BAC Information

Click to search

BAC

Clone NameB6Ng01-110I23
Chromosome11 (Build37)
Map Location 65,408,981 - 65,554,461
singlet/doubletdoublet
Overlap geneMap2k4
Upstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
Downstream geneZkscan6, Dnahc9, Gm879, LOC668323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110I23.bB6Ng01-110I23.g
ACCDH917145DH917146
length546475
definitionDH917145|Mus musculus domesticus DNA, BAC clone: B6Ng01-110I23, 5' end.DH917146|Mus musculus domesticus DNA, BAC clone: B6Ng01-110I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,408,981 - 65,409,526)(65,553,981 - 65,554,461)
sequence
gaattccaaagtgctacctcacacttcagatgggtgatgaagtaggtaag
gagtatatcatccttagtgaggtaagcaatcgcaaaagaagtcatcagat
atgtactcactgataaatggatattagcccagaaacatagaacacccaag
atacaatttgcaaaacacaagaaaatcaagaagagggaagaccaatggga
ggatacttcattccaccttagaatagggaacaaaatacccacaaaaggag
ttacagagacaaaatttggagctaagatgaaaggatgaactatccagaga
ctactacccggggagccatcccataattagccaccaaacccagacactat
tgcacaatgccagaaagattttgctgaagggaccctgttatagctgtctc
ttgtgaggctatgccagtgcctggcaaagacagaagtggatgcacacagt
catctataagatggaacacagggcccccaatggagaagctagagaaagca
cccaaggagctgaaggggtctgcaaccctataggtggaacaacaat
ttttacattcttgaattcattgagaaggtaaacaagcctgtgaaacattt
ttggtgggtaagatttatggttctagagagtggttttcaagcttcctaat
gctgcaacactttaatatagttcctcatgtgaccctaaccatgaaattat
tatcattgttacttcataactgtaattttgctactgttatgaatcataat
gtaagtatatgatttccgatggttctaggccacccctgtgaaagagtcat
ttgaccccacaaaggaattgcaacccacaggttgagaaccactactctaa
agaacttattgggcaaaggagcaatgacaaagcagactgcttgaactagc
aggtctcagtggtgctgctctttcaggcaggagaacaggaaatgcttctt
attactcaacaggcacagtaaaatacaactagagagagtcgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_65408981_65409526
seq2: B6Ng01-110I23.b_51_596

seq1  GAATTCCAAAGTGCTACCTCACACTTCAGATGGGTGATGAAGTAGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGTGCTACCTCACACTTCAGATGGGTGATGAAGTAGGTAAG  50

seq1  GAGTATATCATCCTTAGTGAGGTAAGCAATCGCAAAAGAAGTCATCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATCATCCTTAGTGAGGTAAGCAATCGCAAAAGAAGTCATCAGAT  100

seq1  ATGTACTCACTGATAAATGGATATTAGCCCAGAAACATAGAACACCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTCACTGATAAATGGATATTAGCCCAGAAACATAGAACACCCAAG  150

seq1  ATACAATTTGCAAAACACAAGAAAATCAAGAAGAGGGAAGACCAATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTTGCAAAACACAAGAAAATCAAGAAGAGGGAAGACCAATGGGA  200

seq1  GGATACTTCATTCCACCTTAGAATAGGGAACAAAATACCCACAAAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTCATTCCACCTTAGAATAGGGAACAAAATACCCACAAAAGGAG  250

seq1  TTACAGAGACAAAATTTGGAGCTAAGATGAAAGGATGAACTATCCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGACAAAATTTGGAGCTAAGATGAAAGGATGAACTATCCAGAGA  300

seq1  CTACTACCCGGGGAGCCATCCCATAATTAGCCACCAAACCCAGACACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACCCGGGGAGCCATCCCATAATTAGCCACCAAACCCAGACACTAT  350

seq1  TGCACAATGCCAGAAAGATTTTGCTGAAGGGACCCTGTTATAGCTGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAATGCCAGAAAGATTTTGCTGAAGGGACCCTGTTATAGCTGTCTC  400

seq1  TTGTGAGGCTATGCCAGTGCCTGGCAAAGACAGAAGTGGATGCACACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGCTATGCCAGTGCCTGGCAAAGACAGAAGTGGATGCACACAGT  450

seq1  CATCTATAAGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATAAGATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGCA  500

seq1  CCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAAT  546

seq1: chr11_65553981_65554461
seq2: B6Ng01-110I23.g_68_548 (reverse)

seq1  CACACACACACACACACACACACACACACACACACGACTCTCTCTAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACGACTCTCTCTAGTTG  50

seq1  TATTTTACTGTGCCTGTTGAGTAATAAGAAGCATTTCCTGTTCTCCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACTGTGCCTGTTGAGTAATAAGAAGCATTTCCTGTTCTCCTGCC  100

seq1  TGAAAGAGCAGCACCACTGAGACCTGCTAGTTCAAGCAGTCTGCTTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGCAGCACCACTGAGACCTGCTAGTTCAAGCAGTCTGCTTTGTC  150

seq1  ATTGCTCCTTTGCCCAATAAGTTCTTTAGAGTAGTGGTTCTCAACCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCCTTTGCCCAATAAGTTCTTTAGAGTAGTGGTTCTCAACCTGTG  200

seq1  GGTTGCAATTCCTTTGTGGGGTCAAATGACTCTTTCACAGGGGTGGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAATTCCTTTGTGGGGTCAAATGACTCTTTCACAGGGGTGGCCTA  250

seq1  GAACCATCGGAAATCATATACTTACATTATGATTCATAACAGTAGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCGGAAATCATATACTTACATTATGATTCATAACAGTAGCAAAA  300

seq1  TTACAGTTATGAAGTAACAATGATAATAATTTCATGGTTAGGGTCACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTATGAAGTAACAATGATAATAATTTCATGGTTAGGGTCACATG  350

seq1  AGGAACTATATTAAAGTGTTGCAGCATTAGGAAGCTTGAAAACCACTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTATATTAAAGTGTTGCAGCATTAGGAAGCTTGAAAACCACTCTC  400

seq1  TAGAACCATAAATCTTACCCACCAAAAATGTTTCACAGGCTTGTTTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCATAAATCTTACCCACCAAAAATGTTTCACAGGCTTGTTTACCT  450

seq1  TCTCAATGAATTCAAGAATGTAAAAGAATTC  481
      |||||||||||||||||||||||||||||||
seq2  TCTCAATGAATTCAAGAATGTAAAAGAATTC  481