BAC Information

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BAC

Clone NameB6Ng01-111F21
Chromosome11 (Build37)
Map Location 53,057,151 - 53,207,868
singlet/doubletdoublet
Overlap geneHspa4, Zcchc10, Aff4, LOC100040576
Upstream geneSkp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205
Downstream geneLeap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111F21.bB6Ng01-111F21.g
ACCDH917730DH917731
length1,0851,076
definitionDH917730|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F21, 5' end.DH917731|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,206,795 - 53,207,868)(53,057,151 - 53,058,218)
sequence
gaattctctcagcccttatgatttaataatggcggctcaatgaacctgtt
tacatatgtgagtatgtcaaagcctttaccacactgttccaggtccagca
tatgttctagtttcctcagcaactgaagtggtatgtccatggtatacttg
gtatatacagaagacatgtattattagtttttgcacacagatatgataaa
aggaatatatgagtttctcagaagtagtgtatttctttctcagtcctcct
tttgttacatgaagaggctattagactggggttaactctgtggtctgtgg
ctatggcacaggaagccacacagtggctactcctttggcacttgctctaa
ccactgtgttaacctgtgatcttaggaggtcatgtgctcactctccagat
gtaatttattaacatctaacagcctaccccaactatgaaacgtttctgat
tctacctacaaaatataataaaaataggaaatcttaaagatagtataaac
aatgttgtttagtgtacagcactcagtaactaaatggaaggattactaag
aagaatactatgtttaacacggtttctttattaaatgtaaactgtgaact
caaaagggtgggtgaacctaggccactaatgttttttcttttccttttgt
tttttgagaggcttgttgttttggaaaaagagtattactatacatagccc
agattggtccaacttgctttgtatgtagctctggctggcttaaactaata
gtaatcctcctgactcagcccttctgagtgctagggattaaagacattta
tttccatagccagtattctactgctgttttgtaaaggaaaatattagcag
actggagatattgtttcagtagtatgatacttggcctaacatgtacaaga
tcctgtgttcaatcttctatcaccatcaaaaagggaagagaaaaactgag
ataacaacaggtgccctatatataaatctgaacactagaggcagagcaga
ggatcagcctcaacctcatctttgactaacaggtggtggagtttgaggac
agcccagacttacatgagacttcaggttcacagtt
gaattctgcctgtgaaacgctgagggtccctgccccctagctggttctga
ttggcaaataaagtcgctggcagccgatggctgggcagagagacacaagg
cagaactttaggattctcgggcaaggggactgaggaagaagcagaattac
catgccacaaaagggataacatccacttgagagtggcaggaagagaagca
tactaatcgtgtaagagtcagggaagagcggccccagggagcccccctaa
ttgggtctagggtagcaagaatgggatatagattttagtaaataataact
caggagtattgaaagagagatgttagcaacatggaagtttgggagcggcc
cagctattgagccgtttaaggcatactaaggctgagtatgcatgtctttc
atttgagagtccagaactttggagtgggtagcaaggaactcgaactgccg
ctgccaggtgagttgagcagattaaccaactacagctacagagttaccca
gagcctctcagacaactgggcttggaagtgcagtcttagaggggtcttcg
ctgagaacccagaaccatcccacactcccaagctagtaactgttcaagac
tcctgacaacctggtgccaacctccccagccatacctggacaatacaccc
tacagaccccagccttgtgctgccttaacaagctgcaggtttcctacctg
tcttagtcagggttctattgctgtgaaggggcaccattgccaagtcaact
cttataaaggtaaacatgttattggggcaggcttacagtttcagaggctt
agtccattatcattggtggtgggaagcatggcggcacacaggcagactgg
aggaggaagcttgaagagctgtgcatcttgaacctaaaggcaggcaggat
gagtctagatttttgataactgggtggagcttgagacataagagaacttt
aaaagtgacacacttcctccaataaagcaccacctcctcatagtgcctac
ccatattggcttagcattcaacacatgagttctgtggggccaaacgtatt
caaccacccacactccctctgcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53206795_53207868
seq2: B6Ng01-111F21.b_43_1127 (reverse)

seq1  AACTGTGA--CTG-AGTCTCATGT-AGTCTGGGCTGTCCTCAAACT-CAC  45
      ||||||||  ||| |||||||||| ||||||||||||||||||||| |||
seq2  AACTGTGAACCTGAAGTCTCATGTAAGTCTGGGCTGTCCTCAAACTCCAC  50

seq1  CACTTG-TAGTCAAAGATGA-GTTGAGCTTGATCCTCTTGCTTCTGCCTC  93
      ||| || ||||||||||||| ||||||  |||||||| ||| ||||||| 
seq2  CACCTGTTAGTCAAAGATGAGGTTGAGGCTGATCCTC-TGC-TCTGCCT-  97

seq1  CCAAGTGTTCAGA-TTATATATA-GGCACCTGTTGTTATTCCTCAG-TTT  140
       | |||||||||| ||||||||| |||||||||||||||  ||||| |||
seq2  -CTAGTGTTCAGATTTATATATAGGGCACCTGTTGTTAT--CTCAGTTTT  144

seq1  TCTCT--CCTTTTTGATGGTGATAG-AGATTGAACACAGGATCTTGTACA  187
      |||||  |||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTCTTCCCTTTTTGATGGTGATAGAAGATTGAACACAGGATCTTGTACA  194

seq1  TGTTAGG-CAAGTATCATACTACTG-AACAATATCTCCAGTCTGCTAATA  235
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTTAGGCCAAGTATCATACTACTGAAACAATATCTCCAGTCTGCTAATA  244

seq1  TTTT-CTTTACAAAACAGCAGTAGAATACTGGCTATGGAAATAAATGTCT  284
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTACAAAACAGCAGTAGAATACTGGCTATGGAAATAAATGTCT  294

seq1  TTAAT-CCTAGCACTCAGAA-GGCTGAGTCAGGAGGATTACTATTAGTTT  332
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAATCCCTAGCACTCAGAAGGGCTGAGTCAGGAGGATTACTATTAGTTT  344

seq1  AAAGCCAGCCAGAGCTACATACAAAGCAAGTTGGACCAATCTGGGCTATG  382
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAGCCAGCCAGAGCTACATACAAAGCAAGTTGGACCAATCTGGGCTATG  393

seq1  TATAGTAATACTCTTTTTCCAAAACAACAAGCCTCTCAAAAAACAAAAGG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAATACTCTTTTTCCAAAACAACAAGCCTCTCAAAAAACAAAAGG  443

seq1  AAAAGAAAAAACATTAGTGGCCTAGGTTCACCCACCCTTTTGAGTTCACA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAACATTAGTGGCCTAGGTTCACCCACCCTTTTGAGTTCACA  493

seq1  GTTTACATTTAATAAAGAAACCGTGTTAAACATAGTATTCTTCTTAGTAA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATTTAATAAAGAAACCGTGTTAAACATAGTATTCTTCTTAGTAA  543

seq1  TCCTTCCATTTAGTTACTGAGTGCTGTACACTAAACAACATTGTTTATAC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCATTTAGTTACTGAGTGCTGTACACTAAACAACATTGTTTATAC  593

seq1  TATCTTTAAGATTTCCTATTTTTATTATATTTTGTAGGTAGAATCAGAAA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTAAGATTTCCTATTTTTATTATATTTTGTAGGTAGAATCAGAAA  643

seq1  CGTTTCATAGTTGGGGTAGGCTGTTAGATGTTAATAAATTACATCTGGAG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCATAGTTGGGGTAGGCTGTTAGATGTTAATAAATTACATCTGGAG  693

seq1  AGTGAGCACATGACCTCCTAAGATCACAGGTTAACACAGTGGTTAGAGCA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCACATGACCTCCTAAGATCACAGGTTAACACAGTGGTTAGAGCA  743

seq1  AGTGCCAAAGGAGTAGCCACTGTGTGGCTTCCTGTGCCATAGCCACAGAC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAAAGGAGTAGCCACTGTGTGGCTTCCTGTGCCATAGCCACAGAC  793

seq1  CACAGAGTTAACCCCAGTCTAATAGCCTCTTCATGTAACAAAAGGAGGAC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTTAACCCCAGTCTAATAGCCTCTTCATGTAACAAAAGGAGGAC  843

seq1  TGAGAAAGAAATACACTACTTCTGAGAAACTCATATATTCCTTTTATCAT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGAAATACACTACTTCTGAGAAACTCATATATTCCTTTTATCAT  893

seq1  ATCTGTGTGCAAAAACTAATAATACATGTCTTCTGTATATACCAAGTATA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTGCAAAAACTAATAATACATGTCTTCTGTATATACCAAGTATA  943

seq1  CCATGGACATACCACTTCAGTTGCTGAGGAAACTAGAACATATGCTGGAC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGACATACCACTTCAGTTGCTGAGGAAACTAGAACATATGCTGGAC  993

seq1  CTGGAACAGTGTGGTAAAGGCTTTGACATACTCACATATGTAAACAGGTT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAGTGTGGTAAAGGCTTTGACATACTCACATATGTAAACAGGTT  1043

seq1  CATTGAGCCGCCATTATTAAATCATAAGGGCTGAGAGAATTC  1074
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCCGCCATTATTAAATCATAAGGGCTGAGAGAATTC  1085

seq1: chr11_53057151_53058218
seq2: B6Ng01-111F21.g_66_1141

seq1  GAATTCTGCCTGTGAAACGCTGAGGGTCCCTGCCCCCTAGCTGGTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGTGAAACGCTGAGGGTCCCTGCCCCCTAGCTGGTTCTGA  50

seq1  TTGGCAAATAAAGTCGCTGGCAGCCGATGGCTGGGCAGAGAGACACAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAATAAAGTCGCTGGCAGCCGATGGCTGGGCAGAGAGACACAAGG  100

seq1  CAGAACTTTAGGATTCTCGGGCAAGGGGACTGAGGAAGAAGCAGAATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTTAGGATTCTCGGGCAAGGGGACTGAGGAAGAAGCAGAATTAC  150

seq1  CATGCCACAAAAGGGATAACATCCACTTGAGAGTGGCAGGAAGAGAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACAAAAGGGATAACATCCACTTGAGAGTGGCAGGAAGAGAAGCA  200

seq1  TACTAATCGTGTAAGAGTCAGGGAAGAGCGGCCCCAGGGAGCCCCCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATCGTGTAAGAGTCAGGGAAGAGCGGCCCCAGGGAGCCCCCCTAA  250

seq1  TTGGGTCTAGGGTAGCAAGAATGGGATATAGATTTTAGTAAATAATAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTAGGGTAGCAAGAATGGGATATAGATTTTAGTAAATAATAACT  300

seq1  CAGGAGTATTGAAAGAGAGATGTTAGCAACATGGAAGTTTGGGAGCGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTATTGAAAGAGAGATGTTAGCAACATGGAAGTTTGGGAGCGGCC  350

seq1  CAGCTATTGAGCCGTTTAAGGCATACTAAGGCTGAGTATGCATGTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTGAGCCGTTTAAGGCATACTAAGGCTGAGTATGCATGTCTTTC  400

seq1  ATTTGAGAGTCCAGAACTTTGGAGTGGGTAGCAAGGAACTCGAACTGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGAGTCCAGAACTTTGGAGTGGGTAGCAAGGAACTCGAACTGCCG  450

seq1  CTGCCAGGTGAGTTGAGCAGATTAACCAACTACAGCTACAGAGTTACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGTGAGTTGAGCAGATTAACCAACTACAGCTACAGAGTTACCCA  500

seq1  GAGCCTCTCAGACAACTGGGCTTGGAAGTGCAGTCTTAGAGGGGTCTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTCAGACAACTGGGCTTGGAAGTGCAGTCTTAGAGGGGTCTTCG  550

seq1  CTGAGAACCCAGAACCATCCCACACTCCCAAGCTAGTAACTGTTCAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACCCAGAACCATCCCACACTCCCAAGCTAGTAACTGTTCAAGAC  600

seq1  TCCTGACAACCTGGTGCCAACCTCCCCAGCCATACCTGGACAATACACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACAACCTGGTGCCAACCTCCCCAGCCATACCTGGACAATACACCC  650

seq1  TACAGACCCCAGCCTTGTGCTGCCTTAACAAGCTGCAGGTTTCCTACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACCCCAGCCTTGTGCTGCCTTAACAAGCTGCAGGTTTCCTACCTG  700

seq1  TCTTAGTCAGGGTTCTATTGCTGTGAAGGGGCACCATTGCCAAGTCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCAGGGTTCTATTGCTGTGAAGGGGCACCATTGCCAAGTCAACT  750

seq1  CTTATAAAGGTAAACATGTAATTGGGGCAGGCTTACAGTTTCAGAGGCTT  800
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTATAAAGGTAAACATGTTATTGGGGCAGGCTTACAGTTTCAGAGGCTT  800

seq1  AGTCCATTATCATT-GTGGTGGGAAGCATGGCGGCACACAGGCAGACTGG  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTCCATTATCATTGGTGGTGGGAAGCATGGCGGCACACAGGCAGACTGG  850

seq1  AGGAGG-AGCT--GAGAGCTGTGCATCTTGAACCT-AAGGCAGGCAGGAT  895
      |||||| ||||   ||||||||||||||||||||| ||||||||||||||
seq2  AGGAGGAAGCTTGAAGAGCTGTGCATCTTGAACCTAAAGGCAGGCAGGAT  900

seq1  GAGTCTAGA-TTTTGAT-ACTGGGTGAAGCTTGAG-CATAGGAG-ACTTT  941
      ||||||||| ||||||| |||||||| |||||||| |||| ||| |||||
seq2  GAGTCTAGATTTTTGATAACTGGGTGGAGCTTGAGACATAAGAGAACTTT  950

seq1  -AAAGTGACACACTTCCTCCAATAAAGCCACACCTCCTCATAGTGCTACC  990
       |||||||||||||||||||||||||||  ||||||||||||||||   |
seq2  AAAAGTGACACACTTCCTCCAATAAAGCACCACCTCCTCATAGTGCCTAC  1000

seq1  CCATATGGGCTAAGCATTCAAACACATGAGTCTGTGGGGGGCCAAACGTA  1040
      |||||| |||| ||||||| ||||||||||| | || |||||||||||||
seq2  CCATATTGGCTTAGCATTC-AACACATGAGT-TCTGTGGGGCCAAACGTA  1048

seq1  TTCAAACCACCACACTCCCTCTGCATTT  1068
      ||||| |  |||||||||||||||||||
seq2  TTCAACCACCCACACTCCCTCTGCATTT  1076