BAC Information

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BAC

Clone NameB6Ng01-111L20
Chromosome11 (Build37)
Map Location 65,064,431 - 65,199,939
singlet/doubletdoublet
Overlap geneMyocd
Upstream geneEG544785, Hs3st3a1, LOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790
Downstream geneMap2k4, Zkscan6, Dnahc9, Gm879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111L20.bB6Ng01-111L20.g
ACCDH918004DH918005
length1,161794
definitionDH918004|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L20, 5' end.DH918005|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,198,786 - 65,199,939)(65,064,431 - 65,065,228)
sequence
gaattcttattttgggggtttagtttgttgctgttgtaaagctaggctgg
cctcagactcaaagagatctccctgcctctactaccaagtgctggagttt
taattatctgtgtgtttgcgccaagggctgcctggaacctgagatcagaa
gagggtgcttgcttccttggagtggaaattatgaaccattctgagctgtt
atagggtactgggaaccaaaattttgttctctccaagaccagtaagtgct
cttaactactgagccactagtccaaccacccaaacaatactttttaaaaa
tgtatttatgaaaaagaaacattatcaaggtattatatccataccaactt
atgtcttcaaaccattgaatattatttacaatgtaataatattcagtgta
attaataataaatcactgtatattattaatgttttgttcattattcatga
tgtaactatgtctctttaaggttttccttggctagctttctgtagtgtta
aaatgtttctttgttttctgaggctctccattaagcatagaggatgcagg
tgaattgaagcagagagaaaagaaaaggtttctttacttttacaaagaga
tttccttttccttttaactatgtgcatggcagtgtgtgtgtctgtttgca
tgtgagtgtgatttcatgaagataagaaaatgccattgggtcctatagag
ctggacctctggacagttgtgagctgcccactatgagtgctgggaacaaa
actctggttctctgcaaaagcagctactgctcttcattacttgcttagct
gtatctccagcccaaagcaaagtgtctcagtcatcccctttagtatttag
aaaatattgtagtcttataagaaaaaaaacatctgttcgttcatatttat
attaatattagtccatattatagaaccactgtgtgggatcaacacacaca
cacacacacacacacacacacacacacacacacactatggtggtgctgta
ccatgttactccaccagtgactgttattttatgcatgtgagtttttgact
gccattttatgtctgtgtgcctggttaagtgccaacgagccagaaaaggg
tgtgtgattcctctggacctggaccctacagcaaccatgtgggtgccttg
gaatcccactt
gaattccatacccaccattcacaaagccacttcccactcttactttccaa
tattccacaaataagcagtctgccttttccttgccaatatagaaagagca
aactagctttccaaatgttactaaataaacctaaacactccagtagccct
tcataatactaataaaagacataagcctctctggagtccagcctccttgc
ctatgagcttgtagtcccaggccttttgatttcttgtttcctctccattt
cagacatgatcttactatctgacccggtctggcccagagcctctaatgta
gtccagctgccttcaaacatgtcttcttccctcctcagtctgggattgta
taggtgtgtgttactgtatctaacggtaaatgtttgtgaattttactaaa
atcttacatgaataggaaagcagcaggttatggatggaaatgggagaacc
agggggttgcatgttttttaggctgtaggtttaaaaatgagttgcactgc
tttctttcattatgtgagccctcttataagttgactgcacaccagagcag
gcctcgctccccagactagcttgacaaatacacaaggaacttggtgagga
aagaaataataataaataatgcaaacaagaatacaaagagaagaggagga
ggagcagggggaaaggaagagggagaagaaacagaaggagcttggttgga
aaagaaatatataataacaataacataacacaataataataatctcaaaa
ttgcaagggacgtgagaataagtgggggtgggaggagtgggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_65198786_65199939
seq2: B6Ng01-111L20.b_51_1211 (reverse)

seq1  AAGTGGGATCCCAA-GCACCCACA-GGTTGCTGTA-GCTCCAGGTCCAGA  47
      ||||||||| |||| ||||||||| |||||||||| | ||||||||||||
seq2  AAGTGGGATTCCAAGGCACCCACATGGTTGCTGTAGGGTCCAGGTCCAGA  50

seq1  GG-ATCACACACCCTCTTCTGGCCTCTGTGGGCACTTACACA-GCACACA  95
      || |||||||||||| |||||| ||| || ||||||||  || |||||||
seq2  GGAATCACACACCCTTTTCTGG-CTC-GTTGGCACTTAACCAGGCACACA  98

seq1  GACATAAA--TGCAGTCAAAATACTCACATGCATAAAATAACAGTCACTG  143
      ||||||||   |||||||||| ||||||||||||||||||||||||||||
seq2  GACATAAAATGGCAGTCAAAA-ACTCACATGCATAAAATAACAGTCACTG  147

seq1  GT-GAGT-ACATGGTACAAGCACCACCATTGTGTGTGTGTGTGTGTGTGT  191
      || |||| ||||||||| ||||||||||| ||||||||||||||||||||
seq2  GTGGAGTAACATGGTAC-AGCACCACCATAGTGTGTGTGTGTGTGTGTGT  196

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGATCCCACACAGT-GTTCTATAAT  240
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGT-TGATCCCACACAGTGGTTCTATAAT  245

seq1  ATGGACTAATATTAATAT-AATATGAACGAACAGATGTTTTTCTTC-TAT  288
      |||||||||||||||||| ||||||||||||||||||||||| ||| |||
seq2  ATGGACTAATATTAATATAAATATGAACGAACAGATGTTTTTTTTCTTAT  295

seq1  AAGACTACAATATTTTCTAAATACTAAAGGGGATGACTGAGACACTTTGC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTACAATATTTTCTAAATACTAAAGGGGATGACTGAGACACTTTGC  345

seq1  TTTGGGCTGGAGATACAGCTAAGCAAGTAATGAAGAGCAGTAGCTGCTTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCTGGAGATACAGCTAAGCAAGTAATGAAGAGCAGTAGCTGCTTT  395

seq1  TGCAGAGAACCAGAGTTTTGTTCCCAGCACTCATAGTGGGCAGCTCACAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAACCAGAGTTTTGTTCCCAGCACTCATAGTGGGCAGCTCACAA  445

seq1  CTGTCCAGAGGTCCAGCTCTATAGGACCCAATGGCATTTTCTTATCTTCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGAGGTCCAGCTCTATAGGACCCAATGGCATTTTCTTATCTTCA  495

seq1  TGAAATCACACTCACATGCAAACAGACACACACACTGCCATGCACATAGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCACACTCACATGCAAACAGACACACACACTGCCATGCACATAGT  545

seq1  TAAAAGGAAAAGGAAATCTCTTTGTAAAAGTAAAGAAACCTTTTCTTTTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAAAAGGAAATCTCTTTGTAAAAGTAAAGAAACCTTTTCTTTTC  595

seq1  TCTCTGCTTCAATTCACCTGCATCCTCTATGCTTAATGGAGAGCCTCAGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTCAATTCACCTGCATCCTCTATGCTTAATGGAGAGCCTCAGA  645

seq1  AAACAAAGAAACATTTTAACACTACAGAAAGCTAGCCAAGGAAAACCTTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAAACATTTTAACACTACAGAAAGCTAGCCAAGGAAAACCTTA  695

seq1  AAGAGACATAGTTACATCATGAATAATGAACAAAACATTAATAATATACA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACATAGTTACATCATGAATAATGAACAAAACATTAATAATATACA  745

seq1  GTGATTTATTATTAATTACACTGAATATTATTACATTGTAAATAATATTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTATTATTAATTACACTGAATATTATTACATTGTAAATAATATTC  795

seq1  AATGGTTTGAAGACATAAGTTGGTATGGATATAATACCTTGATAATGTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTTGAAGACATAAGTTGGTATGGATATAATACCTTGATAATGTTT  845

seq1  CTTTTTCATAAATACATTTTTAAAAAGTATTGTTTGGGTGGTTGGACTAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCATAAATACATTTTTAAAAAGTATTGTTTGGGTGGTTGGACTAG  895

seq1  TGGCTCAGTAGTTAAGAGCACTTACTGGTCTTGGAGAGAACAAAATTTTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGTAGTTAAGAGCACTTACTGGTCTTGGAGAGAACAAAATTTTG  945

seq1  GTTCCCAGTACCCTATAACAGCTCAGAATGGTTCATAATTTCCACTCCAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGTACCCTATAACAGCTCAGAATGGTTCATAATTTCCACTCCAA  995

seq1  GGAAGCAAGCACCCTCTTCTGATCTCAGGTTCCAGGCAGCCCTTGGCGCA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAGCACCCTCTTCTGATCTCAGGTTCCAGGCAGCCCTTGGCGCA  1045

seq1  AACACACAGATAATTAAAACTCCAGCACTTGGTAGTAGAGGCAGGGAGAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAGATAATTAAAACTCCAGCACTTGGTAGTAGAGGCAGGGAGAT  1095

seq1  CTCTTTGAGTCTGAGGCCAGCCTAGCTTTACAACAGCAACAAACTAAACC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAGTCTGAGGCCAGCCTAGCTTTACAACAGCAACAAACTAAACC  1145

seq1  CCCAAAATAAGAATTC  1154
      ||||||||||||||||
seq2  CCCAAAATAAGAATTC  1161

seq1: chr11_65064431_65065228
seq2: B6Ng01-111L20.g_71_863

seq1  GAATTCCATACCCACCATTCACAAAGCCACTTCCCACTCTTACTTTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACCCACCATTCACAAAGCCACTTCCCACTCTTACTTTCCAA  50

seq1  TATTCCACAAATAAGCAGTCTGCCTTTTCCTTGCCAATATAGAAAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACAAATAAGCAGTCTGCCTTTTCCTTGCCAATATAGAAAGAGCA  100

seq1  AACTAGCTTTCCAAATGTTACTAAATAAACCTAAACACTCCAGTAGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCTTTCCAAATGTTACTAAATAAACCTAAACACTCCAGTAGCCCT  150

seq1  TCATAATACTAATAAAAGACATAAGCCTCTCTGGAGTCCAGCCTCCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATACTAATAAAAGACATAAGCCTCTCTGGAGTCCAGCCTCCTTGC  200

seq1  CTATGAGCTTGTAGTCCCAGGCCTTTTGATTTCTTGTTTCCTCTCCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGCTTGTAGTCCCAGGCCTTTTGATTTCTTGTTTCCTCTCCATTT  250

seq1  CAGACATGATCTTACTATCTGACCCGGTCTGGCCCAGAGCCTCTAATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGATCTTACTATCTGACCCGGTCTGGCCCAGAGCCTCTAATGTA  300

seq1  GTCCAGCTGCCTTCAAACATGTCTTCTTCCCTCCTCAGTCTGGGATTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCTGCCTTCAAACATGTCTTCTTCCCTCCTCAGTCTGGGATTGTA  350

seq1  TAGGTGTGTGTTACTGTATCTAACGGTAAATGTTTGTGAATTTTACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGTGTTACTGTATCTAACGGTAAATGTTTGTGAATTTTACTAAA  400

seq1  ATCTTACATGAATAGGAAAGCAGCAGGTTATGGATGGAAATGGGAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACATGAATAGGAAAGCAGCAGGTTATGGATGGAAATGGGAGAACC  450

seq1  AGGGGGTTGCATGTTTTTTAGGCTGTAGGTTTAAAAATGAGTTGCACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTTGCATGTTTTTTAGGCTGTAGGTTTAAAAATGAGTTGCACTGC  500

seq1  TTTCTTTCATTATGTGAGCCCTCTTATAAGTTGACTGCACACCAGAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCATTATGTGAGCCCTCTTATAAGTTGACTGCACACCAGAGCAG  550

seq1  GCCTCGCTCCCCAGACTAGCTTGACAAATACACAAGGAACTTGGTGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGCTCCCCAGACTAGCTTGACAAATACACAAGGAACTTGGTGAGGA  600

seq1  AAGAAATAATAATAAATAATGCAAACAAGAATACAAAGAGAAGAGGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAATAATAAATAATGCAAACAAGAATACAAAGAGAAGAGGAGGA  650

seq1  GGAGCAGGGGGAAAGGAAGAGGGAGAAGAAACAGAAGGAGCTTGGTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGGGAAAGGAAGAGGGAGAAGAAACAGAAGGAGCTTGGTTGGA  700

seq1  AAAGAAATAATAATAATAACAATAACAATAACAACAATAATAATAAATCT  750
      |||||||||   |||||||||||||| ||||| ||||||||||| |||||
seq2  AAAGAAATA--TATAATAACAATAAC-ATAAC-ACAATAATAAT-AATCT  745

seq1  CAAAATTGCAAGGGACGTGAGAATAAAGTGGGGTGGGAGGAGTGGGTG  798
      ||||||||||||||||||||||||||   |||||||||||||||||||
seq2  CAAAATTGCAAGGGACGTGAGAATAAGTGGGGGTGGGAGGAGTGGGTG  793