BAC Information

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BAC

Clone NameB6Ng01-111B13
ChromosomeX (Build37)11 (Build37)
Map Location 113,896,324 - 113,897,51940,425,771 - 40,426,228
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039277, Cpxcr1, EG624153
Downstream geneLOC100039300, EG665045, LOC100039319, LOC624284, LOC665066
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111B13.bB6Ng01-111B13.g
ACCDH917535DH917536
length1,190895
definitionDH917535|Mus musculus domesticus DNA, BAC clone: B6Ng01-111B13, 5' end.DH917536|Mus musculus domesticus DNA, BAC clone: B6Ng01-111B13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,896,324 - 113,897,519)(40,425,771 - 40,426,228)
sequence
gaattcaaatagggcaggatcctagaggtaggagctaatgtagacaccac
tgatggatgccctgtattggcttgttcctcatgactttcttagtctgctt
tctcatagaattgagaactaccagcctagtactgtcctcatccacaatga
gctagaccctcccacatcactaattaagaaaatgccctacagccagattt
catggaggcattttttttcaactgagatttcctccagtcagataactcta
acttgtgtcaagttgacataaaactagcctgcacactgtctttcatagat
ttctcctagaataattatattgaatccacacttaaatgtttacctactat
ttgtgctatgtgaataataccaaaattatcagcattttatcgttatttta
agtacaccttttccactcaaaatcaagctatacaagtaaactacatatac
cagatgaattgaaagcacaaaacaagcgatctgagaaatagaaacagaaa
aattgaaagcagaaatttctctagtgcagaacttcattatacaaattttg
tggtaactacagaaaaagatggtactgctcgtattagtcaggtttatgaa
aggaacagaacttaaaatgtgtgtgtatgtttgtatggctaataagccaa
catatgacatgtatttattagccaggcttacaggatgtatattcccggta
ttccaagaaagacactattacaacagaaagctgagaatctacaagttgtt
cagtctattacgctagatatttcagctatctcagtctagcttagagtcct
ggagaattcccggaaaactgatagatttcactgtgcactgtaatacttaa
gacattggatatagtagtagtggccatagcaacagccaaatgtaatcaag
ttgaaaaaaaaatataagtcacgacatccataggaattttagttgtggta
gtggctgggagtagcctcgatctaatcctgccacttggaatcctgagccc
tcctggcagccatgaccaggcaactcagtgatctgcctgactctttcaat
gcacttgaatggcagtggcctatgtgggcctcacactcatcagccaaggt
agtttcacacgaagaatcccagcaagcttggaggacatctcttggtttgc
ggtaggcatacatgtgtggtaagaatgatggccactgaag
gaattccataagaaaacaaaattggaagccaagaaactgtagagttaaag
aagagaataaaacaaaacataataaattattaaaaacaaaagaaagtaat
acaaaacaaggaaaagccctgacatgaaattatgaggaaaaaagaaagaa
agaaaaagaagagaagagaagagaagagaagagaagagaagagaagagaa
gagaagagaagagaagagaaaagaagagaaaagaaaagaaaagaaaagaa
gagaagagaagagaagagaaaagaaaagaaaagaaaagaaaagaaaagaa
aagaaaagaaaagaaaagaaaagaactgcccttgagtatttttttgttgt
tgatgcccttctaggactgcccatgcagcctatacttgaaagtgatttgt
ttctccactgaaacccccttgaaggaaattatattttcacttgtaggtgg
gtaccaataagaaataacttctggaagagggatacaggcatgtatccatt
tctcctttcatctctaggacccaatctgataaagacacatgtaagaggca
gtggctcttaccatagaaacaaggctttctaagcacaataggaccaattc
acaaatgaattcccagagactatggaataatatacagggactgcaggtat
cagtttgtgcctattctttcacagggtttcttgagacattaaaagaggaa
ttggatataaatatcttatagaggctgagtgttccaaggtctctcactct
ctggaaaatttctgtctgtagatatctatatttgttcccctgtgctacag
aaggaagcttctctgttgatgactgatcaaggcatggatctataaatata
gcaaaatgttattaagaataattttgttgctatattcttttagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_113896324_113897519
seq2: B6Ng01-111B13.b_48_1237 (reverse)

seq1  CTTCAGGTGGCCATCATTCTTTCCAC-CATGCTATGCCTACCGC-CACCC  48
      ||||| ||||||||||||||| |||| |||| ||||||||||||  ||| 
seq2  CTTCA-GTGGCCATCATTCTTACCACACATG-TATGCCTACCGCAAACCA  48

seq1  AGAGATGTCCTCCAGGGCCTGGCTGGGGATTCT--CTGTGAACACTACCC  96
      |||||||||||||| |  || ||| ||||||||   |||||| |||||| 
seq2  AGAGATGTCCTCCAAG--CTTGCT-GGGATTCTTCGTGTGAA-ACTACCT  94

seq1  TGGCTGATGGAGTTGTGGAGGCCCCACATAGGCCACTGCCATTCAAGTGC  146
      |||||||| ||| ||| |||| ||||||||||||||||||||||||||||
seq2  TGGCTGAT-GAG-TGT-GAGG-CCCACATAGGCCACTGCCATTCAAGTGC  140

seq1  ATGGAAAGAGTCCAGGCAGAATCACTGAGTGGCCTGGTCATGGCTGCCAG  196
      || |||||||| ||||||| |||||||||| |||||||||||||||||||
seq2  ATTGAAAGAGT-CAGGCAG-ATCACTGAGTTGCCTGGTCATGGCTGCCAG  188

seq1  GAGGGCTCAGGATTCCAAGTGGCAGGATTAGATCGAGGCTACTCCCAGCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTCAGGATTCCAAGTGGCAGGATTAGATCGAGGCTACTCCCAGCC  238

seq1  ACTACCACAACTAATATT-CTATGGATGTCGTGACTTATA-TTTTTTGTC  294
      |||||||||||||| ||| ||||||||||||||||||||| |||||| ||
seq2  ACTACCACAACTAAAATTCCTATGGATGTCGTGACTTATATTTTTTTTTC  288

seq1  AACTTGATTACATTTGGCTGTTGCTATGGCCACTACTACTATATCCAATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATTACATTTGGCTGTTGCTATGGCCACTACTACTATATCCAATG  338

seq1  TCTTAAGTATTACAGTGCACAGTGAAATCTATCAGTTTTCCGGGAATTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGTATTACAGTGCACAGTGAAATCTATCAGTTTTCCGGGAATTCT  388

seq1  CCAGGACTCTAAGCTAGACTGAGATAGCTGAAATATCTAGCGTAATAGAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTCTAAGCTAGACTGAGATAGCTGAAATATCTAGCGTAATAGAC  438

seq1  TGAACAACTTGTAGATTCTCAGCTTTCTGTTGTAATAGTGTCTTTCTTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACTTGTAGATTCTCAGCTTTCTGTTGTAATAGTGTCTTTCTTGG  488

seq1  AATACCGGGAATATACATCCTGTAAGCCTGGCTAATAAATACATGTCATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCGGGAATATACATCCTGTAAGCCTGGCTAATAAATACATGTCATA  538

seq1  TGTTGGCTTATTAGCCATACAAACATACACACACATTTTAAGTTCTGTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTTATTAGCCATACAAACATACACACACATTTTAAGTTCTGTTC  588

seq1  CTTTCATAAACCTGACTAATACGAGCAGTACCATCTTTTTCTGTAGTTAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAAACCTGACTAATACGAGCAGTACCATCTTTTTCTGTAGTTAC  638

seq1  CACAAAATTTGTATAATGAAGTTCTGCACTAGAGAAATTTCTGCTTTCAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATTTGTATAATGAAGTTCTGCACTAGAGAAATTTCTGCTTTCAA  688

seq1  TTTTTCTGTTTCTATTTCTCAGATCGCTTGTTTTGTGCTTTCAATTCATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTTTCTATTTCTCAGATCGCTTGTTTTGTGCTTTCAATTCATC  738

seq1  TGGTATATGTAGTTTACTTGTATAGCTTGATTTTGAGTGGAAAAGGTGTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATATGTAGTTTACTTGTATAGCTTGATTTTGAGTGGAAAAGGTGTA  788

seq1  CTTAAAATAACGATAAAATGCTGATAATTTTGGTATTATTCACATAGCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATAACGATAAAATGCTGATAATTTTGGTATTATTCACATAGCAC  838

seq1  AAATAGTAGGTAAACATTTAAGTGTGGATTCAATATAATTATTCTAGGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAGGTAAACATTTAAGTGTGGATTCAATATAATTATTCTAGGAG  888

seq1  AAATCTATGAAAGACAGTGTGCAGGCTAGTTTTATGTCAACTTGACACAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATGAAAGACAGTGTGCAGGCTAGTTTTATGTCAACTTGACACAA  938

seq1  GTTAGAGTTATCTGACTGGAGGAAATCTCAGTTGAAAAAAAATGCCTCCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGTTATCTGACTGGAGGAAATCTCAGTTGAAAAAAAATGCCTCCA  988

seq1  TGAAATCTGGCTGTAGGGCATTTTCTTAATTAGTGATGTGGGAGGGTCTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTGGCTGTAGGGCATTTTCTTAATTAGTGATGTGGGAGGGTCTA  1038

seq1  GCTCATTGTGGATGAGGACAGTACTAGGCTGGTAGTTCTCAATTCTATGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGTGGATGAGGACAGTACTAGGCTGGTAGTTCTCAATTCTATGA  1088

seq1  GAAAGCAGACTAAGAAAGTCATGAGGAACAAGCCAATACAGGGCATCCAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGACTAAGAAAGTCATGAGGAACAAGCCAATACAGGGCATCCAT  1138

seq1  CAGTGGTGTCTACATTAGCTCCTACCTCTAGGATCCTGCCCTATTTGAAT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGTCTACATTAGCTCCTACCTCTAGGATCCTGCCCTATTTGAAT  1188

seq1  TC  1196
      ||
seq2  TC  1190

seq1: chr11_40425771_40426228
seq2: B6Ng01-111B13.g_93_305

seq1  GGAAGCCAAGAAACTGGAAGTGGGCCACTAAGGCTGGGCACCTAAGGGAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGAATTAAAGCTCAGGTAAAATGAAAATGGAGAAAGGGCTTAGTAGATGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAGGCAGGGTTCAAATGTGGAAGAGGAGAGGAATGGGGAAGTCAGGCA  150
                                            ||||| || | |
seq2  --------------------------------------GGAAGCCAAGAA  12

seq1  TTGGTAGAAGGCTTAGCTG-CAATAAAGTTTGTTATGTATGACAATGC-T  198
         |||| ||    ||  |  ||||||              ||||  | |
seq2  ACTGTAG-AGTTAAAGAAGAGAATAAA--------------ACAAAACAT  47

seq1  ATTTGGAAACCTATTATCTTCCAACCCAAGAGAAAAAAAT-CAATCAGGT  247
      | |    ||  |||||      ||  ||| |||||  ||| |||      
seq2  AAT----AAATTATTA------AAAACAAAAGAAAGTAATACAA------  81

seq1  GGAACAAGAGAACACAGGTGAGTTCACGTTTGTTCTTGTGGTGGTTGTTG  297
        |||||| ||| |    |||                             
seq2  --AACAAG-GAAAAGCCCTGA-----------------------------  99

seq1  TGGTTGTTGTCGGTGGTGGTGGCCGCCATTTTGTTTTCTTGCCTCTGCAA  347
                                ||                 || ||
seq2  --------------------------CA-----------------TGAAA  106

seq1  TTGTATGGTGCTGGAAATAAAACTTGTCGTGAAAG-AGAGAAAAGAAAGG  396
      |  ||||     ||||| || |      |  |||| |||||| ||||   
seq2  T--TATG----AGGAAAAAAGAAAGAAAGAAAAAGAAGAGAAGAGAA---  147

seq1  GAGAA-AGAA-AGAA-AGAAAAAGAGAGAGGGGGAAGGGAAAAGA--ACA  441
      ||||| |||| |||| |||| |  |||||  | |||| ||| |||  | |
seq2  GAGAAGAGAAGAGAAGAGAAGAGAAGAGA-AGAGAAGAGAAGAGAAGAGA  196

seq1  AAAGAAGAGAAAAGAAA  458
      |||||||||||||||||
seq2  AAAGAAGAGAAAAGAAA  213