCCCAGGAGCCAAC  234

seq1  CACTCGACTCTAATCCCAAACCCACCCATTTTTTTAATCTGCTTACTCAG  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACTCGACTCTAATCCCAAACCCACCCA-TTTTTTAATCTGCTTACTCAG  283

seq1  TTTGAGCACAATGAGGCTCATTTGGTTTTATAGCCTATACTATTCATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCACAATGAGGCTCATTTGGTTTTATAGCCTATACTATTCATAGT  333

seq1  TGAAACTGAATGGGGTAGATCTTCACCCTGCAGCCACTATGGGCACAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGAATGGGGTAGATCTTCACCCTGCAGCCACTATGGGCACAACT  383

seq1  ATAACAGAATGCCGAGTGGGGACAGAGGGCCAGAAGAATAGCCTCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAATGCCGAGTGGGGACAGAGGGCCAGAAGAATAGCCTCTGGAA  433

seq1  CTTGGAGAAGGGGTAGGAATGATTTATGATCTCAGAATTCACCAAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAAGGGGTAGGAATGATTTATGATCTCAGAATTCACCAAAGTTG  483

seq1  AAACAGACATCAGCTTTCCATCAGTGGAAAATGCTCAGGCCTGGATTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACATCAGCTTTCCATCAGTGGAAAATGCTCAGGCCTGGATTAGC  533

seq1  ATCCTGAGCATGTATCTTCCTTAGAAACTTCTATTCCCTCCCTTTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGCATGTATCTTCCTTAGAAACTTCTATTCCCTCCCTTTTTCCT  583

seq1  GAATACTTTATAAGCCTGAGCATGTCTAAGAATGTGAGTTTCCTGTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTTATAAGCCTGAGCATGTCTAAGAATGTGAGTTTCCTGTGTTA  633

seq1  TGTCCCGCTCTGCCTAGACTGGCCCAACAGTGGCGCCAGTCTTTCACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCGCTCTGCCTAGACTGGCCCAACAGTGGCGCCAGTCTTTCACTAT  683

seq1  TCCCTCAGTGACTTTCTAGAGTCCAGGAAAGTTGATGGCGGTAGGAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGTGACTTTCTAGAGTCCAGGAAAGTTGATGGCGGTAGGAGTAG  733

seq1  GGGCAGGTGCAGTACAGCAATTTCTTCCCAGTTGTAACATTCCATCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTGCAGTACAGCAATTTCTTCCCAGTTGTAACATTCCATCCTGT  783

seq1  AGAGAAACTCCTTAAGATTCAGGAAATAAGCAACTCACAAGTCTCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTCCTTAAGATTCAGGAAATAAGCAACTCACAAGTCTCAGGAA  833

seq1  GTCCCTGAAACTTACAAGTTTCACAAAGCCCTTCCCTGCCCAAGGTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGAAACTTACAAGTTTCACAAAGCCCTTCCCTGCCCAAGGTTAAA  883

seq1  TAGGTGGTAAGAATTGCTAAGGAGAGGAGTTCTACATGTTGTGCAGAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGTAAGAATTGCTAAGGAGAGGAGTTCTACATGTTGTGCAGAGAA  933

seq1  ATTCAAGGTTCTACCTTTCATGAGTCTCACCCATGCTAGAATGGGCTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGTTCTACCTTTCATGAGTCTCACCCATGCTAGAATGGGCTTTG  983

seq1  GGTGATGCAGCTGATTTTGAGTCCTCCATGTTTCTATATGTAACCCAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGCAGCTGATTTTGAGTCCTCCATGTTTCTATATGTAACCCAAAT  1033

seq1  AAATTCATTGTCTCATCATAAGAGTCCTGTCTTGTTGGATCTCAGCTGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTGTCTCATCATAAGAGTCCTGTCTTGTTGGATCTCAGCTGCA  1083

seq1  GCAGTACAGCCTCTAGAAACCTGTTCTAAGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  GCAGTACAGCCTCTAGAAACCTGTTCTAAGGAATTC  1119

seq1: chr11_117184323_117185456
seq2: B6Ng01-110D08.g_69_1195

seq1  GAATTCTCTGGTGTGACTGCAGCTCTGGAACTTTCTAGATGCTTCTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTGTGACTGCAGCTCTGGAACTTTCTAGATGCTTCTAGAT  50

seq1  TACTACCAGCTCAGGCTGGAAGACAGTTTCCCTTCCCACCTCTGGTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCAGCTCAGGCTGGAAGACAGTTTCCCTTCCCACCTCTGGTGGGA  100

seq1  AAGAAACTGGGAACAAAACTTCTAGTTCCCCTTTTCACAGGTGGAGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGGGAACAAAACTTCTAGTTCCCCTTTTCACAGGTGGAGAGGC  150

seq1  CCACCTGTTTCCATTCTTGACTTGGGTGTTCTTCTCAGGCTTGCAGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTTTCCATTCTTGACTTGGGTGTTCTTCTCAGGCTTGCAGTTAT  200

seq1  ACAGATAGGGTCATGAAAAGGTCACAGGCCCGAGTTCTCACTCCTTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGGGTCATGAAAAGGTCACAGGCCCGAGTTCTCACTCCTTATCT  250

seq1  GAAATGCTCTTCTCCCTGGCAGCAAAAAGCCCTCAGGATGTCAGTCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTCTTCTCCCTGGCAGCAAAAAGCCCTCAGGATGTCAGTCAGTG  300

seq1  TGGACAGACCCGAGACCCGCTTGCTGCGTGTCATTGTCCACACCCCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGACCCGAGACCCGCTTGCTGCGTGTCATTGTCCACACCCCCCAT  350

seq1  CCTCACTCCACCCGACCCCCAGTCTCCCTCTCTGAGCCCCACCTGTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCCACCCGACCCCCAGTCTCCCTCTCTGAGCCCCACCTGTGGAA  400

seq1  TTCTGCTGGCTCCTGTGGCTGAAGATGCTGGGCCTGTGACAGGAGGTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGGCTCCTGTGGCTGAAGATGCTGGGCCTGTGACAGGAGGTGCC  450

seq1  CGTGGTCCATTCCTCCCTTCTCGGAGAGCTCGCTCTTGCAAAGCTGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTCCATTCCTCCCTTCTCGGAGAGCTCGCTCTTGCAAAGCTGGGAC  500

seq1  ACCAGTGGCCGTGAGATCGCGTCTCTCTGAGTTGAGCGGGGAGTGGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGCCGTGAGATCGCGTCTCTCTGAGTTGAGCGGGGAGTGGATGG  550

seq1  ACCAGCTCCATGCAGCCCAGCCACTGTGATCATCTTGTCCTGGACTGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCCATGCAGCCCAGCCACTGTGATCATCTTGTCCTGGACTGGAC  600

seq1  ATGCCAAGGGGCACTCTGACACTTGCCACCGCCATGTCTCTAGCCCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGGGGCACTCTGACACTTGCCACCGCCATGTCTCTAGCCCTTCC  650

seq1  TCCTCCCTGATACCCTGGAGGGACTTCCCCGGGACTTGCAAAGCCTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTGATACCCTGGAGGGACTTCCCCGGGACTTGCAAAGCCTTTGC  700

seq1  CCCTTCAAGTCCCTTGCTTATGAGGTCTAGATTTGAAAACTCTTGTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAGTCCCTTGCTTATGAGGTCTAGATTTGAAAACTCTTGTTGCC  750

seq1  TCAAGTCACCATCTTGTGCCATCTTGACTCTATCAGCTGTACATGGTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCACCATCTTGTGCCATCTTGACTCTATCAGCTGTACATGGTACA  800

seq1  AGTGTGTATGTGCCAGCGCAC-TTGAGTGGAAGCCAGAGAGAGGGGGGTG  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTGTGTATGTGCCAGCGCACTTTGAGTGGAAGCCAGAGAGAGGGGGGTG  850

seq1  CTCTGTCACTCTACCCTTGAGGCAGGGTCCCTCACTGGGCCTGGAGCAAG  899
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  CTCTGTCACTCTA-CCTTGAAGCAGGGTCCCTCACTGGGCCTGGAGCAAG  899

seq1  GCTGGCAGCCAGGGAGCCCCACGATCTCCCCATCTCTGCTTCCCACAGCA  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAGCCAGGAAGCCCCACGATCTCCCCATCTCTGCTTCCCACAGCA  949

seq1  CTGGGGTTCTAGGTGCCCGTGTGACTTTTATGCTGGTTCTGGGAGTCAAA  999
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CT-GGGTTCTAGGTGCCCGTGTGAC-TTTATGCTGGTTCTGGGAGTCAAA  997

seq1  CTCAGGTCCTCTTGTTTCTGTAACAAGTGTTCTCACCTGCCGAACCATCT  1049
      |||| ||| |||||||||||||||||||| ||||||||| |||| |||| 
seq2  CTCA-GTCTTCTTGTTTCTGTAACAAGTG-TCTCACCTGTCGAA-CATC-  1043

seq1  TCCCAGCCTGTCGTCTTGACTTCTGTG--TTAGGGCTTGCGTCTGTGAGG  1097
      ||||||||||||   ||||| ||| ||  ||||||||| ||||||||| |
seq2  TCCCAGCCTGTCTCTTTGACATCTCTGGTTTAGGGCTT-CGTCTGTGA-G  1091

seq1  CACCCAGGTCTCCAGCCTTTG-TACACAGGGTTGAAAT  1134
      || |||| ||  ||||| ||| |||||| |||||||||
seq2  CA-CCAGTTCCTCAGCCCTTGTTACACA-GGTTGAAAT  1127