BAC Information

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BAC

Clone NameB6Ng01-110H16
Chromosome11 (Build37)
Map Location 42,205,393 - 42,316,913
singlet/doubletdoublet
Overlap geneGabrb2
Upstream geneHspd1, LOC100039292, Gabrg2, Gabra1, Gabra6
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110H16.bB6Ng01-110H16.g
ACCDH917091DH917092
length1,110275
definitionDH917091|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H16, 5' end.DH917092|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,205,393 - 42,206,512)(42,316,639 - 42,316,913)
sequence
gaattctatatagcatactccatccatataaaatgtctgcaccaagaaaa
gctgaaataatctctcaggttggcaaatactaacttatcttatttttata
ttatctactaataatttattagattaacagtctaaaatttgatgctgcgt
atgttcactatacataaaacattctaatttccatggagaatcctctatgc
cataggtactatgttatttcatacactcagatgctttttctgtataatgt
tatatatgcatatatttgtcataatgttctccatgaatttcctctgaaaa
tgatcataaagtctaatgattatattttaatgatttgtaaggatctgatg
ttctgccagccagaaatatcttagagcatttcatttgacatcgttgttag
tatttttcacaaactgttcctgtgtaaaggcttcaaacatgggatccatg
caaatataaaagtatacaagaacttaaaatagtaagatttagtggtcttt
tttcacttctatcattttatgaatccattttgatcaactttggtacagta
tgaacatgagactaatttagaaaatctctcaactacacaaccttcaaata
gcagtgcctctttgtggaattcattattagaagcattcaatgatttagtt
acagtgaaggagtcctaactcttagcggctccacctcttccaaggagatc
agaaatcccccttaaatatgcacactgctctcgctattgtcatagagcaa
aataacatgcagtgggaatgcacaggaaacagcccactttccattcaaca
aacttaaacttaactatgacactcatgagtcaggcaacacctgtcatata
gtaaatgattaatgtatgcttaacaaatagctctgatttatctcctctca
aatgctaaatccccatcataagctctaaagaggagaggaggcagtatcct
gttattagtctaagatattggtactgattgatctcagatacagatctgca
acatcctcaggagtcagatagaaaagggaaaatagccagccatgtaattt
ctttacttcaaagctagtacctcactggagaaaaataacaagtatcgatg
cctttggtat
tgtcattactaatgtagtctcttattcagtagagacatgctcaacagtgt
aaacaggaaggacaataaaattatctctcacttcattgcagtatgataat
ctttgataattgggttataaatcatctcagcttaattttgtatttccttt
cctattccttttatttttttatgggtctagagctttattgtagaaaggca
gagaaaaaaagagaagatagaaggagagaggctggctatggttatgtgga
gagaaggaggaagggagggggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_42205393_42206512
seq2: B6Ng01-110H16.b_41_1150

seq1  GAATTCTATATAGCATACTCCATCCATATAAAATGTCTGCACCAAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATAGCATACTCCATCCATATAAAATGTCTGCACCAAGAAAA  50

seq1  GCTGAAATAATCTCTCAGGTTGGCAAATACTAACTTATCTTATTTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATAATCTCTCAGGTTGGCAAATACTAACTTATCTTATTTTTATA  100

seq1  TTATCTACTAATAATTTATTAGATTAACAGTCTAAAATTTGATGCTGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTACTAATAATTTATTAGATTAACAGTCTAAAATTTGATGCTGCGT  150

seq1  ATGTTCACTATACATAAAACATTCTAATTTCCATGGAGAATCCTCTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACTATACATAAAACATTCTAATTTCCATGGAGAATCCTCTATGC  200

seq1  CATAGGTACTATGTTATTTCATACACTCAGATGCTTTTTCTGTATAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTACTATGTTATTTCATACACTCAGATGCTTTTTCTGTATAATGT  250

seq1  TATATATGCATATATTTGTCATAATGTTCTCCATGAATTTCCTCTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGCATATATTTGTCATAATGTTCTCCATGAATTTCCTCTGAAAA  300

seq1  TGATCATAAAGTCTAATGATTATATTTTAATGATTTGTAAGGATCTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATAAAGTCTAATGATTATATTTTAATGATTTGTAAGGATCTGATG  350

seq1  TTCTGCCAGCCAGAAATATCTTAGAGCATTTCATTTGACATCGTTGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAGCCAGAAATATCTTAGAGCATTTCATTTGACATCGTTGTTAG  400

seq1  TATTTTTCACAAACTGTTCCTGTGTAAAGGCTTCAAACATGGGATCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCACAAACTGTTCCTGTGTAAAGGCTTCAAACATGGGATCCATG  450

seq1  CAAATATAAAAGTATACAAGAACTTAAAATAGTAAGATTTAGTGGTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATAAAAGTATACAAGAACTTAAAATAGTAAGATTTAGTGGTCTTT  500

seq1  TTTCACTTCTATCATTTTATGAATCCATTTTGATCAACTTTGGTACAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTCTATCATTTTATGAATCCATTTTGATCAACTTTGGTACAGTA  550

seq1  TGAACATGAGACTAATTTAGAAAATCTCTCAACTACACAACCTTCAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGAGACTAATTTAGAAAATCTCTCAACTACACAACCTTCAAATA  600

seq1  GCAGTGCCTCTTTGTGGAATTCATTATTAGAAGCATTCAATGATTTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCCTCTTTGTGGAATTCATTATTAGAAGCATTCAATGATTTAGTT  650

seq1  ACAGTGAAGGAGTCCTAACTCTTAGCGGCTCCACCTCTTCCAAGGAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAGGAGTCCTAACTCTTAGCGGCTCCACCTCTTCCAAGGAGATC  700

seq1  AGAAATCCCCCTTAAATATGCACACTGCTCTCGCTATTGTCATAGAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCCCCTTAAATATGCACACTGCTCTCGCTATTGTCATAGAGCAA  750

seq1  AATAACATGCAGTGGGAATGCACAGGAAACAGCCCACTTTCCATTCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATGCAGTGGGAATGCACAGGAAACAGCCCACTTTCCATTCAACA  800

seq1  AACTTAAACTTAACTATGACACTCATGAGTCAGGGCAACACCTGTCATAT  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACTTAAACTTAACTATGACACTCATGAGTCA-GGCAACACCTGTCATAT  849

seq1  AGTAAATGATTAATGTATGCTTAACAAATAGCTCTGATTTATCTCCTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGATTAATGTATGCTTAACAAATAGCTCTGATTTATCTCCTCTC  899

seq1  AAAATGCTAAATCCACATCATAGGCTCTAAAGAGAGAAGGAGGCAGTTAT  950
       ||||||||||||| ||||||| |||||||||||   ||||||||| |||
seq2  -AAATGCTAAATCCCCATCATAAGCTCTAAAGAGGAGAGGAGGCAG-TAT  947

seq1  CCTGTTTATTAGTCTTAGATAATTGGTACTGATTGAATCTCAGATACAGA  1000
      |||| |||||||||| |||| |||||||||||||| ||||||||||||||
seq2  CCTG-TTATTAGTCTAAGAT-ATTGGTACTGATTG-ATCTCAGATACAGA  994

seq1  TCTGCAACAT-CTCA-GAGTCAGATTAGAAAAGAGAAAATAGCCAAGGCA  1048
      |||||||||| |||| |||||||| |||||||| |||||||||| || ||
seq2  TCTGCAACATCCTCAGGAGTCAGA-TAGAAAAGGGAAAATAGCC-AGCCA  1042

seq1  TGTAATTTCTTTAACTTCAAAAGCTAGTAACTCACT-GAGAAAAATAACA  1097
      |||||||||||| ||||| |||||||||| |||||| |||||||||||||
seq2  TGTAATTTCTTT-ACTTC-AAAGCTAGTACCTCACTGGAGAAAAATAACA  1090

seq1  AGTTTATCGTATGCCTTTGGTAT  1120
      ||  ||||| |||||||||||||
seq2  AG--TATCG-ATGCCTTTGGTAT  1110

seq1: chr11_42316639_42316913
seq2: B6Ng01-110H16.g_75_349 (reverse)

seq1  TCCTCCCCCTCCCTTCCTCCTTCTCTCCACATAACCATAGCCAGCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCTCCCTTCCTCCTTCTCTCCACATAACCATAGCCAGCCTCTC  50

seq1  TCCTTCTATCTTCTCTTTTTTTCTCTGCCTTTCTACAATAAAGCTCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTATCTTCTCTTTTTTTCTCTGCCTTTCTACAATAAAGCTCTAGA  100

seq1  CCCATAAAAAAATAAAAGGAATAGGAAAGGAAATACAAAATTAAGCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAAAAAATAAAAGGAATAGGAAAGGAAATACAAAATTAAGCTGAG  150

seq1  ATGATTTATAACCCAATTATCAAAGATTATCATACTGCAATGAAGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTATAACCCAATTATCAAAGATTATCATACTGCAATGAAGTGAGA  200

seq1  GATAATTTTATTGTCCTTCCTGTTTACACTGTTGAGCATGTCTCTACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTTATTGTCCTTCCTGTTTACACTGTTGAGCATGTCTCTACTGA  250

seq1  ATAAGAGACTACATTAGTAATGACA  275
      |||||||||||||||||||||||||
seq2  ATAAGAGACTACATTAGTAATGACA  275