BAC Information

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BAC

Clone NameB6Ng01-110F06
Chromosome11 (Build37)
Map Location 81,817,086 - 81,901,609
singlet/doubletdoublet
Overlap geneCcl2, Ccl7, Ccl11
Upstream geneAccn1, 1700071K01Rik, 5530401A14Rik
Downstream geneCcl12, Ccl8, Ccl1, Tmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110F06.bB6Ng01-110F06.g
ACCDH916979DH916980
length1,1191,129
definitionDH916979|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F06, 5' end.DH916980|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,817,086 - 81,818,028)(81,900,442 - 81,901,609)
sequence
gaattctttcattgtgtttcatgctgtatacaggctttagtttattgtgc
tttaaaatatatatatatcttaagtttagatggaaactggtgactttaaa
taagatagtaaagaactctgaaaatcacagtcttggggcaggagagatgt
ctcagcggtaatgaggactgactgctcttccagaggtcctgagtttggtt
cccaatacccatatgatggccagcaatcacctgtaacttagtggatcctg
agattcaggggctccaaccccctctcttctggtctccaggagccctgggg
atccaacccctggatcctctcttctggtctccatgggccctgcacacaca
tggtgcacagacatacatgcaggcaaaacaccgacatacaaattttttaa
aaaattggttcctccaggttttactgtttcttttttgtttgtttgtcttt
ttactccatggctttcagaggcaattctgtaatgactgcatttttttcct
aggggaggggctcaggtatggctggtcagtcttctctcagctctctggtc
gggtcatggctgcacagagataacggcagctctctgaaagcagtcagcct
cacaagttctgtgtgcatgttagggctcagcttcaccctcagttgcaagc
ctcagagctctgccacaaccttcactgcctgttgacaccaagcctgtgct
cgatcctgcatgcctgcacggttttctggattctgcctcctgcggactct
gaatcctcaacccgagactgactggtattaagcaacttactcagggggtc
tccttccctagatttgagtcagacgccatgccgtttttttctccaaaaaa
agcaaccagtgcaggcttctcacttctgctcacagtaatcctggattttt
cccagcatggaaattctccacagtgtaggtgaggtattctggatgggact
attggcatcagggttggcaattgcctagggcagaaacttcatcaaggttg
ggagagagtcaccccagcgtgggggagcgtgatatctcaggcctgagagt
tattcccagtatgccagctactttaaagctgtttagggtgagaattacag
cctagtggacttgtttcaa
gaattccagtacaagaagttgaaatgaaacttaaaccatgcaaattgagg
agctcttctgtccagggccctagattgttctccagtggctttccaatctt
gaattaagatccgcaacaattatctgggaaaagcaatgggcacgattagg
aactgactgggctctcctggaaatcaagctttctgctttgatgttcagct
ccttcgccattctccattctcattggtcacagtgttacaggatgagttga
atgaggcattggcccttattcaacccttcaccctttccaatgagagaaag
agttagacggatgaaatgacttgtgttaggctctatagatgcactatgac
aagtgtgtaaccacatcaaagcaaatgtcaccatgtaattaatatcaatt
agaaagaaagaaacggacagaaaatgatcatatggtttccaggaagccca
aagaccaaccattctgtgcactagttcccagacctgcctgtgaggatgcc
ctgggcaagtattgataacgtggtgggattggttagccatacagagagag
tttatagagattgtgtctggaattttctggttttgaagtgctctgtgttc
ctgggtaacttttaatcaagaccaattttggagtcactgagctagttcaa
agtttcatttaccaatagttggaagtcaaagataggaaacaatttcttca
aaatcactgtgacaattggacattgagcctcctaatttgttccctagttc
ctggcaaattctttgttcttgtggaataatttacagctatcagttcatgt
gacaaggacaagccatcctgggcctcaatggaagaaaaatgatttcaagg
aagcttgtttaacatgtcttaacaaaggacatgggaaacatccagtattt
catcccctcaatactgatctttcccagtagaaaaaatcctctgatgactg
acatgcttgcccagctgtacaagacatcaagtgagcatacagaaaaacag
ctgcatgtgatcattaagggcagatcagagaacactacagtggggttgcc
agagctctgagctatggttgtatgtatgaccatcatattctgtgatcgcg
gttaaccctgaagatttgagataggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_81817086_81818028
seq2: B6Ng01-110F06.b_228_1160

seq1  TCCTGAGTTTGGTTCCCAATACCCATATGATGGCCAGCAATCACCTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTTGGTTCCCAATACCCATATGATGGCCAGCAATCACCTGTAA  50

seq1  CTTAGTGGATCCTGAGATTCAGGGGCTCCAACCCCCTCTCTTCTGGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGGATCCTGAGATTCAGGGGCTCCAACCCCCTCTCTTCTGGTCTC  100

seq1  CAGGAGCCCTGGGGATCCAACCCCTGGATCCTCTCTTCTGGTCTCCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCCTGGGGATCCAACCCCTGGATCCTCTCTTCTGGTCTCCATGG  150

seq1  GCCCTGCACACACATGGTGCACAGACATACATGCAGGCAAAACACCGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCACACACATGGTGCACAGACATACATGCAGGCAAAACACCGACA  200

seq1  TACAAATTTTTTAAAAAATTGGTTCCTCCAGGTTTTACTGTTTCTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTTTTTAAAAAATTGGTTCCTCCAGGTTTTACTGTTTCTTTTTT  250

seq1  GTTTGTTTGTCTTTTTACTCCATGGCTTTCAGAGGCAATTCTGTAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTCTTTTTACTCCATGGCTTTCAGAGGCAATTCTGTAATGAC  300

seq1  TGCATTTTTTTCCTAGGGGAGGGGCTCAGGTATGGCTGGTCAGTCTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTTTTCCTAGGGGAGGGGCTCAGGTATGGCTGGTCAGTCTTCTC  350

seq1  TCAGCTCTCTGGTCGGGTCATGGCTGCACAGAGATAACGGCAGCTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTCTGGTCGGGTCATGGCTGCACAGAGATAACGGCAGCTCTCTG  400

seq1  AAAGCAGTCAGCCTCACAAGTTCTGTGTGCATGTTAGGGCTCAGCTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTCAGCCTCACAAGTTCTGTGTGCATGTTAGGGCTCAGCTTCAC  450

seq1  CCTCAGTTGCAAGCCTCAGAGCTCTGCCACAACCTTCACTGCCTGTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTGCAAGCCTCAGAGCTCTGCCACAACCTTCACTGCCTGTTGAC  500

seq1  ACCAAGCCTGTGCTCGATCCTGCATGCCTGCACGGTTTTCTGGATTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCTGTGCTCGATCCTGCATGCCTGCACGGTTTTCTGGATTCTGC  550

seq1  CTCCTGCGGACTCTGAATCCTCAACCCGAGACTGACTGGTATTAAGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCGGACTCTGAATCCTCAACCCGAGACTGACTGGTATTAAGCAAC  600

seq1  TTACTCAGGGGGTCTCCTTCCCTAGATTTGAGTCAGACGCCATGCCGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGGGGGTCTCCTTCCCTAGATTTGAGTCAGACGCCATGCCGTTT  650

seq1  TTTTACTCCAAAAAAAGCAACCAGTGCAGGCTTCTCACTTCTGCTCAACA  700
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTT-CTCCAAAAAAAGCAACCAGTGCAGGCTTCTCACTTCTGCTC-ACA  698

seq1  GTAATCCTGGATTTTTCCCAGCATGGAAATTCTCCACAGTGTAGGGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTAATCCTGGATTTTTCCCAGCATGGAAATTCTCCACAGTGTA-GGTGAG  747

seq1  GTATTCTGGATTGGACTATTGGCATCAGGGTTGGCAATTGCCTAGGGGCA  800
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  GTATTCTGGATGGGACTATTGGCATCAGGGTTGGCAATTGCCTA-GGGCA  796

seq1  GAAACTTCATCAAAGTTGGGAAGAGAGTCACCCCAGCGT-GGGGAGCGTG  849
      ||||||||||||| |||||| |||||||||||||||||| ||||||||||
seq2  GAAACTTCATCAAGGTTGGG-AGAGAGTCACCCCAGCGTGGGGGAGCGTG  845

seq1  TATATCTCAGGCCTGAGAGTATATCACAGGTAATGCCAGCTACTTTTAAA  899
       |||||||||||||||||||   || |||   ||||||||||||||  ||
seq2  -ATATCTCAGGCCTGAGAGTTATTCCCAG--TATGCCAGCTACTTT--AA  890

seq1  AGCTGTTTAGGGGTGAGATTTACAG-CTAGTTGGACTTGTTTCAA  943
      ||||||||| |||||||| |||||| |||| ||||||||||||||
seq2  AGCTGTTTA-GGGTGAGAATTACAGCCTAG-TGGACTTGTTTCAA  933

seq1: chr11_81900442_81901609
seq2: B6Ng01-110F06.g_65_1193 (reverse)

seq1  TCAGCCCTTATCTCAAACATCCTTCAGGGTTATAACCCGCTGATTCAACA  50
      ||||||  |||||||||    ||||||||||   | |||| |||   |||
seq2  TCAGCC--TATCTCAAA---TCTTCAGGGTT---AACCGC-GAT--CACA  39

seq1  GAATAATGAATGGGTCATTACCATAACACACAA-TATAGCTTCAGAGGCT  99
      |||| ||||   ||||||       ||| ||||  ||||| ||||||   
seq2  GAAT-ATGA--TGGTCAT-------ACATACAACCATAGC-TCAGAG--C  76

seq1  TCTGGGCACCCCCACTGTAGTGTTCTTCCTGATTCTTGCCCTTTAATTGG  149
      ||| |||| |||||||||||||||||  |||||   ||||| |||||   
seq2  TCT-GGCAACCCCACTGTAGTGTTCT--CTGAT--CTGCCC-TTAAT---  117

seq1  AATCACATGGCAGCTGTTTTTCCTGTATGCTCACTTGATTGTCTTGGTAC  199
       ||||||| |||||||||||| |||||||||||||||| |||||| ||||
seq2  GATCACAT-GCAGCTGTTTTT-CTGTATGCTCACTTGA-TGTCTT-GTAC  163

seq1  AGCTGGGCAAGCCATGTCAAGTCATCAGAGGATTTTTTTCTACTGGGAAA  249
      ||||||||||| |||||| ||||||||||||| |||||||||||||||||
seq2  AGCTGGGCAAG-CATGTC-AGTCATCAGAGGA-TTTTTTCTACTGGGAAA  210

seq1  GATCAGTATTGAGGGGATGAAATACTGGATGTTTCCCATGTCCTTTGTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTATTGAGGGGATGAAATACTGGATGTTTCCCATGTCCTTTGTTA  260

seq1  AGACATGTTAAACAAGCTTCCTTGAAATCATTTTTCTTCCATTGAGGCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGTTAAACAAGCTTCCTTGAAATCATTTTTCTTCCATTGAGGCCC  310

seq1  AGGATGGCTTGTCCTTGTCACATGAACTGATAGCTGTAAATTATTCCACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGCTTGTCCTTGTCACATGAACTGATAGCTGTAAATTATTCCACA  360

seq1  AGAACAAAGAATTTGCCAGGAACTAGGGAACAAATTAGGAGGCTCAATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAGAATTTGCCAGGAACTAGGGAACAAATTAGGAGGCTCAATGT  410

seq1  CCAATTGTCACAGTGATTTTGAAGAAATTGTTTCCTATCTTTGACTTCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGTCACAGTGATTTTGAAGAAATTGTTTCCTATCTTTGACTTCCA  460

seq1  ACTATTGGTAAATGAAACTTTGAACTAGCTCAGTGACTCCAAAATTGGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGTAAATGAAACTTTGAACTAGCTCAGTGACTCCAAAATTGGTC  510

seq1  TTGATTAAAAGTTACCCAGGAACACAGAGCACTTCAAAACCAGAAAATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAAAAGTTACCCAGGAACACAGAGCACTTCAAAACCAGAAAATTC  560

seq1  CAGACACAATCTCTATAAACTCTCTCTGTATGGCTAACCAATCCCACCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAATCTCTATAAACTCTCTCTGTATGGCTAACCAATCCCACCAC  610

seq1  GTTATCAATACTTGCCCAGGGCATCCTCACAGGCAGGTCTGGGAACTAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAATACTTGCCCAGGGCATCCTCACAGGCAGGTCTGGGAACTAGT  660

seq1  GCACAGAATGGTTGGTCTTTGGGCTTCCTGGAAACCATATGATCATTTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAATGGTTGGTCTTTGGGCTTCCTGGAAACCATATGATCATTTTC  710

seq1  TGTCCGTTTCTTTCTTTCTAATTGATATTAATTACATGGTGACATTTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGTTTCTTTCTTTCTAATTGATATTAATTACATGGTGACATTTGCT  760

seq1  TTGATGTGGTTACACACTTGTCATAGTGCATCTATAGAGCCTAACACAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGGTTACACACTTGTCATAGTGCATCTATAGAGCCTAACACAAG  810

seq1  TCATTTCATCCGTCTAACTCTTTCTCTCATTGGAAAGGGTGAAGGGTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATCCGTCTAACTCTTTCTCTCATTGGAAAGGGTGAAGGGTTGA  860

seq1  ATAAGGGCCAATGCCTCATTCAACTCATCCTGTAACACTGTGACCAATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGCCAATGCCTCATTCAACTCATCCTGTAACACTGTGACCAATGA  910

seq1  GAATGGAGAATGGCGAAGGAGCTGAACATCAAAGCAGAAAGCTTGATTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAGAATGGCGAAGGAGCTGAACATCAAAGCAGAAAGCTTGATTTC  960

seq1  CAGGAGAGCCCAGTCAGTTCCTAATCGTGCCCATTGCTTTTCCCAGATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGCCCAGTCAGTTCCTAATCGTGCCCATTGCTTTTCCCAGATAA  1010

seq1  TTGTTGCGGATCTTAATTCAAGATTGGAAAGCCACTGGAGAACAATCTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCGGATCTTAATTCAAGATTGGAAAGCCACTGGAGAACAATCTAG  1060

seq1  GGCCCTGGACAGAAGAGCTCCTCAATTTGCATGGTTTAAGTTTCATTTCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGACAGAAGAGCTCCTCAATTTGCATGGTTTAAGTTTCATTTCA  1110

seq1  ACTTCTTGTACTGGAATTC  1168
      |||||||||||||||||||
seq2  ACTTCTTGTACTGGAATTC  1129